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Sequences
The following sequences are available for this feature:
mRNA from alignment at An02:1469944..1471546+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001717-T1 ID=CBS51388_001717-T1|Name=CBS51388_001717-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1603bp|location=Sequence derived from alignment at An02:1469944..1471546+ (Aspergillus niger CBS 513.88)
ATGGCTGCCCGTCCTCAGAACATTGGTATCAAGGCCATTGAGGTCTACTT
CCCTCGTCAGGTTCGTGCCTCTTGCCACCCCATGACTATCTGCTGCTTCC
TATTTTGAGCTGTGTTCTAATATGTCCCCGTGCTTTCTAGTGTGTCGACC
AGAGCGAGCTTGAGAAATTCGATGGCGTGAGCGAAGGCAAATACACCATT
GGTCTTGGTCAGACCAAGATGAGCTTCTGTGATGACCGTGAAGGTATGCT
TTTGAGGAAATGACAGACATCGTCCGCATGTCATGATTGCGTGGCAATGC
TAACATGCACTTACCGGCAGACATCTACTCCATTGCTTTGACCACCTTCT
CCTCCCTTCTCCGCAAGTACAACATCGACCCCAACTCCATTGGCCGCCTG
GAGGTCGGTACCGAGACCTTGCTGGACAAGTCCAAGTCCGTCAAGTCCGT
CCTGATGCAGCTTCTGGCTCCCCACGGAAACACCAACGTTGAGGGTGTTG
ACAACGTCAATGCTTGCTACGGTGGCACCAACGCTGTTTTCAACAGCATC
AACTGGCTCGAGTCCTCTGCCTGGGATGGCAGAGATGCCGTTGTTGTCTG
CGGTGACATTGCCCTGTACGCCGAGGGTGCTGCTCGCCCTACCGGTGGTG
CTGGCTGTGTCGCCATGCTGATCGGTCCTGACGCCCCTATTGTGTTCGAG
CCCGGTCTTCGTGCCTCCTACGTCACCCACGCCTACGACTTCTTCAAGCC
CGACCTGACCAGCGAGTACCCTGTCGTGGATGGTCACTTCTCCCTCAGAT
GCTACACTGAGGCTGTCGACGCTTGCTACAAGGCCTACAATGCTCGTGAG
AAGACCTTGAAGGAGAAGGTTCAGAACGGTACCAACGGCACCGCCCAGGA
CGACTCCAAGACTGCCTTGGACCGCTTCGACTACCTCTGCTACCATGCTC
CTACCTGCAAGCTGGTGCAGAAATCCTTCGCTCGTATGCTGTACAACGAC
TACCTCACAAACCCCACTCACCCTGCTTTCGCCGAAGTGGCTCCTGAGCT
CCGTGATTTGGACTACGCCACCTCTCTCACTGACAAGAACGTGGAGAAGA
CCTTCATGGGCCTGACCAAGAAGCGCTTCGCTGAGCGTGTTAAGCCCGCT
CTCGAGGTTGCCACTCTTTGCGGTAACATGTACACTGCCACCGTTTGGGC
TGGTCTGGCTAGCTTGATCTCTCACGTCCCCTTCGATGCTAGCGAGTCCA
AGCGCATCGGTCTCTTCTCCTACGGCAGTGGTCTTGCCAGCTCCCTGCTT
AGCGTAAAGATTGTCGGAGACGTGTCCAACCTGGTGGAGAAGCTCGATCT
CAAGAACCGTCTTAGCAACCGCAACGTTCTCCCTCCTCAGTCCTACGTTG
ACGTAAGTACTTCAACGACTATCTTTGACCCACACCTTGAACTCTAGTTG
CTAACGTCCACTTAGATGTGTGCCCTCCGTGAGCATGCTCACCTCAAGAA
GAACTTCAAGCCTTCCGGCAACACCGAGACTCTCTACCCTGGTACTTACT
ACTTGACTGAGGTGGACGATATGTTCCGCCGCAAGTACGACGTCAAGGCA
