You are here

Home

CBS51388_002475-T1, CBS51388_002475-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002475-T1
Unique NameCBS51388_002475-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An03:171299..172519+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002475-T1 ID=CBS51388_002475-T1|Name=CBS51388_002475-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1221bp|location=Sequence derived from alignment at An03:171299..172519+ (Aspergillus niger CBS 513.88)
ATGCTCGGATTTCCAATGTTCAGCCCAGAGACACCTGACGCCTGGAAGAT
GAATACCCCCTACTTTCCTTTTGTTTCCTCGGGTGTCTTCTCTGCATCGA
TACCATCATCACCCACCAATATAGAAGCTGCGAGTACTTCACAGTCTGAA
ACAAGCTTTCTGGACAAGGAAAAGGTCTGAAGCTTCCTGTCCATGGTCAG
TCTTCGTCTGATGTGAGATAACAGATTGTTCGAGGACCACTTGACTACCT
TCTTAAATCACCTGGGAAGGATATTCGTCGCAAATTCATCCACGCATTCA
ACGAGTGGCTGCGCATCCCAGAAGAGAAATTGAATATCATTACAGAGATT
GTTGGATTGCTCCACACAGCTTCCCTACTGTATATTCCTTTTCATTTCCC
ACATGATCGAAGTTCTTAATGTCTCGGAAACTAGCTGATCTTTTGAAGAA
TCGATGACATTCAGGACAATTCCAAACTTCGACGCGGCCTCCCAGTGGCC
CACAGCATCTTCGGCATTGCCCAGACCATCAACTCTGCTAATTATGCGTA
CTTTTTGGCGCAGGAGCGGCTCCGCGAACTGAATCATCCCGAAGCGTACG
AAATATACACCGAAGAACTGCTCCGTCTGCACCGCGGTCAAGGTATGGAC
TTGTACTGGCGGGATTCTCTGACCTGTCCCACAGAGGAGGACTATATCGA
GATGATCGCAAATAAGACGGGTGGCCTTTTCCGACTGGCTATCAAGCTTA
TGCAGTTGGAAACTGAAACAAAAAGGCAAGTGTTACATATCTGTCACAAT
ACTGTAAAGCTCCTTGTCACACAGCAGACTGACTCTATGCAGCTATGTCA
TCGAGCTAGCAGATTTGTTGGGGGTGATCTTTCAGATTCGAGATGATTAC
CAAAATTTGCAGAGCGGACTATACACGAAGAACAAGGGATTCTGTGAGGA
TTTGACGGAGGGCAAATTTTCCTTCCTGATCATCCACAGTATCCACAGTA
ACCCGAATAATCATCATCTGCTGAATATATTGCGGCAACGGAGCGAAGAC
GATTCGGTGAAGAAGTATGCTGTGGAGTATATCGACTCGACAGGGAGTTT
CGAATATTGTCGGGAACGGCTCGCTTCCTTGTTGGAAGAGGCGGATCATA
TGGTCAAAGAGCTAGAGAGTCAGGTTGGACATTCGAAGGGGATCTACGAA
ATATTGAGCTTTTTGTCGTAA
back to top

Coding sequence (CDS) from alignment at An03:171299..172519+

>CBS51388_002475-T1 ID=CBS51388_002475-T1|Name=CBS51388_002475-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4056bp|location=Sequence derived from alignment at An03:171299..172519+ (Aspergillus niger CBS 513.88)
ATGCTCGGATTTCCAATGTTCAGCCCAGAGACACCTGACGCCTGGAAGAT
GAATACCCCCTACTTTCCTTTTGTTTCCTCGGGTGTCTTCTCTGCATCGA
TACCATCATCACCCACCAATATAGAAGCTGCGAGTACTTCACAGTCTGAA
ACAAGCTTTCTGGACAAGGAAAAGATTGTTCGAGGACCACTTGACTACCT
TCTTAAATCACCTGGGAAGGATATTCGTCGCAAATTCATCCACGCATTCA
ACGAGTGGCTGCGCATCCCAGAAGAGAAATTGAATATCATTACAGAGATT
