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Sequences
The following sequences are available for this feature:
mRNA from alignment at An01:3127912..3130471+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001057-T1 ID=CBS51388_001057-T1|Name=CBS51388_001057-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2560bp|location=Sequence derived from alignment at An01:3127912..3130471+ (Aspergillus niger CBS 513.88)
ATGGCCGGAACGAAAAAGCGCGCGAACGCCGACGACGACTTCGTGCTCAC
ATTGTCGGACGATGAGAATGACACGTTAAATCAGCTCGAAGAGGAGGGCG
AGGGCGACGATGGTGCGCTAGCCACGGGATCGAAAACGAAGAAGCGCAAG
AGAGATGATGCTGCGGCGGCGCAGCAGGAGAAGGGGAAGAACAAGAAGGT
GAAGAAGCAGGAACAACAGCAACAACAAGCACAACAGAAGAAAAAGAAGG
GAAAGAATGCCCCTGTTCAGGAGGAAGAGGATGAGGATGAAGAGGAGGAA
GAGGATCAGGGTGAAGATGATGGCGCGCTTAATTCGGATTTCGAGTTCGA
TGTCGGCGGTGCTGCGAATGAGGTTAGGGATTTCGATGGGTGGGAGGTTA
ATGGTAATGAGGAGGGTAAGGGTGGGGATAAGAAGGCTGTGGATATCGAT
GATATTATTTCGAGGAGGCAGGCGAAGAAGGAGGCTGAGTTGATTCGCAA
GCAGAAGAAGAAGAAGCAGAAGCAAGAGGAGGAGTTTAGTGAATTGGAGG
ATGATGATGAGGAGGATGGTGGTATGGAGGTCGACTTTGGGGATGATGAG
CTGCTTGCGGAGGATGGGTTCGGTATGGGTGTCGATGGGGAGGAGGAGAG
CGAGAAGTCCGATGCGGAGGATGAGGAGAAGGAAGAAGGGTCTGATGAGG
AGGCTGAGGGCAGTGATGAAGACGAGCAGATGGATGAGGATGATGACGAT
GCTGCTTCGGATGACGACTCGGTTGCTACTCCTGTCATGCACCCGGATGA
TATTGCCTCTGATCGGGACTCGGACGAGGAGAGTCAGGTCGACGCCGAGG
AAGAGGAGAAGCGCAAGGCTTTCTTCGCGCCCGAGGAGGAAAAGACTTCC
GAGTCTGCTATGGCAGATGCGAAGCGGTCGTTCCAGGAATTCAACCTCTC
TCGTCCCATCCTTCGTGGTCTCGCCGGAGTCAACTTCTCGAACCCTACAC
CCATTCAGCGCAAGACGATCCCCGTGGCTCTCCTGGGCAAGGATATTGTC
GGTAGTGCCGTTACTGGTTCCGGAAAGACTGCCGCCTTCGTTGTCCCGAT
TCTCGAACGTCTGCTGTTCCGGCCGCGCAAGGTCCCGACGAGTCGTGTTG
CCATTCTCATGCCCACCCGTGAATTGGCGGTGCAGTGCTACAATGTCGCT
ACAAAGCTGGCCACATACACGGACATCACCTTCTGTCAGCTGGTCGGTGG
TTTCAGTCTTCGCGAGCAGGAGAACATCTTGAAGAAGCGTCCCGATGTGA
TCATCGCCACCCCCGGTCGTTTCATTGATCACATGCGCAACTCGGCCAGC
TTCACCGTTGATACTCTGGAAATCCTGGTTCTGGATGAAGCCGACCGCAT
GCTCGAGGACGGTTTCGCCGACGAGTTGAACGAGATTCTCACTACGATCC
CCAAGTCGCGCCAGACTATGCTTTTCTCGGCTACGATGACGGACACTGTC
GACAAGCTCATTCGCGTCGGTCTCAACCGCCCCGTGCGCTTGATGGTCGA
CGCCAAGAAGAACACGGCCGTGACACTGGTGCAGGAATTCGTGCGTCTGC
GCCCCGGACGTGAGGACAAGCGACTAGGCTACCTTCTCTACCTCTGCAAA
GAGATCTACACCGGTCGGGTGATTGTCTTCTTCCGACAGAAGAAGGAGGC
