CBS51388_001943-T1, CBS51388_001943-T1 (mRNA) Aspergillus niger CBS 513.88

Overview


Name	CBS51388_001943-T1
Unique Name	CBS51388_001943-T1
Type	mRNA
Organism	Aspergillus niger CBS 513.88

Sequences

The following sequences are available for this feature:

mRNA from alignment at An02:2201299..2203001+
coding sequence from alignment at An02:2201299..2203001+

mRNA from alignment at An02:2201299..2203001+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>CBS51388_001943-T1 ID=CBS51388_001943-T1|Name=CBS51388_001943-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1703bp|location=Sequence derived from alignment at An02:2201299..2203001+ (Aspergillus niger CBS 513.88)
ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGA
TCAGCCTCAGCCGCCGCCGCAACAACAACACCAACAACAACAACAATATG
CGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT
GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGGACCTCCTCA
GGGGCCCCCGCCAACCTACAACCAAGCTGTGTATGGGTTTGATGAAGCTT
TCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGGTA
GGTATCCCTATGTTTCCACATATAGAAGGTCAATACTAAACCTCTGGCAG
TTCATTGCCGTCTTCCTCGGCTACGTTGCAGTGTCCGGCGTGACCATCCA
TCGCTATGCGAAATACAAAGGCTTCAGCGGCGGCGGCATTTACGATGCGA
GCAACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTC
CTCTGTGTGGCCCTCGCCTTCTCATATGCCTACTTTCTCGGTGCGCGATA
CTTCTCCAAGCTCTTCATCTGGGTCACGGGCATCTTGAACATCGTCTTCG
CTCTCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGC
ATAGTCTTCCTCATTTTCGGCGTCTTCGCCATCGTCTGCTTCATCAGCTG
GATCCCCCGCATCCCGTTCACAGCCTACATGATGGAGGTCTCCATCGACG
TCTCGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTA
GTCGCCGTCGCCTTCGCCGCCTGGTTCTCCGTCACGCTCGTTTCGATCTA
CGTTGCCTACGAGCCCGACAGCACCGGCGTCAACCCGGCCTGCCCCAATG
GCTCCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTC
ACCTTTGCCATGTACTGGTTCAGCGAATGGCTCAAGAACACCGTACACAC
CACCATCGCCGGCGTCTACGGCTCCTGGTACTTCTTCGCCAACTCGCCGC
AAGGCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACC
TACTCCTTCGGCAGCATCAGCTTCGGTTCGCTCATTCTCGCCTTGATTCA
AATGCTCCGGCAGGCGTGCTCCATCGCGCAGCAGCAGGAAGCTGCCCAGG
GCAGTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCC
TTGCTCGATTGGCTCGTCACGTTCTTCAATCGCTACGCGTTCTGCCATAT
CGCCCTGTACGGGAAAGCATATATCCCCTCTGCCAAGGATACGTGGAAAA
TGATGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGT
CCGGTGTTGACGATGGGGTCCGTGTTCGTCTCGTATGTGTGCGCGCTGCT
GGCGTATTTGTATCTCCAGTTCACGAACCCTGGGTATAATCAGGGCGGGG
ATTTCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATT
TGTCAGATCTTTATGACCCCTGTGAGTAGTGGCATTGAAACTATCTTTGC
TGCTATGGCGTGGGATCCGCAGGTTTTGGTGCATGATCATTCCGAGATGT
ATTATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCT
TGA

