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CBS51388_002318-T1, CBS51388_002318-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002318-T1
Unique NameCBS51388_002318-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:3342005..3342949-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002318-T1 ID=CBS51388_002318-T1|Name=CBS51388_002318-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=945bp|location=Sequence derived from alignment at An02:3342005..3342949- (Aspergillus niger CBS 513.88)
ATGGCCCCCGTCCCGTGAGTATACGACCGGCGATCAACCACATCTGTATC
GCATCATTCTAATGGCAATTTTCTCAACAGCCGCGTTTACTCCAAGACCT
ACAAGGTCCCCCGTCGTCGTAAGTAGCCTTATCAGTCTTTGCAAAAATTC
GAGACTTTGCGACATTGAATCTTGGACTAACATATCGGTATAGCTTTCGA
GTCGGCCCGTCTGTTAGTACTCTCCGGCCACTGATCAGAAGCGTGCTTCT
GTTTATGTCGTGTGTTCCCATGTCTAACTGTCATCGCTAGTGACTCGGAA
CTGAAGATTGTCGGCGAGTACGGCCTGCGCAACAAGCGTGAGGTGTGGCG
TGTCCAGCTCACCCTGTCCAAGATTCGTCGTGCTGCTCGGTATGCGCACC
CCACTTCGCATGGATCATCGACCTTGAGAATGGCCAGGAGAAATTGATGG
AACAATGGCTGACTGTTAGAACAGTGAGCTTCTCACCCTCGACGAGAAGG
ACCCCAAGCGTCTTTTCGAAGGTAACGCTTTGATTCGCCGTCTGGTCCGC
ATCGGTGTCCTCGATGAGTCCCGCATGAAGCTCGATTACGTCCTGGCCCT
CCGCGTTGAGGACTTCTTGGAGCGTCGTCTTCAGACTTGCGTCTACAAGC
TCGGCCTTGCCAAGTCCATCCACCACGCCCGTGTCCTGATCAAGCAGCGT
CACATCCGGTATGCGCATCCGATAACTTTTTCGCCCGATGACGCCAAGTT
GCTAACTCGAACAACAGTGTCGGCAAGCAGATCGTCAACGTCCCCTCCTA
CATGGTCCGCCTGGACTCCCAGAAGCACATCGACTTCGCCCTCACCTCCC
CCTACGGTGGTGGCCGCCCTGGCCGTGTCCAGCGCAAGAAGGCTGCCGCT
GCTGCCGGTGGTGGTGACGACGAGGCTGAGGAGGATGAGGAGTAA
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Coding sequence (CDS) from alignment at An02:3342005..3342949-

>CBS51388_002318-T1 ID=CBS51388_002318-T1|Name=CBS51388_002318-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3492bp|location=Sequence derived from alignment at An02:3342005..3342949- (Aspergillus niger CBS 513.88)
TGTCGGCAAGCAGATCGTCAACGTCCCCTCCTACATGGTCCGCCTGGACT
CCCAGAAGCACATCGACTTCGCCCTCACCTCCCCCTACGGTGGTGGCCGC
CCTGGCCGTGTCCAGCGCAAGAAGGCTGCCGCTGCTGCCGGTGGTGGTGA
CGACGAGGCTGAGGAGGATGAGGAGTAATGAGCTTCTCACCCTCGACGAG
AAGGACCCCAAGCGTCTTTTCGAAGGTAACGCTTTGATTCGCCGTCTGGT
CCGCATCGGTGTCCTCGATGAGTCCCGCATGAAGCTCGATTACGTCCTGG
CCCTCCGCGTTGAGGACTTCTTGGAGCGTCGTCTTCAGACTTGCGTCTAC