GCACCGGGTGCGTATCATCTTCGGACTGCTGGGCTTGAAGGCTGCCGAGC
TCCACGGTAGCATGAGCCAAGAACAGGTATGTTATTTTACATCGACTTTC
ATTTTCTTCAATACGATCGATGATACTAATCGTGGGGTTTTCCAAACTAC
AGCGTATCAAGAGTGTCGAGAATTTCCGTGAGGGCAAGGCGGCGTTCCTG
CTGGCTACGGATCTGGCGTCGCGTGGTCTGGATATCAAGGGCGTTGAGAC
GGTCATCAACTACGAAGCGCCGCAGAGCCATGAGATCTACCTGCATCGTG
TTGGTCGTACTGCGCGTGCGGGCCGCTCCGGTCGGGCCTGCACCATTGCC
GCCGAGCCTGACCGCAAGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAGTC
GCAAGGAGCCAAGATTGCCAGCCGTGTGATTGAACCGGCGGTGGCGGATT
CCTGGGCGGCCAAGGCGGAGGAGTTGGCGGACGAGGTGGAAGAGGTGTTG
TCGGAGGAGAAGCTCGAGAAGCAGCTGGCACAGGCGGAGATGCAAGTGAC
CAAGGGAGAGAACCTGATCAAGCACGAGGCGGAGATCAAGTCGCGGCCGA
AGCGTACTTGGTTCGAGACGGAGCGCGACAAGAAGGCGGCGCGGAAGCTG
GGCGCGGCGGAGCTCAACGGGCCCGATGCCGGCATGTCCAAGAAGGAGAA
GCAGAAGCTCAGCAACAAGGACAAGAAGCGTCTGGATGATTCCCGTCAGC
GCCAGGAAGCGGGTGCTGGTTGGAAGAAGGGCCGGGCAACACGGGAGAGC
ATGAAGAATGGGCAATTGCCCAAAGCTAAGAAGGACAACAAGAAGAAGGG
CAAGAAATGA back to topCoding sequence (CDS) from alignment at An01:3127912..3130471+ >CBS51388_001057-T1 ID=CBS51388_001057-T1|Name=CBS51388_001057-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4968bp|location=Sequence derived from alignment at An01:3127912..3130471+ (Aspergillus niger CBS 513.88)
ATGGCCGGAACGAAAAAGCGCGCGAACGCCGACGACGACTTCGTGCTCAC
ATTGTCGGACGATGAGAATGACACGTTAAATCAGCTCGAAGAGGAGGGCG
AGGGCGACGATGGTGCGCTAGCCACGGGATCGAAAACGAAGAAGCGCAAG
AGAGATGATGCTGCGGCGGCGCAGCAGGAGAAGGGGAAGAACAAGAAGGT
GAAGAAGCAGGAACAACAGCAACAACAAGCACAACAGAAGAAAAAGAAGG
GAAAGAATGCCCCTGTTCAGGAGGAAGAGGATGAGGATGAAGAGGAGGAA
GAGGATCAGGGTGAAGATGATGGCGCGCTTAATTCGGATTTCGAGTTCGA
TGTCGGCGGTGCTGCGAATGAGGTTAGGGATTTCGATGGGTGGGAGGTTA
ATGGTAATGAGGAGGGTAAGGGTGGGGATAAGAAGGCTGTGGATATCGAT
GATATTATTTCGAGGAGGCAGGCGAAGAAGGAGGCTGAGTTGATTCGCAA
GCAGAAGAAGAAGAAGCAGAAGCAAGAGGAGGAGTTTAGTGAATTGGAGG
ATGATGATGAGGAGGATGGTGGTATGGAGGTCGACTTTGGGGATGATGAG
CTGCTTGCGGAGGATGGGTTCGGTATGGGTGTCGATGGGGAGGAGGAGAG
CGAGAAGTCCGATGCGGAGGATGAGGAGAAGGAAGAAGGGTCTGATGAGG
AGGCTGAGGGCAGTGATGAAGACGAGCAGATGGATGAGGATGATGACGAT
GCTGCTTCGGATGACGACTCGGTTGCTACTCCTGTCATGCACCCGGATGA
TATTGCCTCTGATCGGGACTCGGACGAGGAGAGTCAGGTCGACGCCGAGG
AAGAGGAGAAGCGCAAGGCTTTCTTCGCGCCCGAGGAGGAAAAGACTTCC
GAGTCTGCTATGGCAGATGCGAAGCGGTCGTTCCAGGAATTCAACCTCTC