Coding sequence (CDS) from alignment at An02:2201299..2203001+

>CBS51388_001943-T1 ID=CBS51388_001943-T1|Name=CBS51388_001943-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3300bp|location=Sequence derived from alignment at An02:2201299..2203001+ (Aspergillus niger CBS 513.88)
ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGA
TCAGCCTCAGCCGCCGCCGCAACAACAACACCAACAACAACAACAATATG
CGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT
GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGGACCTCCTCA
GGGGCCCCCGCCAACCTACAACCAAGCTGTGTATGGGTTTGATGAAGCTT
TCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGTTC
ATTGCCGTCTTCCTCGGCTACGTTGCAGTGTCCGGCGTGACCATCCATCG
CTATGCGAAATACAAAGGCTTCAGCGGCGGCGGCATTTACGATGCGAGCA
ACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTCCTC
TGTGTGGCCCTCGCCTTCTCATATGCCTACTTTCTCGGTGCGCGATACTT
CTCCAAGCTCTTCATCTGGGTCACGGGCATCTTGAACATCGTCTTCGCTC
TCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGCATA
GTCTTCCTCATTTTCGGCGTCTTCGCCATCGTCTGCTTCATCAGCTGGAT
CCCCCGCATCCCGTTCACAGCCTACATGATGGAGGTCTCCATCGACGTCT
CGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTAGTC
GCCGTCGCCTTCGCCGCCTGGTTCTCCGTCACGCTCGTTTCGATCTACGT
TGCCTACGAGCCCGACAGCACCGGCGTCAACCCGGCCTGCCCCAATGGCT
CCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTCACC
TTTGCCATGTACTGGTTCAGCGAATGGCTCAAGAACACCGTACACACCAC
CATCGCCGGCGTCTACGGCTCCTGGTACTTCTTCGCCAACTCGCCGCAAG
GCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACCTAC
TCCTTCGGCAGCATCAGCTTCGGTTCGCTCATTCTCGCCTTGATTCAAAT
GCTCCGGCAGGCGTGCTCCATCGCGCAGCAGCAGGAAGCTGCCCAGGGCA
GTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCCTTG
CTCGATTGGCTCGTCACGTTCTTCAATCGCTACGCGTTCTGCCATATCGC
CCTGTACGGGAAAGCATATATCCCCTCTGCCAAGGATACGTGGAAAATGA
TGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGTCCG
GTGTTGACGATGGGGTCCGTGTTCGTCTCGTATGTGTGCGCGCTGCTGGC
GTATTTGTATCTCCAGTTCACGAACCCTGGGTATAATCAGGGCGGGGATT
TCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATTTGT
CAGATCTTTATGACCCCTGTGAGTAGTGGCATTGAAACTATCTTTGCTGC
TATGGCGTGGGATCCGCAGGTTTTGGTGCATGATCATTCCGAGATGTATT
ATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCTTGA
ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGA
TCAGCCTCAGCCGCCGCCGCAACAACAACACCAACAACAACAACAATATG
CGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT
GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGGACCTCCTCA
GGGGCCCCCGCCAACCTACAACCAAGCTGTGTATGGGTTTGATGAAGCTT
TCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGTTC
ATTGCCGTCTTCCTCGGCTACGTTGCAGTGTCCGGCGTGACCATCCATCG
CTATGCGAAATACAAAGGCTTCAGCGGCGGCGGCATTTACGATGCGAGCA
ACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTCCTC
TGTGTGGCCCTCGCCTTCTCATATGCCTACTTTCTCGGTGCGCGATACTT
CTCCAAGCTCTTCATCTGGGTCACGGGCATCTTGAACATCGTCTTCGCTC
TCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGCATA
GTCTTCCTCATTTTCGGCGTCTTCGCCATCGTCTGCTTCATCAGCTGGAT
CCCCCGCATCCCGTTCACAGCCTACATGATGGAGGTCTCCATCGACGTCT
CGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTAGTC
GCCGTCGCCTTCGCCGCCTGGTTCTCCGTCACGCTCGTTTCGATCTACGT
TGCCTACGAGCCCGACAGCACCGGCGTCAACCCGGCCTGCCCCAATGGCT
CCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTCACC
TTTGCCATGTACTGGTTCAGCGAATGGCTCAAGAACACCGTACACACCAC
CATCGCCGGCGTCTACGGCTCCTGGTACTTCTTCGCCAACTCGCCGCAAG
GCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACCTAC
TCCTTCGGCAGCATCAGCTTCGGTTCGCTCATTCTCGCCTTGATTCAAAT
GCTCCGGCAGGCGTGCTCCATCGCGCAGCAGCAGGAAGCTGCCCAGGGCA
GTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCCTTG
CTCGATTGGCTCGTCACGTTCTTCAATCGCTACGCGTTCTGCCATATCGC
CCTGTACGGGAAAGCATATATCCCCTCTGCCAAGGATACGTGGAAAATGA
TGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGTCCG
GTGTTGACGATGGGGTCCGTGTTCGTCTCGTATGTGTGCGCGCTGCTGGC
GTATTTGTATCTCCAGTTCACGAACCCTGGGTATAATCAGGGCGGGGATT
TCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATTTGT
CAGATCTTTATGACCCCTGTGAGTAGTGGCATTGAAACTATCTTTGCTGC
TATGGCGTGGGATCCGCAGGTTTTGGTGCATGATCATTCCGAGATGTATT
ATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCTTGA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PNS1	CBS51388_001943	Aspergillus niger CBS 513.88	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_001943-T1.exon1	CBS51388_001943-T1.exon1	Aspergillus niger CBS 513.88	exon
CBS51388_001943-T1.exon2	CBS51388_001943-T1.exon2	Aspergillus niger CBS 513.88	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_001943-T1.cds	CBS51388_001943-T1.cds	Aspergillus niger CBS 513.88	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_001943-T1	CBS51388_001943-T1-protein	Aspergillus niger CBS 513.88	polypeptide

Properties


Property Name	Value
DBxref	InterPro:IPR007603
DBxref	PFAM:PF04515
Product	neither null mutation nor overexpression affects choline transport
Product	Putative choline transporter

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Aspergillus niger CBS 513.88 whole genome analysis	2021-11-01

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
An02	supercontig	An02:2201299..2203001 +

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CBS51388_001943-T1, CBS51388_001943-T1 (mRNA) Aspergillus niger CBS 513.88