You are here

Home

CBS51388_002018-T1, CBS51388_002018-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002018-T1
Unique NameCBS51388_002018-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:2449240..2450130+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002018-T1 ID=CBS51388_002018-T1|Name=CBS51388_002018-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=891bp|location=Sequence derived from alignment at An02:2449240..2450130+ (Aspergillus niger CBS 513.88)
ATGTCGCCCATCTCCGTCTTCCGCATCGCGACCCGCGCCGTCCGCCCTTC
CGGCTTCATCAGAGCGGCTCAATTGCCCCGTCCCCGGGTGCAGGCCCCCG
TTGCTCTGGCTATCGCCCGTCCCAGCTTCAGCACCTCCGCTAAGCGCTTC
GGCGGTCACCACGAGGACGAGACATACGAGGAGTTCTCTGCCAGGTATGC
AACTATCTCCCATGAAGCCATTGGGTTCCGACGCTCCCTGCGGTGCACGA
TTCCCAATCACAGGGATTCCCACTACCAGTTCCCCGAGACAATTCACACA
TCTTTCTTGATAATACCACACCAACCCGCGAGTTCCGCCCATATAACTAA
CCACATCTGCCGGTAGATTCGAGAAGGAATTCGACGGTGTTCAGGATGTC
TTCGAGCTCCAGGTAAGCTAATCTGCCCATATTGCATGATTCCAATTCGT
CCCTATCAATTCCCTTCCCCATAATCAGCAAAGCTGCCATTGGCAGATAA
AACCGGACCGTCCGCAGCCCCTTGGCGCCATATCAGACACCTTTGCTGAC
AAGTTACTGTTCTCCCATCCAGCGTAATCTCAACAACTGCTTCGCCTACG
ATCTCGTTCCCTCCGTTGAGGTCCTTACCGCTGCTCTGAAGGCTGCTCGT
CGCGTCAACGACTACCCCACCGCTGTCCGGATCTTCGAGGGTGCGCTTCC
TCCTCCCCATTCCATCACCGTTTCCTTCCCATGACAATTGAACTTACAAT
GTTTTTCTTTCTCTACAAATAGGTGTCAAGGCCAAGGTCGAGACTCAGGA
GCAGTACAAGCAATACCTTGAGGCCCTTGAGGGTCTCCGCCAGGAGCTGG
GTGTTGCTCTCCGTGAGGAGCTCTACCCCGAGGAGGCGTAA
back to top