AAGCTCGGCCTTGCCAAGTCCATCCACCACGCCCGTGTCCTGATCAAGCA
GCGTCACATCCGTGACTCGGAACTGAAGATTGTCGGCGAGTACGGCCTGC
GCAACAAGCGTGAGGTGTGGCGTGTCCAGCTCACCCTGTCCAAGATTCGT
CGTGCTGCTCGCTTTCGAGTCGGCCCGTCTCCGCGTTTACTCCAAGACCT
ACAAGGTCCCCCGTCGTCATGGCCCCCGTCCCTGTCGGCAAGCAGATCGT
CAACGTCCCCTCCTACATGGTCCGCCTGGACTCCCAGAAGCACATCGACT
TCGCCCTCACCTCCCCCTACGGTGGTGGCCGCCCTGGCCGTGTCCAGCGC
AAGAAGGCTGCCGCTGCTGCCGGTGGTGGTGACGACGAGGCTGAGGAGGA
TGAGGAGTAATGAGCTTCTCACCCTCGACGAGAAGGACCCCAAGCGTCTT
TTCGAAGGTAACGCTTTGATTCGCCGTCTGGTCCGCATCGGTGTCCTCGA
TGAGTCCCGCATGAAGCTCGATTACGTCCTGGCCCTCCGCGTTGAGGACT
TCTTGGAGCGTCGTCTTCAGACTTGCGTCTACAAGCTCGGCCTTGCCAAG
TCCATCCACCACGCCCGTGTCCTGATCAAGCAGCGTCACATCCGTGACTC
GGAACTGAAGATTGTCGGCGAGTACGGCCTGCGCAACAAGCGTGAGGTGT
GGCGTGTCCAGCTCACCCTGTCCAAGATTCGTCGTGCTGCTCGCTTTCGA
GTCGGCCCGTCTCCGCGTTTACTCCAAGACCTACAAGGTCCCCCGTCGTC
ATGGCCCCCGTCCCTGTCGGCAAGCAGATCGTCAACGTCCCCTCCTACAT
GGTCCGCCTGGACTCCCAGAAGCACATCGACTTCGCCCTCACCTCCCCCT
ACGGTGGTGGCCGCCCTGGCCGTGTCCAGCGCAAGAAGGCTGCCGCTGCT
GCCGGTGGTGGTGACGACGAGGCTGAGGAGGATGAGGAGTAATGAGCTTC
TCACCCTCGACGAGAAGGACCCCAAGCGTCTTTTCGAAGGTAACGCTTTG
ATTCGCCGTCTGGTCCGCATCGGTGTCCTCGATGAGTCCCGCATGAAGCT
CGATTACGTCCTGGCCCTCCGCGTTGAGGACTTCTTGGAGCGTCGTCTTC
AGACTTGCGTCTACAAGCTCGGCCTTGCCAAGTCCATCCACCACGCCCGT
GTCCTGATCAAGCAGCGTCACATCCGTGACTCGGAACTGAAGATTGTCGG
CGAGTACGGCCTGCGCAACAAGCGTGAGGTGTGGCGTGTCCAGCTCACCC
TGTCCAAGATTCGTCGTGCTGCTCGCTTTCGAGTCGGCCCGTCTCCGCGT
TTACTCCAAGACCTACAAGGTCCCCCGTCGTCATGGCCCCCGTCCCTGTC
GGCAAGCAGATCGTCAACGTCCCCTCCTACATGGTCCGCCTGGACTCCCA
GAAGCACATCGACTTCGCCCTCACCTCCCCCTACGGTGGTGGCCGCCCTG
GCCGTGTCCAGCGCAAGAAGGCTGCCGCTGCTGCCGGTGGTGGTGACGAC
GAGGCTGAGGAGGATGAGGAGTAATGAGCTTCTCACCCTCGACGAGAAGG
ACCCCAAGCGTCTTTTCGAAGGTAACGCTTTGATTCGCCGTCTGGTCCGC
ATCGGTGTCCTCGATGAGTCCCGCATGAAGCTCGATTACGTCCTGGCCCT
CCGCGTTGAGGACTTCTTGGAGCGTCGTCTTCAGACTTGCGTCTACAAGC
TCGGCCTTGCCAAGTCCATCCACCACGCCCGTGTCCTGATCAAGCAGCGT
CACATCCGTGACTCGGAACTGAAGATTGTCGGCGAGTACGGCCTGCGCAA
CAAGCGTGAGGTGTGGCGTGTCCAGCTCACCCTGTCCAAGATTCGTCGTG
CTGCTCGCTTTCGAGTCGGCCCGTCTCCGCGTTTACTCCAAGACCTACAA
GGTCCCCCGTCGTCATGGCCCCCGTCCCTGTCGGCAAGCAGATCGTCAAC
GTCCCCTCCTACATGGTCCGCCTGGACTCCCAGAAGCACATCGACTTCGC
CCTCACCTCCCCCTACGGTGGTGGCCGCCCTGGCCGTGTCCAGCGCAAGA
AGGCTGCCGCTGCTGCCGGTGGTGGTGACGACGAGGCTGAGGAGGATGAG
