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Sequences
The following sequences are available for this feature:
mRNA from alignment at An02:2296386..2297353+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_001972-T1 ID=CBS51388_001972-T1|Name=CBS51388_001972-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=968bp|location=Sequence derived from alignment at An02:2296386..2297353+ (Aspergillus niger CBS 513.88)
ATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACAT
TGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGT
CTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTC
ATCAACATTGGCAAGACCTGGTATGTTGATCAGGCAATATATTGCGCGCA
ACTCATTTAGGATCGCTGCCTAACACCGCGCGAAAACTTAGGGAGAAGAT
CCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGGCCGACATCT
GTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTGAAGTTCGCC
TCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCCCGGTAACTT
CACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGATCATCGTCA
CCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGCTACGTCAAC
ATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGACTTCGTTGA
CGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCGGTCTCGTCT
GGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACCCTCGCTTCC
CGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTACCGTGACCC
CGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTGCCAGCGCTG
AGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGTGAGAACTGG
GATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTTCGCTGCTGC
TAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTGGCGACTGGG
CTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAGGCCCAGCCC
ACCGAGGCTAAGTGGTAA back to topCoding sequence (CDS) from alignment at An02:2296386..2297353+ >CBS51388_001972-T1 ID=CBS51388_001972-T1|Name=CBS51388_001972-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1794bp|location=Sequence derived from alignment at An02:2296386..2297353+ (Aspergillus niger CBS 513.88)
ATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACAT
TGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGT
CTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTC
ATCAACATTGGCAAGACCTGGGAGAAGATCCTCCTCGCTGCCCGTATCAT
CGCCGCCATCGACAACCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCT
ACGGCCAGCGTGCTGTCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCC
ATTGCTGGTCGTTTCACCCCCGGTAACTTCACCAACTACATCACCCGCTC
TTTCAAGGAGCCCCGCCTGATCATCGTCACCGACCCTCGCACCGACGCCC
AGGCCATCAAGGAGGCCAGCTACGTCAACATCCCCGTCATTGCCCTTTGC
GACACTGACTCCCCCACCGACTTCGTTGACGTTGCTATCCCCACCAACAA
CAAGGGTCGCCACGCCATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGG
TCCTCCGCCTCCGTGGTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTC
GTTGTCGACCTGTACTTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGA
GGTCGTCGAGGAGAAGGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCA
TCGAGTCCGGCTTCGCTGGTGAGAACTGGGATGTTGCCGGTGCCGGTGCC
GGTGTTCCTGGCACTGCTTTCGCTGCTGCTAGCGCTGCTGCTGGTGCTGC
CAGCTGGGAGGCCGAGGGTGGCGACTGGGCTGCCAGCTCTGCCGCTCCTG
CTGGTGAGAGCTGGGCTGAGGCCCAGCCCACCGAGGCTAAGTGGTAAATG
GCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACATTGA
GATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGTCTC
ACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTCATC
AACATTGGCAAGACCTGGGAGAAGATCCTCCTCGCTGCCCGTATCATCGC
CGCCATCGACAACCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCTACG
GCCAGCGTGCTGTCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCCATT
GCTGGTCGTTTCACCCCCGGTAACTTCACCAACTACATCACCCGCTCTTT
CAAGGAGCCCCGCCTGATCATCGTCACCGACCCTCGCACCGACGCCCAGG
CCATCAAGGAGGCCAGCTACGTCAACATCCCCGTCATTGCCCTTTGCGAC
ACTGACTCCCCCACCGACTTCGTTGACGTTGCTATCCCCACCAACAACAA
GGGTCGCCACGCCATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCC
TCCGCCTCCGTGGTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTCGTT
GTCGACCTGTACTTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGAGGT
CGTCGAGGAGAAGGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCG
AGTCCGGCTTCGCTGGTGAGAACTGGGATGTTGCCGGTGCCGGTGCCGGT
GTTCCTGGCACTGCTTTCGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAG
CTGGGAGGCCGAGGGTGGCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTG
GTGAGAGCTGGGCTGAGGCCCAGCCCACCGAGGCTAAGTGGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023591 |
| DBxref | InterPro:IPR027498 |
| DBxref | InterPro:IPR018130 |
| DBxref | InterPro:IPR032281 |
| DBxref | InterPro:IPR005707 |
| DBxref | InterPro:IPR001865 |
| DBxref | PFAM:PF16122 |
| Product | structural constituent of ribosome |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An02 | supercontig | An02:2296386..2297353 + |
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