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CBS51388_002182-T1, CBS51388_002182-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002182-T1
Unique NameCBS51388_002182-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:2950057..2950925-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002182-T1 ID=CBS51388_002182-T1|Name=CBS51388_002182-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=869bp|location=Sequence derived from alignment at An02:2950057..2950925- (Aspergillus niger CBS 513.88)
ATGCCTTCGGAACAAGGTCACAGACGTGAGTGCCATCATTTTCCGGATAT
CAGACATGTGTGCGCGATGGTTGGAATATGGGGATGCCGGAGGATAGATG
GGAATTTGCGGGCGCAACCTGGGCGAAGTGCTGAATGAAATGCTAACTCG
AGATTTTTGCGAAATATAGTCTATGTCAAGTAAGTTTACCACAAACCGTC
CGCCGTCGAATCCGCGCACATTCCGGATATGAATATCAAAAATATCAAAA
TACATGTCGGGACATCAGAGATACGGGCCAAGCGAAGGAATGCAACGAGA
ACAGACCGGTTAATACGAATTCTTTCTACAGGGGTCGCCACGTGAGCTAC
CAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGGTACTTGCGATCCGC
ACCGATATCGATATAGAGGAACAAGGGAATCTGACACATGGGTTATCTAG
TCTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAAAGTGAGTAG
CGAACGGGTTCGGAATGGGAATATCAGAACACACAGCTAAGACGACATTC
TTTTACAGCTTCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAA
GCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCC
GTCCCCACGGTATGTGATGCTCAGCTCCAATGCGCGATGATTACGATGGA
ATATTTCAATACTATCGGTGATTGTTGGAACCGAGAACGGCGGGAAACTA
ACGATATTTCCTCATGAACAGGTAACTCCGGTGTTGTCCGTGCTCAGTTC
CGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGCT
GTACCCCTCCAACATCTAA
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Coding sequence (CDS) from alignment at An02:2950057..2950925-

>CBS51388_002182-T1 ID=CBS51388_002182-T1|Name=CBS51388_002182-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1980bp|location=Sequence derived from alignment at An02:2950057..2950925- (Aspergillus niger CBS 513.88)
GTAACTCCGGTGTTGTCCGTGCTCAGTTCCGCCACAACCTCCCCCCCAAG
ACCTTCGGTGCTACCGTCCGTGTTATGCTGTACCCCTCCAACATCTAACT
TCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTC
CGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCCGTCCCCACGT
CTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAAAGGGTCGCCA
CGTGAGCTACCAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGTCTAT
GTCAAATGCCTTCGGAACAAGGTCACAGACGTAACTCCGGTGTTGTCCGT
GCTCAGTTCCGCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTCCG
TGTTATGCTGTACCCCTCCAACATCTAACTTCTACCTGGGCAAGAAGGTT
GCTTTCGTCTACCGGGCCAAGCGTGAGGTCCGGGGCTCCAACATCCGGGT
CATCTGGGGCAAGGTTACCCGTCCCCACGTCTGATCAAGATCGACGGTGT
TGAGAGCACCGAGGCCGCAAAGGGTCGCCACGTGAGCTACCAGCGCTCCA
AGCGTACCGTCAACCCCAACACCAGTCTATGTCAAATGCCTTCGGAACAA
GGTCACAGACGTAACTCCGGTGTTGTCCGTGCTCAGTTCCGCCACAACCT
CCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGCTGTACCCCTCCA
ACATCTAACTTCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAA
GCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCC
GTCCCCACGTCTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAA
AGGGTCGCCACGTGAGCTACCAGCGCTCCAAGCGTACCGTCAACCCCAAC
ACCAGTCTATGTCAAATGCCTTCGGAACAAGGTCACAGACGTAACTCCGG
TGTTGTCCGTGCTCAGTTCCGCCACAACCTCCCCCCCAAGACCTTCGGTG
CTACCGTCCGTGTTATGCTGTACCCCTCCAACATCTAACTTCTACCTGGG
CAAGAAGGTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTCCGGGGCTCCA
ACATCCGGGTCATCTGGGGCAAGGTTACCCGTCCCCACGTCTGATCAAGA
TCGACGGTGTTGAGAGCACCGAGGCCGCAAAGGGTCGCCACGTGAGCTAC
CAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGTCTATGTCAAATGCC
TTCGGAACAAGGTCACAGACGTAACTCCGGTGTTGTCCGTGCTCAGTTCC
GCCACAACCTCCCCCCCAAGACCTTCGGTGCTACCGTCCGTGTTATGCTG
TACCCCTCCAACATCTAACTTCTACCTGGGCAAGAAGGTTGCTTTCGTCT
ACCGGGCCAAGCGTGAGGTCCGGGGCTCCAACATCCGGGTCATCTGGGGC
AAGGTTACCCGTCCCCACGTCTGATCAAGATCGACGGTGTTGAGAGCACC
GAGGCCGCAAAGGGTCGCCACGTGAGCTACCAGCGCTCCAAGCGTACCGT
CAACCCCAACACCAGTCTATGTCAAATGCCTTCGGAACAAGGTCACAGAC
GTAACTCCGGTGTTGTCCGTGCTCAGTTCCGCCACAACCTCCCCCCCAAG
ACCTTCGGTGCTACCGTCCGTGTTATGCTGTACCCCTCCAACATCTAACT
TCTACCTGGGCAAGAAGGTTGCTTTCGTCTACCGGGCCAAGCGTGAGGTC
CGGGGCTCCAACATCCGGGTCATCTGGGGCAAGGTTACCCGTCCCCACGT
CTGATCAAGATCGACGGTGTTGAGAGCACCGAGGCCGCAAAGGGTCGCCA
CGTGAGCTACCAGCGCTCCAAGCGTACCGTCAACCCCAACACCAGTCTAT
GTCAAATGCCTTCGGAACAAGGTCACAGAC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL33BCBS51388_002182Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002182-T1CBS51388_002182-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002182-T1.cdsCBS51388_002182-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002182-T1.exon6CBS51388_002182-T1.exon6Aspergillus niger CBS 513.88exon
CBS51388_002182-T1.exon5CBS51388_002182-T1.exon5Aspergillus niger CBS 513.88exon
CBS51388_002182-T1.exon4CBS51388_002182-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_002182-T1.exon3CBS51388_002182-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002182-T1.exon2CBS51388_002182-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002182-T1.exon1CBS51388_002182-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR018266
DBxrefInterPro:IPR038661
DBxrefInterPro:IPR001780
DBxrefPFAM:PF01247
Product60S ribosomal protein L33B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:2950057..2950925 -
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