TCGTCCCATCCTTCGTGGTCTCGCCGGAGTCAACTTCTCGAACCCTACAC
CCATTCAGCGCAAGACGATCCCCGTGGCTCTCCTGGGCAAGGATATTGTC
GGTAGTGCCGTTACTGGTTCCGGAAAGACTGCCGCCTTCGTTGTCCCGAT
TCTCGAACGTCTGCTGTTCCGGCCGCGCAAGGTCCCGACGAGTCGTGTTG
CCATTCTCATGCCCACCCGTGAATTGGCGGTGCAGTGCTACAATGTCGCT
ACAAAGCTGGCCACATACACGGACATCACCTTCTGTCAGCTGGTCGGTGG
TTTCAGTCTTCGCGAGCAGGAGAACATCTTGAAGAAGCGTCCCGATGTGA
TCATCGCCACCCCCGGTCGTTTCATTGATCACATGCGCAACTCGGCCAGC
TTCACCGTTGATACTCTGGAAATCCTGGTTCTGGATGAAGCCGACCGCAT
GCTCGAGGACGGTTTCGCCGACGAGTTGAACGAGATTCTCACTACGATCC
CCAAGTCGCGCCAGACTATGCTTTTCTCGGCTACGATGACGGACACTGTC
GACAAGCTCATTCGCGTCGGTCTCAACCGCCCCGTGCGCTTGATGGTCGA
CGCCAAGAAGAACACGGCCGTGACACTGGTGCAGGAATTCGTGCGTCTGC
GCCCCGGACGTGAGGACAAGCGACTAGGCTACCTTCTCTACCTCTGCAAA
GAGATCTACACCGGTCGGGTGATTGTCTTCTTCCGACAGAAGAAGGAGGC
GCACCGGGTGCGTATCATCTTCGGACTGCTGGGCTTGAAGGCTGCCGAGC
TCCACGGTAGCATGAGCCAAGAACAGCGTATCAAGAGTGTCGAGAATTTC
CGTGAGGGCAAGGCGGCGTTCCTGCTGGCTACGGATCTGGCGTCGCGTGG
TCTGGATATCAAGGGCGTTGAGACGGTCATCAACTACGAAGCGCCGCAGA
GCCATGAGATCTACCTGCATCGTGTTGGTCGTACTGCGCGTGCGGGCCGC
TCCGGTCGGGCCTGCACCATTGCCGCCGAGCCTGACCGCAAGGTGGTCAA
GGCGGCGGTGAAGGCGGGCAAGTCGCAAGGAGCCAAGATTGCCAGCCGTG
TGATTGAACCGGCGGTGGCGGATTCCTGGGCGGCCAAGGCGGAGGAGTTG
GCGGACGAGGTGGAAGAGGTGTTGTCGGAGGAGAAGCTCGAGAAGCAGCT
GGCACAGGCGGAGATGCAAGTGACCAAGGGAGAGAACCTGATCAAGCACG
AGGCGGAGATCAAGTCGCGGCCGAAGCGTACTTGGTTCGAGACGGAGCGC
GACAAGAAGGCGGCGCGGAAGCTGGGCGCGGCGGAGCTCAACGGGCCCGA
TGCCGGCATGTCCAAGAAGGAGAAGCAGAAGCTCAGCAACAAGGACAAGA
AGCGTCTGGATGATTCCCGTCAGCGCCAGGAAGCGGGTGCTGGTTGGAAG
AAGGGCCGGGCAACACGGGAGAGCATGAAGAATGGGCAATTGCCCAAAGC
TAAGAAGGACAACAAGAAGAAGGGCAAGAAATGAATGGCCGGAACGAAAA
AGCGCGCGAACGCCGACGACGACTTCGTGCTCACATTGTCGGACGATGAG
AATGACACGTTAAATCAGCTCGAAGAGGAGGGCGAGGGCGACGATGGTGC
GCTAGCCACGGGATCGAAAACGAAGAAGCGCAAGAGAGATGATGCTGCGG
CGGCGCAGCAGGAGAAGGGGAAGAACAAGAAGGTGAAGAAGCAGGAACAA
CAGCAACAACAAGCACAACAGAAGAAAAAGAAGGGAAAGAATGCCCCTGT
TCAGGAGGAAGAGGATGAGGATGAAGAGGAGGAAGAGGATCAGGGTGAAG
ATGATGGCGCGCTTAATTCGGATTTCGAGTTCGATGTCGGCGGTGCTGCG
AATGAGGTTAGGGATTTCGATGGGTGGGAGGTTAATGGTAATGAGGAGGG
TAAGGGTGGGGATAAGAAGGCTGTGGATATCGATGATATTATTTCGAGGA
GGCAGGCGAAGAAGGAGGCTGAGTTGATTCGCAAGCAGAAGAAGAAGAAG
CAGAAGCAAGAGGAGGAGTTTAGTGAATTGGAGGATGATGATGAGGAGGA
TGGTGGTATGGAGGTCGACTTTGGGGATGATGAGCTGCTTGCGGAGGATG
