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CBS51388_001060-T1, CBS51388_001060-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_001060-T1
Unique NameCBS51388_001060-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:3143398..3144373+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_001060-T1 ID=CBS51388_001060-T1|Name=CBS51388_001060-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=976bp|location=Sequence derived from alignment at An01:3143398..3144373+ (Aspergillus niger CBS 513.88)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACGTAG
GTGCTTCCCAATCCATCGCGATTTTGATTGTTCTACGAGCATGGGTTTAT
GTCGACCGGTGGAAAAAACGCCATTATCTGTTGGAAGACAGTGGACTCGG
CATGCAGGGAGGAAAACGCACGACAATTCGGGATATCTGCGAAGGGAATC
ACGATGGAAAAATTTTTTGCGAAATGGCACAGAAACGAGATATGCTGACT
CGGCTTCACGTTCAATAGCGACTACGTCCAGATCCGCTCCCCTGTCTACC
TTCCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAG
TGCCCCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAA
CAACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGA
TCGTACGTCACCTATTTTCTGCCCCCATTGCCTTCCGCACGCAGAACGGC
TAGGGTCTGCAAAATCCCAGAACCAGACGCAGAAAGCTGACCGGGTAATC
TTTTCTAGATCCACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTT
GACGCCATTGTCAACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTC
CGCTGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTG
TCAACCAGGCTATTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTC
CGTAACATCAAGAGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGC
CGCCAAGGGTTCCTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCG
AGCGTGTTGCCAAGTCCAACCGGTAA
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Coding sequence (CDS) from alignment at An01:3143398..3144373+

>CBS51388_001060-T1 ID=CBS51388_001060-T1|Name=CBS51388_001060-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1944bp|location=Sequence derived from alignment at An01:3143398..3144373+ (Aspergillus niger CBS 513.88)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGAC
TACGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTA
TGCCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGA
CCAACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCT
GTCCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCA
GAACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCG
AAGACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTC
GATGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCAT
CGGTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCC
TGGCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCC
ATCAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAAT
GTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGG
TCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAAC
AAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTA
CGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATG
CCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACC
AACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGT
CCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGA
ACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAA
GACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGA
TGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCG
GTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTG
GCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCAT
CAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAATGT
CTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGGTC
CTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAACAA
GTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTACG
TCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCC
GCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAA
CTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCC
GCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGAAC
CCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGA
CAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATG
TGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCGGT
GCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGC
TGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCA
AGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS5CBS51388_001060Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001060-T1.exon1CBS51388_001060-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_001060-T1.exon2CBS51388_001060-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_001060-T1.exon3CBS51388_001060-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001060-T1.cdsCBS51388_001060-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001060-T1CBS51388_001060-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_1.6
DBxrefInterPro:IPR020606
DBxrefInterPro:IPR023798
DBxrefInterPro:IPR036823
DBxrefInterPro:IPR000235
DBxrefInterPro:IPR005716
DBxrefPFAM:PF00177
Productribosomal protein S5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:3143398..3144373 +
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