GTTGGATTGCTCCACACAGCTTCCCTACTAATCGATGACATTCAGGACAA
TTCCAAACTTCGACGCGGCCTCCCAGTGGCCCACAGCATCTTCGGCATTG
CCCAGACCATCAACTCTGCTAATTATGCGTACTTTTTGGCGCAGGAGCGG
CTCCGCGAACTGAATCATCCCGAAGCGTACGAAATATACACCGAAGAACT
GCTCCGTCTGCACCGCGGTCAAGGTATGGACTTGTACTGGCGGGATTCTC
TGACCTGTCCCACAGAGGAGGACTATATCGAGATGATCGCAAATAAGACG
GGTGGCCTTTTCCGACTGGCTATCAAGCTTATGCACTATGTCATCGAGCT
AGCAGATTTGTTGGGGGTGATCTTTCAGATTCGAGATGATTACCAAAATT
TGCAGAGCGGACTATACACGAAGAACAAGGGATTCTGTGAGGATTTGACG
GAGGGCAAATTTTCCTTCCTGATCATCCACAGTATCCACAGTAACCCGAA
TAATCATCATCTGCTGAATATATTGCGGCAACGGAGCGAAGACGATTCGG
TGAAGAAGTATGCTGTGGAGTATATCGACTCGACAGGGAGTTTCGAATAT
TGTCGGGAACGGCTCGCTTCCTTGTTGGAAGAGGCGGATCATATGGTCAA
AGAGCTAGAGAGTCAGGTTGGACATTCGAAGGGGATCTACGAAATATTGA
GCTTTTTGTCGTAAATGCTCGGATTTCCAATGTTCAGCCCAGAGACACCT
GACGCCTGGAAGATGAATACCCCCTACTTTCCTTTTGTTTCCTCGGGTGT
CTTCTCTGCATCGATACCATCATCACCCACCAATATAGAAGCTGCGAGTA
CTTCACAGTCTGAAACAAGCTTTCTGGACAAGGAAAAGATTGTTCGAGGA
CCACTTGACTACCTTCTTAAATCACCTGGGAAGGATATTCGTCGCAAATT
CATCCACGCATTCAACGAGTGGCTGCGCATCCCAGAAGAGAAATTGAATA
TCATTACAGAGATTGTTGGATTGCTCCACACAGCTTCCCTACTAATCGAT
GACATTCAGGACAATTCCAAACTTCGACGCGGCCTCCCAGTGGCCCACAG
CATCTTCGGCATTGCCCAGACCATCAACTCTGCTAATTATGCGTACTTTT
TGGCGCAGGAGCGGCTCCGCGAACTGAATCATCCCGAAGCGTACGAAATA
TACACCGAAGAACTGCTCCGTCTGCACCGCGGTCAAGGTATGGACTTGTA
CTGGCGGGATTCTCTGACCTGTCCCACAGAGGAGGACTATATCGAGATGA
TCGCAAATAAGACGGGTGGCCTTTTCCGACTGGCTATCAAGCTTATGCAC
TATGTCATCGAGCTAGCAGATTTGTTGGGGGTGATCTTTCAGATTCGAGA
TGATTACCAAAATTTGCAGAGCGGACTATACACGAAGAACAAGGGATTCT
GTGAGGATTTGACGGAGGGCAAATTTTCCTTCCTGATCATCCACAGTATC
CACAGTAACCCGAATAATCATCATCTGCTGAATATATTGCGGCAACGGAG
CGAAGACGATTCGGTGAAGAAGTATGCTGTGGAGTATATCGACTCGACAG
GGAGTTTCGAATATTGTCGGGAACGGCTCGCTTCCTTGTTGGAAGAGGCG
GATCATATGGTCAAAGAGCTAGAGAGTCAGGTTGGACATTCGAAGGGGAT
CTACGAAATATTGAGCTTTTTGTCGTAAATGCTCGGATTTCCAATGTTCA
GCCCAGAGACACCTGACGCCTGGAAGATGAATACCCCCTACTTTCCTTTT
GTTTCCTCGGGTGTCTTCTCTGCATCGATACCATCATCACCCACCAATAT
AGAAGCTGCGAGTACTTCACAGTCTGAAACAAGCTTTCTGGACAAGGAAA
AGATTGTTCGAGGACCACTTGACTACCTTCTTAAATCACCTGGGAAGGAT
ATTCGTCGCAAATTCATCCACGCATTCAACGAGTGGCTGCGCATCCCAGA
AGAGAAATTGAATATCATTACAGAGATTGTTGGATTGCTCCACACAGCTT
CCCTACTAATCGATGACATTCAGGACAATTCCAAACTTCGACGCGGCCTC
CCAGTGGCCCACAGCATCTTCGGCATTGCCCAGACCATCAACTCTGCTAA
TTATGCGTACTTTTTGGCGCAGGAGCGGCTCCGCGAACTGAATCATCCCG
AAGCGTACGAAATATACACCGAAGAACTGCTCCGTCTGCACCGCGGTCAA
GGTATGGACTTGTACTGGCGGGATTCTCTGACCTGTCCCACAGAGGAGGA