GGTTCGGTATGGGTGTCGATGGGGAGGAGGAGAGCGAGAAGTCCGATGCG
GAGGATGAGGAGAAGGAAGAAGGGTCTGATGAGGAGGCTGAGGGCAGTGA
TGAAGACGAGCAGATGGATGAGGATGATGACGATGCTGCTTCGGATGACG
ACTCGGTTGCTACTCCTGTCATGCACCCGGATGATATTGCCTCTGATCGG
GACTCGGACGAGGAGAGTCAGGTCGACGCCGAGGAAGAGGAGAAGCGCAA
GGCTTTCTTCGCGCCCGAGGAGGAAAAGACTTCCGAGTCTGCTATGGCAG
ATGCGAAGCGGTCGTTCCAGGAATTCAACCTCTCTCGTCCCATCCTTCGT
GGTCTCGCCGGAGTCAACTTCTCGAACCCTACACCCATTCAGCGCAAGAC
GATCCCCGTGGCTCTCCTGGGCAAGGATATTGTCGGTAGTGCCGTTACTG
GTTCCGGAAAGACTGCCGCCTTCGTTGTCCCGATTCTCGAACGTCTGCTG
TTCCGGCCGCGCAAGGTCCCGACGAGTCGTGTTGCCATTCTCATGCCCAC
CCGTGAATTGGCGGTGCAGTGCTACAATGTCGCTACAAAGCTGGCCACAT
ACACGGACATCACCTTCTGTCAGCTGGTCGGTGGTTTCAGTCTTCGCGAG
CAGGAGAACATCTTGAAGAAGCGTCCCGATGTGATCATCGCCACCCCCGG
TCGTTTCATTGATCACATGCGCAACTCGGCCAGCTTCACCGTTGATACTC
TGGAAATCCTGGTTCTGGATGAAGCCGACCGCATGCTCGAGGACGGTTTC
GCCGACGAGTTGAACGAGATTCTCACTACGATCCCCAAGTCGCGCCAGAC
TATGCTTTTCTCGGCTACGATGACGGACACTGTCGACAAGCTCATTCGCG
TCGGTCTCAACCGCCCCGTGCGCTTGATGGTCGACGCCAAGAAGAACACG
GCCGTGACACTGGTGCAGGAATTCGTGCGTCTGCGCCCCGGACGTGAGGA
CAAGCGACTAGGCTACCTTCTCTACCTCTGCAAAGAGATCTACACCGGTC
GGGTGATTGTCTTCTTCCGACAGAAGAAGGAGGCGCACCGGGTGCGTATC
ATCTTCGGACTGCTGGGCTTGAAGGCTGCCGAGCTCCACGGTAGCATGAG
CCAAGAACAGCGTATCAAGAGTGTCGAGAATTTCCGTGAGGGCAAGGCGG
CGTTCCTGCTGGCTACGGATCTGGCGTCGCGTGGTCTGGATATCAAGGGC
GTTGAGACGGTCATCAACTACGAAGCGCCGCAGAGCCATGAGATCTACCT
GCATCGTGTTGGTCGTACTGCGCGTGCGGGCCGCTCCGGTCGGGCCTGCA
CCATTGCCGCCGAGCCTGACCGCAAGGTGGTCAAGGCGGCGGTGAAGGCG
GGCAAGTCGCAAGGAGCCAAGATTGCCAGCCGTGTGATTGAACCGGCGGT
GGCGGATTCCTGGGCGGCCAAGGCGGAGGAGTTGGCGGACGAGGTGGAAG
AGGTGTTGTCGGAGGAGAAGCTCGAGAAGCAGCTGGCACAGGCGGAGATG
CAAGTGACCAAGGGAGAGAACCTGATCAAGCACGAGGCGGAGATCAAGTC
GCGGCCGAAGCGTACTTGGTTCGAGACGGAGCGCGACAAGAAGGCGGCGC
GGAAGCTGGGCGCGGCGGAGCTCAACGGGCCCGATGCCGGCATGTCCAAG
AAGGAGAAGCAGAAGCTCAGCAACAAGGACAAGAAGCGTCTGGATGATTC
CCGTCAGCGCCAGGAAGCGGGTGCTGGTTGGAAGAAGGGCCGGGCAACAC
GGGAGAGCATGAAGAATGGGCAATTGCCCAAAGCTAAGAAGGACAACAAG
AAGAAGGGCAAGAAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1.6 |
| Note | SMCOG1122:ATP-dependent RNA helicase |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An01 | supercontig | An01:3127912..3130471 + |
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