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CBS51388_002206-T1, CBS51388_002206-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002206-T1
Unique NameCBS51388_002206-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:3016104..3017555-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002206-T1 ID=CBS51388_002206-T1|Name=CBS51388_002206-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1452bp|location=Sequence derived from alignment at An02:3016104..3017555- (Aspergillus niger CBS 513.88)
ATGTCTAATGGCATGGCAATTGGAGACCCTGAACCTCGGGAGCGCAACAT
TATGTTGTAATATAAGTAAGGGTACGTATGCAAGTGTTACTGGTTATTCA
GTGAGCTACTGGCTATTCACGCATCGTCATGTCTGTCTTCAAGGCATCAT
TCCTATTTCTTCTTTCCTCCTCACTAGTCCACGGGGTTCCACACTCCAGC
AGAGCATCTCGGAGCCAACAATGCGTGGTTCCGTCCAAATACCAGGCATC
GAATGGAATGGCTGATGACTCGGGTTGCTGTCTCCCAGGCCTTTGCACAA
TGCGCGACTGACTCGGGTTATTATTTTCGAGGAGGGTGTCAACTATAACA
TCTTTCAGCCGATCACCGCCACCAACCTCAGCAATGTGGAAATCCGGATG
CACGGCAACCTGCATCTGCCACAGAATATCACTGCGGTGCAGAATATAGT
CAGTGACGGTACTTCTACATGGTTTACCCTAGAAGGACCAAAAGTGGACT
GGATTGGTCCTGAAGACGTGAACAATGGTTGGATTGACTCGTACGGACAA
CCGTGGTGGGATGCGAACCCTGCAGGTAGTTCAGGCATCGATAACCGTCC
GCATCTCATGAGCTTCAAGTCTAGCCAAGCCACTATGAAATACTTCAGGT
CTAGGAAGCCCATCGCCTGGAATGTCAAACTGCATGGACAAGACATTACA
GTCAGCCACGCTATTATCGACGCTACCTCGACAGGTAGCTTCCCATTCAA
CACTGACGGTTTCGATGTTGAGGGTACCAATATCCAGATCACCGACAGTA
TCATGTACAACGGCGACGATGCGATTGCAGTAGGCGCGGACTCGCACGAC
ACACTTTTCACAAGAAACACCATCGGCTACCAGACTCACGGCATGAGCAT
GGATCGCTGGGAAAGGATCCCACAGACTTCGCCAATATCAGCAACATCCG
CTTTGACGATGTGACTGTTGTCGATGGGCTCTACGCAGCACGCTTCAAGT
CATGGAGCGGAGGGACCGGACTCGTCAAGAATGTGACCTGGAACAATATT
AGAGTCTTCAACGTGACGTTCCCGATCTTTGTGACTCAGAGTTATAGCGA
CCAAGGCGCCTCCCGGTCTGGAACTGTCAATGCTAGTTCGGCTGTGATGA
TGGAGGATTTTACCTGGTCTGACTTTGCTGGCTCGATCAATACGTACCAG
CCTGGTGACGGTTCTTGCGTTTCCGACCCTTGCTGGTACAACGTTGGGCT
GCCAAATTTGAAGCATACGGAGGCCCTCATTATCGAATGCCATACTGCTC
AATCTTGTAAGAACTTTGTGACGGACAACATCCAGCTATACCCGCAGGTT
CTGGAACCAGCGAGTGTGATCTGCATGAACGCAACGGCAGCCCTCAATCC
TGATCTTGGATTTACATGTAAAAACGGGACCTACAGCCCATTATCTAATT
AA
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Coding sequence (CDS) from alignment at An02:3016104..3017555-

>CBS51388_002206-T1 ID=CBS51388_002206-T1|Name=CBS51388_002206-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3456bp|location=Sequence derived from alignment at An02:3016104..3017555- (Aspergillus niger CBS 513.88)
CATGGATCGCTGGGAAAGGATCCCACAGACTTCGCCAATATCAGCAACAT
CCGCTTTGACGATGTGACTGTTGTCGATGGGCTCTACGCAGCACGCTTCA
AGTCATGGAGCGGAGGGACCGGACTCGTCAAGAATGTGACCTGGAACAAT
ATTAGAGTCTTCAACGTGACGTTCCCGATCTTTGTGACTCAGAGTTATAG
CGACCAAGGCGCCTCCCGGTCTGGAACTGTCAATGCTAGTTCGGCTGTGA
TGATGGAGGATTTTACCTGGTCTGACTTTGCTGGCTCGATCAATACGTAC
CAGCCTGGTGACGGTTCTTGCGTTTCCGACCCTTGCTGGTACAACGTTGG
GCTGCCAAATTTGAAGCATACGGAGGCCCTCATTATCGAATGCCATACTG
CTCAATCTTGTAAGAACTTTGTGACGGACAACATCCAGCTATACCCGCAG
GTTCTGGAACCAGCGAGTGTGATCTGCATGAACGCAACGGCAGCCCTCAA
TCCTGATCTTGGATTTACATGTAAAAACGGGACCTACAGCCCATTATCTA
ATTAAGCCTTTGCACAATGCGCGACTGACTCGGGTTATTATTTTCGAGGA
GGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCAGCA
ATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATCACT
GCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCTAGA
AGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTTGGA
TTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGTTCA
GGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGCCAC
TATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAACTGC
ATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCGACA
GGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAATAT
CCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAATGT
CTAATGGCATGGCAATTGGAGACCCTGAACCTCGGGAGCGCAACATTATG
TTCATGGATCGCTGGGAAAGGATCCCACAGACTTCGCCAATATCAGCAAC
ATCCGCTTTGACGATGTGACTGTTGTCGATGGGCTCTACGCAGCACGCTT
CAAGTCATGGAGCGGAGGGACCGGACTCGTCAAGAATGTGACCTGGAACA
ATATTAGAGTCTTCAACGTGACGTTCCCGATCTTTGTGACTCAGAGTTAT
AGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCAATGCTAGTTCGGCTGT
GATGATGGAGGATTTTACCTGGTCTGACTTTGCTGGCTCGATCAATACGT
ACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCCTTGCTGGTACAACGTT
GGGCTGCCAAATTTGAAGCATACGGAGGCCCTCATTATCGAATGCCATAC
TGCTCAATCTTGTAAGAACTTTGTGACGGACAACATCCAGCTATACCCGC
AGGTTCTGGAACCAGCGAGTGTGATCTGCATGAACGCAACGGCAGCCCTC
AATCCTGATCTTGGATTTACATGTAAAAACGGGACCTACAGCCCATTATC
TAATTAAGCCTTTGCACAATGCGCGACTGACTCGGGTTATTATTTTCGAG
GAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCAG
CAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATCA
CTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCTA
GAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTTG
GATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGTT
CAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGCC
ACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAACT
GCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCGA
CAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAAT
ATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAAT
GTCTAATGGCATGGCAATTGGAGACCCTGAACCTCGGGAGCGCAACATTA
TGTTCATGGATCGCTGGGAAAGGATCCCACAGACTTCGCCAATATCAGCA
ACATCCGCTTTGACGATGTGACTGTTGTCGATGGGCTCTACGCAGCACGC
TTCAAGTCATGGAGCGGAGGGACCGGACTCGTCAAGAATGTGACCTGGAA
CAATATTAGAGTCTTCAACGTGACGTTCCCGATCTTTGTGACTCAGAGTT
ATAGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCAATGCTAGTTCGGCT
GTGATGATGGAGGATTTTACCTGGTCTGACTTTGCTGGCTCGATCAATAC
GTACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCCTTGCTGGTACAACG
TTGGGCTGCCAAATTTGAAGCATACGGAGGCCCTCATTATCGAATGCCAT
ACTGCTCAATCTTGTAAGAACTTTGTGACGGACAACATCCAGCTATACCC
GCAGGTTCTGGAACCAGCGAGTGTGATCTGCATGAACGCAACGGCAGCCC
TCAATCCTGATCTTGGATTTACATGTAAAAACGGGACCTACAGCCCATTA
TCTAATTAAGCCTTTGCACAATGCGCGACTGACTCGGGTTATTATTTTCG
AGGAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTC
AGCAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATAT
CACTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCC
TAGAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGT
TGGATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAG
TTCAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAG
CCACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAA
CTGCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTC
GACAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCA
ATATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCA
ATGTCTAATGGCATGGCAATTGGAGACCCTGAACCTCGGGAGCGCAACAT
TATGTT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002206CBS51388_002206Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002206-T1CBS51388_002206-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002206-T1.cdsCBS51388_002206-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002206-T1.exon3CBS51388_002206-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002206-T1.exon2CBS51388_002206-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002206-T1.exon1CBS51388_002206-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:3016104..3017555 -
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