TGA back to topCoding sequence (CDS) from alignment at An02:1469944..1471546+ >CBS51388_001717-T1 ID=CBS51388_001717-T1|Name=CBS51388_001717-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5532bp|location=Sequence derived from alignment at An02:1469944..1471546+ (Aspergillus niger CBS 513.88)
ATGGCTGCCCGTCCTCAGAACATTGGTATCAAGGCCATTGAGGTCTACTT
CCCTCGTCAGTGTGTCGACCAGAGCGAGCTTGAGAAATTCGATGGCGTGA
GCGAAGGCAAATACACCATTGGTCTTGGTCAGACCAAGATGAGCTTCTGT
GATGACCGTGAAGACATCTACTCCATTGCTTTGACCACCTTCTCCTCCCT
TCTCCGCAAGTACAACATCGACCCCAACTCCATTGGCCGCCTGGAGGTCG
GTACCGAGACCTTGCTGGACAAGTCCAAGTCCGTCAAGTCCGTCCTGATG
CAGCTTCTGGCTCCCCACGGAAACACCAACGTTGAGGGTGTTGACAACGT
CAATGCTTGCTACGGTGGCACCAACGCTGTTTTCAACAGCATCAACTGGC
TCGAGTCCTCTGCCTGGGATGGCAGAGATGCCGTTGTTGTCTGCGGTGAC
ATTGCCCTGTACGCCGAGGGTGCTGCTCGCCCTACCGGTGGTGCTGGCTG
TGTCGCCATGCTGATCGGTCCTGACGCCCCTATTGTGTTCGAGCCCGGTC
TTCGTGCCTCCTACGTCACCCACGCCTACGACTTCTTCAAGCCCGACCTG
ACCAGCGAGTACCCTGTCGTGGATGGTCACTTCTCCCTCAGATGCTACAC
TGAGGCTGTCGACGCTTGCTACAAGGCCTACAATGCTCGTGAGAAGACCT
TGAAGGAGAAGGTTCAGAACGGTACCAACGGCACCGCCCAGGACGACTCC
AAGACTGCCTTGGACCGCTTCGACTACCTCTGCTACCATGCTCCTACCTG
CAAGCTGGTGCAGAAATCCTTCGCTCGTATGCTGTACAACGACTACCTCA
CAAACCCCACTCACCCTGCTTTCGCCGAAGTGGCTCCTGAGCTCCGTGAT
TTGGACTACGCCACCTCTCTCACTGACAAGAACGTGGAGAAGACCTTCAT
GGGCCTGACCAAGAAGCGCTTCGCTGAGCGTGTTAAGCCCGCTCTCGAGG
TTGCCACTCTTTGCGGTAACATGTACACTGCCACCGTTTGGGCTGGTCTG
GCTAGCTTGATCTCTCACGTCCCCTTCGATGCTAGCGAGTCCAAGCGCAT
CGGTCTCTTCTCCTACGGCAGTGGTCTTGCCAGCTCCCTGCTTAGCGTAA
AGATTGTCGGAGACGTGTCCAACCTGGTGGAGAAGCTCGATCTCAAGAAC
CGTCTTAGCAACCGCAACGTTCTCCCTCCTCAGTCCTACGTTGACATGTG
TGCCCTCCGTGAGCATGCTCACCTCAAGAAGAACTTCAAGCCTTCCGGCA
ACACCGAGACTCTCTACCCTGGTACTTACTACTTGACTGAGGTGGACGAT
ATGTTCCGCCGCAAGTACGACGTCAAGGCATGAATGGCTGCCCGTCCTCA
GAACATTGGTATCAAGGCCATTGAGGTCTACTTCCCTCGTCAGTGTGTCG
ACCAGAGCGAGCTTGAGAAATTCGATGGCGTGAGCGAAGGCAAATACACC
ATTGGTCTTGGTCAGACCAAGATGAGCTTCTGTGATGACCGTGAAGACAT
CTACTCCATTGCTTTGACCACCTTCTCCTCCCTTCTCCGCAAGTACAACA
TCGACCCCAACTCCATTGGCCGCCTGGAGGTCGGTACCGAGACCTTGCTG
GACAAGTCCAAGTCCGTCAAGTCCGTCCTGATGCAGCTTCTGGCTCCCCA
CGGAAACACCAACGTTGAGGGTGTTGACAACGTCAATGCTTGCTACGGTG
GCACCAACGCTGTTTTCAACAGCATCAACTGGCTCGAGTCCTCTGCCTGG
GATGGCAGAGATGCCGTTGTTGTCTGCGGTGACATTGCCCTGTACGCCGA
GGGTGCTGCTCGCCCTACCGGTGGTGCTGGCTGTGTCGCCATGCTGATCG
GTCCTGACGCCCCTATTGTGTTCGAGCCCGGTCTTCGTGCCTCCTACGTC
