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CBS51388_001624-T1, CBS51388_001624-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_001624-T1
Unique NameCBS51388_001624-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:1164656..1165889+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_001624-T1 ID=CBS51388_001624-T1|Name=CBS51388_001624-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1234bp|location=Sequence derived from alignment at An02:1164656..1165889+ (Aspergillus niger CBS 513.88)
ATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCT
GGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCT
CTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAAC
ATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGG
TACCACCGTACGTCTTCTCTAGCTCCCATAGTACTCTTCCTACTCCGATT
GGACCAACTAACTCTCTTCCCTCACAGGTCATCTTCGAGGGTGAGACCAC
CTTCGGCTACAAGGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCG
ACATCACCGTCAAGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCT
CGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTT
CTTCCAGGCCCACAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCT
ACAACACCCCTGTCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATC
ACCGATGTGACCATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACAC
CGATGCCTTTGACATTGGCCAGAGTACCTACATCACCATTGACGGTGCCA
CCGTCTACAACCAGGATGACTGCCTGGCCATCAACTCGGGTGAGGTATGT
ATATGTCTTGCCCCATCGCGCTGCCACTGTCCCGTAGCCACACGTGATTA
GAGACTGACTAGAACACAGCACATCACCTTCACCAACGGCTACTGTGATG
GTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACC
GTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGG
TGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCA
AGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTT
GAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGT
CAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCT
CTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGG
ACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAA
GAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAA
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Coding sequence (CDS) from alignment at An02:1164656..1165889+

>CBS51388_001624-T1 ID=CBS51388_001624-T1|Name=CBS51388_001624-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3267bp|location=Sequence derived from alignment at An02:1164656..1165889+ (Aspergillus niger CBS 513.88)
ATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCT
GGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCT
CTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAAC
ATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGG
TACCACCGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGA
AGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCC
TCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGG
TAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCG
ACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGT
TTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACCATCGACAA
CTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCC
AGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACCAGGATGAC
TGCCTGGCCATCAACTCGGGTGAGCACATCACCTTCACCAACGGCTACTG
TGATGGTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACA
ACACCGTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAG
AACGGTGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAA
CGTCAAGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTG
TCGTTGAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAAC
GGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAA
GAGCTCTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGA
ACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAG
TGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAAATGCATTTCCT
CCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTG
CTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAG
TCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCC
CGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCGTCA
TCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTG
ATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAA
GATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTG
GCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGC
ATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCT
GGCCGACCACCTGACCATCACCGATGTGACCATCGACAACTCCGCCGGTA
CCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGAGTACCTAC
ATCACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCAT
CAACTCGGGTGAGCACATCACCTTCACCAACGGCTACTGTGATGGTGGCC
ACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAAC
GACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCG
CATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTG
AGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAG
GACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGT
TGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTA
CTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGG
AGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGT
CCCCTCGGGCGCTTCCTGCAGCGATTAAATGCATTTCCTCCAGAACGCCG
TTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAG
AAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTC
CTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGTGAGA
CTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCGTCATCTTCGAGGGT
GAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTGATCTCCATGTC
CGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAAGATCAACTGCG
ACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCAAGACCAAG
CCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGCATCACCGGCCT
GAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCTGGCCGACCACC
TGACCATCACCGATGTGACCATCGACAACTCCGCCGGTACCAGCAAGGGT
CACAACACCGATGCCTTTGACATTGGCCAGAGTACCTACATCACCATTGA
CGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCATCAACTCGGGTG
AGCACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCC
ATCGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTGACCAT
CTCCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCA
TCTACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACC
CTGTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAA
CGGCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCA
CTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTAC
ATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGA
TGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCG
CTTCCTGCAGCGATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_001624CBS51388_001624Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001624-T1.exon1CBS51388_001624-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_001624-T1.exon2CBS51388_001624-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_001624-T1.exon3CBS51388_001624-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001624-T1.cdsCBS51388_001624-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001624-T1CBS51388_001624-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:1164656..1165889 +
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