GAGTAATGAGCTTCTCACCCTCGACGAGAAGGACCCCAAGCGTCTTTTCG
AAGGTAACGCTTTGATTCGCCGTCTGGTCCGCATCGGTGTCCTCGATGAG
TCCCGCATGAAGCTCGATTACGTCCTGGCCCTCCGCGTTGAGGACTTCTT
GGAGCGTCGTCTTCAGACTTGCGTCTACAAGCTCGGCCTTGCCAAGTCCA
TCCACCACGCCCGTGTCCTGATCAAGCAGCGTCACATCCGTGACTCGGAA
CTGAAGATTGTCGGCGAGTACGGCCTGCGCAACAAGCGTGAGGTGTGGCG
TGTCCAGCTCACCCTGTCCAAGATTCGTCGTGCTGCTCGCTTTCGAGTCG
GCCCGTCTCCGCGTTTACTCCAAGACCTACAAGGTCCCCCGTCGTCATGG
CCCCCGTCCCTGTCGGCAAGCAGATCGTCAACGTCCCCTCCTACATGGTC
CGCCTGGACTCCCAGAAGCACATCGACTTCGCCCTCACCTCCCCCTACGG
TGGTGGCCGCCCTGGCCGTGTCCAGCGCAAGAAGGCTGCCGCTGCTGCCG
GTGGTGGTGACGACGAGGCTGAGGAGGATGAGGAGTAATGAGCTTCTCAC
CCTCGACGAGAAGGACCCCAAGCGTCTTTTCGAAGGTAACGCTTTGATTC
GCCGTCTGGTCCGCATCGGTGTCCTCGATGAGTCCCGCATGAAGCTCGAT
TACGTCCTGGCCCTCCGCGTTGAGGACTTCTTGGAGCGTCGTCTTCAGAC
TTGCGTCTACAAGCTCGGCCTTGCCAAGTCCATCCACCACGCCCGTGTCC
TGATCAAGCAGCGTCACATCCGTGACTCGGAACTGAAGATTGTCGGCGAG
TACGGCCTGCGCAACAAGCGTGAGGTGTGGCGTGTCCAGCTCACCCTGTC
CAAGATTCGTCGTGCTGCTCGCTTTCGAGTCGGCCCGTCTCCGCGTTTAC
TCCAAGACCTACAAGGTCCCCCGTCGTCATGGCCCCCGTCCC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0019843rRNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS9CBS51388_002318Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002318-T1CBS51388_002318-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002318-T1.cdsCBS51388_002318-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002318-T1.exon6CBS51388_002318-T1.exon6Aspergillus niger CBS 513.88exon
CBS51388_002318-T1.exon5CBS51388_002318-T1.exon5Aspergillus niger CBS 513.88exon
CBS51388_002318-T1.exon4CBS51388_002318-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_002318-T1.exon3CBS51388_002318-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002318-T1.exon2CBS51388_002318-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002318-T1.exon1CBS51388_002318-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR018079
DBxrefInterPro:IPR005710
DBxrefInterPro:IPR036986
DBxrefInterPro:IPR002942
DBxrefInterPro:IPR001912
DBxrefPFAM:PF01479
DBxrefPFAM:PF00163
Product40S ribosomal protein S9
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:3342005..3342949 -
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