Coding sequence (CDS) from alignment at An02:2449240..2450130+

>CBS51388_002018-T1 ID=CBS51388_002018-T1|Name=CBS51388_002018-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1908bp|location=Sequence derived from alignment at An02:2449240..2450130+ (Aspergillus niger CBS 513.88)
ATGTCGCCCATCTCCGTCTTCCGCATCGCGACCCGCGCCGTCCGCCCTTC
CGGCTTCATCAGAGCGGCTCAATTGCCCCGTCCCCGGGTGCAGGCCCCCG
TTGCTCTGGCTATCGCCCGTCCCAGCTTCAGCACCTCCGCTAAGCGCTTC
GGCGGTCACCACGAGGACGAGACATACGAGGAGTTCTCTGCCAGATTCGA
GAAGGAATTCGACGGTGTTCAGGATGTCTTCGAGCTCCAGCGTAATCTCA
ACAACTGCTTCGCCTACGATCTCGTTCCCTCCGTTGAGGTCCTTACCGCT
GCTCTGAAGGCTGCTCGTCGCGTCAACGACTACCCCACCGCTGTCCGGAT
CTTCGAGGGTGTCAAGGCCAAGGTCGAGACTCAGGAGCAGTACAAGCAAT
ACCTTGAGGCCCTTGAGGGTCTCCGCCAGGAGCTGGGTGTTGCTCTCCGT
GAGGAGCTCTACCCCGAGGAGGCGTAAATGTCGCCCATCTCCGTCTTCCG
CATCGCGACCCGCGCCGTCCGCCCTTCCGGCTTCATCAGAGCGGCTCAAT
TGCCCCGTCCCCGGGTGCAGGCCCCCGTTGCTCTGGCTATCGCCCGTCCC
AGCTTCAGCACCTCCGCTAAGCGCTTCGGCGGTCACCACGAGGACGAGAC
ATACGAGGAGTTCTCTGCCAGATTCGAGAAGGAATTCGACGGTGTTCAGG
ATGTCTTCGAGCTCCAGCGTAATCTCAACAACTGCTTCGCCTACGATCTC
GTTCCCTCCGTTGAGGTCCTTACCGCTGCTCTGAAGGCTGCTCGTCGCGT
CAACGACTACCCCACCGCTGTCCGGATCTTCGAGGGTGTCAAGGCCAAGG
TCGAGACTCAGGAGCAGTACAAGCAATACCTTGAGGCCCTTGAGGGTCTC
CGCCAGGAGCTGGGTGTTGCTCTCCGTGAGGAGCTCTACCCCGAGGAGGC
GTAAATGTCGCCCATCTCCGTCTTCCGCATCGCGACCCGCGCCGTCCGCC
CTTCCGGCTTCATCAGAGCGGCTCAATTGCCCCGTCCCCGGGTGCAGGCC
CCCGTTGCTCTGGCTATCGCCCGTCCCAGCTTCAGCACCTCCGCTAAGCG
CTTCGGCGGTCACCACGAGGACGAGACATACGAGGAGTTCTCTGCCAGAT
TCGAGAAGGAATTCGACGGTGTTCAGGATGTCTTCGAGCTCCAGCGTAAT
CTCAACAACTGCTTCGCCTACGATCTCGTTCCCTCCGTTGAGGTCCTTAC
CGCTGCTCTGAAGGCTGCTCGTCGCGTCAACGACTACCCCACCGCTGTCC
GGATCTTCGAGGGTGTCAAGGCCAAGGTCGAGACTCAGGAGCAGTACAAG
CAATACCTTGAGGCCCTTGAGGGTCTCCGCCAGGAGCTGGGTGTTGCTCT
CCGTGAGGAGCTCTACCCCGAGGAGGCGTAAATGTCGCCCATCTCCGTCT
TCCGCATCGCGACCCGCGCCGTCCGCCCTTCCGGCTTCATCAGAGCGGCT
CAATTGCCCCGTCCCCGGGTGCAGGCCCCCGTTGCTCTGGCTATCGCCCG
TCCCAGCTTCAGCACCTCCGCTAAGCGCTTCGGCGGTCACCACGAGGACG
AGACATACGAGGAGTTCTCTGCCAGATTCGAGAAGGAATTCGACGGTGTT
CAGGATGTCTTCGAGCTCCAGCGTAATCTCAACAACTGCTTCGCCTACGA
TCTCGTTCCCTCCGTTGAGGTCCTTACCGCTGCTCTGAAGGCTGCTCGTC
GCGTCAACGACTACCCCACCGCTGTCCGGATCTTCGAGGGTGTCAAGGCC
AAGGTCGAGACTCAGGAGCAGTACAAGCAATACCTTGAGGCCCTTGAGGG
TCTCCGCCAGGAGCTGGGTGTTGCTCTCCGTGAGGAGCTCTACCCCGAGG
AGGCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
COX6CBS51388_002018Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002018-T1.exon1CBS51388_002018-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_002018-T1.exon2CBS51388_002018-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002018-T1.exon3CBS51388_002018-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002018-T1.exon4CBS51388_002018-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002018-T1.cdsCBS51388_002018-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002018-T1CBS51388_002018-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926522L
DBxrefInterPro:IPR036545
DBxrefInterPro:IPR003204
DBxrefPFAM:PF02284
ProductCytochrome c oxidase subunit 6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:2449240..2450130 +
Powered by Drupal