ACCCACGCCTACGACTTCTTCAAGCCCGACCTGACCAGCGAGTACCCTGT
CGTGGATGGTCACTTCTCCCTCAGATGCTACACTGAGGCTGTCGACGCTT
GCTACAAGGCCTACAATGCTCGTGAGAAGACCTTGAAGGAGAAGGTTCAG
AACGGTACCAACGGCACCGCCCAGGACGACTCCAAGACTGCCTTGGACCG
CTTCGACTACCTCTGCTACCATGCTCCTACCTGCAAGCTGGTGCAGAAAT
CCTTCGCTCGTATGCTGTACAACGACTACCTCACAAACCCCACTCACCCT
GCTTTCGCCGAAGTGGCTCCTGAGCTCCGTGATTTGGACTACGCCACCTC
TCTCACTGACAAGAACGTGGAGAAGACCTTCATGGGCCTGACCAAGAAGC
GCTTCGCTGAGCGTGTTAAGCCCGCTCTCGAGGTTGCCACTCTTTGCGGT
AACATGTACACTGCCACCGTTTGGGCTGGTCTGGCTAGCTTGATCTCTCA
CGTCCCCTTCGATGCTAGCGAGTCCAAGCGCATCGGTCTCTTCTCCTACG
GCAGTGGTCTTGCCAGCTCCCTGCTTAGCGTAAAGATTGTCGGAGACGTG
TCCAACCTGGTGGAGAAGCTCGATCTCAAGAACCGTCTTAGCAACCGCAA
CGTTCTCCCTCCTCAGTCCTACGTTGACATGTGTGCCCTCCGTGAGCATG
CTCACCTCAAGAAGAACTTCAAGCCTTCCGGCAACACCGAGACTCTCTAC
CCTGGTACTTACTACTTGACTGAGGTGGACGATATGTTCCGCCGCAAGTA
CGACGTCAAGGCATGAATGGCTGCCCGTCCTCAGAACATTGGTATCAAGG
CCATTGAGGTCTACTTCCCTCGTCAGTGTGTCGACCAGAGCGAGCTTGAG
AAATTCGATGGCGTGAGCGAAGGCAAATACACCATTGGTCTTGGTCAGAC
CAAGATGAGCTTCTGTGATGACCGTGAAGACATCTACTCCATTGCTTTGA
CCACCTTCTCCTCCCTTCTCCGCAAGTACAACATCGACCCCAACTCCATT
GGCCGCCTGGAGGTCGGTACCGAGACCTTGCTGGACAAGTCCAAGTCCGT
CAAGTCCGTCCTGATGCAGCTTCTGGCTCCCCACGGAAACACCAACGTTG
AGGGTGTTGACAACGTCAATGCTTGCTACGGTGGCACCAACGCTGTTTTC
AACAGCATCAACTGGCTCGAGTCCTCTGCCTGGGATGGCAGAGATGCCGT
TGTTGTCTGCGGTGACATTGCCCTGTACGCCGAGGGTGCTGCTCGCCCTA
CCGGTGGTGCTGGCTGTGTCGCCATGCTGATCGGTCCTGACGCCCCTATT
GTGTTCGAGCCCGGTCTTCGTGCCTCCTACGTCACCCACGCCTACGACTT
CTTCAAGCCCGACCTGACCAGCGAGTACCCTGTCGTGGATGGTCACTTCT
CCCTCAGATGCTACACTGAGGCTGTCGACGCTTGCTACAAGGCCTACAAT
GCTCGTGAGAAGACCTTGAAGGAGAAGGTTCAGAACGGTACCAACGGCAC
CGCCCAGGACGACTCCAAGACTGCCTTGGACCGCTTCGACTACCTCTGCT
ACCATGCTCCTACCTGCAAGCTGGTGCAGAAATCCTTCGCTCGTATGCTG
TACAACGACTACCTCACAAACCCCACTCACCCTGCTTTCGCCGAAGTGGC
TCCTGAGCTCCGTGATTTGGACTACGCCACCTCTCTCACTGACAAGAACG
TGGAGAAGACCTTCATGGGCCTGACCAAGAAGCGCTTCGCTGAGCGTGTT
AAGCCCGCTCTCGAGGTTGCCACTCTTTGCGGTAACATGTACACTGCCAC
CGTTTGGGCTGGTCTGGCTAGCTTGATCTCTCACGTCCCCTTCGATGCTA
GCGAGTCCAAGCGCATCGGTCTCTTCTCCTACGGCAGTGGTCTTGCCAGC
TCCCTGCTTAGCGTAAAGATTGTCGGAGACGTGTCCAACCTGGTGGAGAA
GCTCGATCTCAAGAACCGTCTTAGCAACCGCAACGTTCTCCCTCCTCAGT
CCTACGTTGACATGTGTGCCCTCCGTGAGCATGCTCACCTCAAGAAGAAC
