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Sequences
The following sequences are available for this feature:
mRNA from alignment at An02:2287846..2289890+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001969-T1 ID=CBS51388_001969-T1|Name=CBS51388_001969-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2045bp|location=Sequence derived from alignment at An02:2287846..2289890+ (Aspergillus niger CBS 513.88)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAA
GAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTC
CATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGC
ACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCC
TTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAG
CGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCT
CTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCA
TGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAG
AACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGC
CAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACC
CCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAA
CGCACACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGATCCTG
TAACTGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCCA
ACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGC
TCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACC
TCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCG
CTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTT
CGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCC
GTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCT
TCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGG
CCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACT
ACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCAC
ACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACG
TAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCT
TCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTC
CGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCT
GAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGC
TCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGC
GAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGC
GGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGA
GCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAG
CAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCG
ACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGA
ACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAG
GCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA back to topCoding sequence (CDS) from alignment at An02:2287846..2289890+ >CBS51388_001969-T1 ID=CBS51388_001969-T1|Name=CBS51388_001969-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5859bp|location=Sequence derived from alignment at An02:2287846..2289890+ (Aspergillus niger CBS 513.88)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCTGACATC
GTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATG
ATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTT
GTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAG
TACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGAC
TGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTC
GAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAA
GGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGG
GGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTT
GGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGG
TGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACCTCACAG
CTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTC
GAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGT
CGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAAC
TGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTC
AACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGT
TGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTG
ACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGA
CGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGA
GGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGT
ATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAA
ACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCA
GAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCA
GCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGG
GGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGA
CCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACA
AACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAAC
GGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGT
CGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGG
AGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAG
GAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCG
GGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGG
AATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGAC
TGAATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGG
AGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGG
GCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATG
GCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTT
GTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCAC
TCAAGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTC
ATACCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCTGAC
ATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCG
ATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAA
GTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTT
GAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGAC
GACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCT
TTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATT
CAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCA
CGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGG
GTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTC
AGGTGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACCTCA
CAGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCA
CTCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGG
TGTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCC
AACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAAC
TTCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGA
CGTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGA
TTGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCC
GGACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCG
AGAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCAC
CGTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACC
GAAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGG
CCAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTA
GCAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCA
TGGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGG
TGACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGG
ACAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAG
AACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAG
CGTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTC
GGGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACG
GAGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGAT
CCGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATA
AGGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTT
GACTGAATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGA
CGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTA
TGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTC
ATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGAC
CTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAAC
CACTCAAGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTG
GTCATACCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCT
GACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCT
CCGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTC
AAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGA
TTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAG
GACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCG
TCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGG
ATTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGC
GCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTT
CGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCAC
TTCAGGTGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACC
TCACAGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTAC
TCACTCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTC
GGGTGTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACT
TCCAACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAG
AACTTCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCAC
CGACGTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATAC
AGATTGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGT
GCCGGACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGG
CCGAGAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCG
CACCGTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCC
ACCGAAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAG
GGGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGG
CTAGCAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAAT
GCATGGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCA
AGGTGACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACA
AGGACAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCC
GAGAACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGA
GAGCGTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGC
GTCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATG
ACGGAGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCA
GATCCGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAG
ATAAGGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGG
TTTGACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR025313 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001650 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF13959 |
| DBxref | PFAM:PF00270 |
| Product | ATP-dependent rRNA helicase spb4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An02 | supercontig | An02:2287846..2289890 + |
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