CTATATCGAGATGATCGCAAATAAGACGGGTGGCCTTTTCCGACTGGCTA
TCAAGCTTATGCACTATGTCATCGAGCTAGCAGATTTGTTGGGGGTGATC
TTTCAGATTCGAGATGATTACCAAAATTTGCAGAGCGGACTATACACGAA
GAACAAGGGATTCTGTGAGGATTTGACGGAGGGCAAATTTTCCTTCCTGA
TCATCCACAGTATCCACAGTAACCCGAATAATCATCATCTGCTGAATATA
TTGCGGCAACGGAGCGAAGACGATTCGGTGAAGAAGTATGCTGTGGAGTA
TATCGACTCGACAGGGAGTTTCGAATATTGTCGGGAACGGCTCGCTTCCT
TGTTGGAAGAGGCGGATCATATGGTCAAAGAGCTAGAGAGTCAGGTTGGA
CATTCGAAGGGGATCTACGAAATATTGAGCTTTTTGTCGTAAATGCTCGG
ATTTCCAATGTTCAGCCCAGAGACACCTGACGCCTGGAAGATGAATACCC
CCTACTTTCCTTTTGTTTCCTCGGGTGTCTTCTCTGCATCGATACCATCA
TCACCCACCAATATAGAAGCTGCGAGTACTTCACAGTCTGAAACAAGCTT
TCTGGACAAGGAAAAGATTGTTCGAGGACCACTTGACTACCTTCTTAAAT
CACCTGGGAAGGATATTCGTCGCAAATTCATCCACGCATTCAACGAGTGG
CTGCGCATCCCAGAAGAGAAATTGAATATCATTACAGAGATTGTTGGATT
GCTCCACACAGCTTCCCTACTAATCGATGACATTCAGGACAATTCCAAAC
TTCGACGCGGCCTCCCAGTGGCCCACAGCATCTTCGGCATTGCCCAGACC
ATCAACTCTGCTAATTATGCGTACTTTTTGGCGCAGGAGCGGCTCCGCGA
ACTGAATCATCCCGAAGCGTACGAAATATACACCGAAGAACTGCTCCGTC
TGCACCGCGGTCAAGGTATGGACTTGTACTGGCGGGATTCTCTGACCTGT
CCCACAGAGGAGGACTATATCGAGATGATCGCAAATAAGACGGGTGGCCT
TTTCCGACTGGCTATCAAGCTTATGCACTATGTCATCGAGCTAGCAGATT
TGTTGGGGGTGATCTTTCAGATTCGAGATGATTACCAAAATTTGCAGAGC
GGACTATACACGAAGAACAAGGGATTCTGTGAGGATTTGACGGAGGGCAA
ATTTTCCTTCCTGATCATCCACAGTATCCACAGTAACCCGAATAATCATC
ATCTGCTGAATATATTGCGGCAACGGAGCGAAGACGATTCGGTGAAGAAG
TATGCTGTGGAGTATATCGACTCGACAGGGAGTTTCGAATATTGTCGGGA
ACGGCTCGCTTCCTTGTTGGAAGAGGCGGATCATATGGTCAAAGAGCTAG
AGAGTCAGGTTGGACATTCGAAGGGGATCTACGAAATATTGAGCTTTTTG
TCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002475CBS51388_002475Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002475-T1.exon1CBS51388_002475-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_002475-T1.exon2CBS51388_002475-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002475-T1.exon3CBS51388_002475-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002475-T1.exon4CBS51388_002475-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002475-T1.cdsCBS51388_002475-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002475-T1CBS51388_002475-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_3.3
NoteSMCOG1182:Polyprenyl synthetase
DBxrefInterPro:IPR033749
DBxrefInterPro:IPR000092
DBxrefInterPro:IPR008949
DBxrefPFAM:PF00348
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An03supercontigAn03:171299..172519 +
Powered by Drupal