TTCAAGCCTTCCGGCAACACCGAGACTCTCTACCCTGGTACTTACTACTT
GACTGAGGTGGACGATATGTTCCGCCGCAAGTACGACGTCAAGGCATGAA
TGGCTGCCCGTCCTCAGAACATTGGTATCAAGGCCATTGAGGTCTACTTC
CCTCGTCAGTGTGTCGACCAGAGCGAGCTTGAGAAATTCGATGGCGTGAG
CGAAGGCAAATACACCATTGGTCTTGGTCAGACCAAGATGAGCTTCTGTG
ATGACCGTGAAGACATCTACTCCATTGCTTTGACCACCTTCTCCTCCCTT
CTCCGCAAGTACAACATCGACCCCAACTCCATTGGCCGCCTGGAGGTCGG
TACCGAGACCTTGCTGGACAAGTCCAAGTCCGTCAAGTCCGTCCTGATGC
AGCTTCTGGCTCCCCACGGAAACACCAACGTTGAGGGTGTTGACAACGTC
AATGCTTGCTACGGTGGCACCAACGCTGTTTTCAACAGCATCAACTGGCT
CGAGTCCTCTGCCTGGGATGGCAGAGATGCCGTTGTTGTCTGCGGTGACA
TTGCCCTGTACGCCGAGGGTGCTGCTCGCCCTACCGGTGGTGCTGGCTGT
GTCGCCATGCTGATCGGTCCTGACGCCCCTATTGTGTTCGAGCCCGGTCT
TCGTGCCTCCTACGTCACCCACGCCTACGACTTCTTCAAGCCCGACCTGA
CCAGCGAGTACCCTGTCGTGGATGGTCACTTCTCCCTCAGATGCTACACT
GAGGCTGTCGACGCTTGCTACAAGGCCTACAATGCTCGTGAGAAGACCTT
GAAGGAGAAGGTTCAGAACGGTACCAACGGCACCGCCCAGGACGACTCCA
AGACTGCCTTGGACCGCTTCGACTACCTCTGCTACCATGCTCCTACCTGC
AAGCTGGTGCAGAAATCCTTCGCTCGTATGCTGTACAACGACTACCTCAC
AAACCCCACTCACCCTGCTTTCGCCGAAGTGGCTCCTGAGCTCCGTGATT
TGGACTACGCCACCTCTCTCACTGACAAGAACGTGGAGAAGACCTTCATG
GGCCTGACCAAGAAGCGCTTCGCTGAGCGTGTTAAGCCCGCTCTCGAGGT
TGCCACTCTTTGCGGTAACATGTACACTGCCACCGTTTGGGCTGGTCTGG
CTAGCTTGATCTCTCACGTCCCCTTCGATGCTAGCGAGTCCAAGCGCATC
GGTCTCTTCTCCTACGGCAGTGGTCTTGCCAGCTCCCTGCTTAGCGTAAA
GATTGTCGGAGACGTGTCCAACCTGGTGGAGAAGCTCGATCTCAAGAACC
GTCTTAGCAACCGCAACGTTCTCCCTCCTCAGTCCTACGTTGACATGTGT
GCCCTCCGTGAGCATGCTCACCTCAAGAAGAACTTCAAGCCTTCCGGCAA
CACCGAGACTCTCTACCCTGGTACTTACTACTTGACTGAGGTGGACGATA
TGTTCCGCCGCAAGTACGACGTCAAGGCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008299 | isoprenoid biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003824 | catalytic activity |
| GO:0004421 | hydroxymethylglutaryl-CoA synthase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000590 |
| DBxref | InterPro:IPR013528 |
| DBxref | InterPro:IPR016039 |
| DBxref | InterPro:IPR013746 |
| DBxref | InterPro:IPR010122 |
| DBxref | PFAM:PF01154 |
| DBxref | PFAM:PF08540 |
| Product | 3-hydroxy-3-methylglutaryl coenzyme A synthase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An02 | supercontig | An02:1469944..1471546 + |
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