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CBS51388_002746-T1, CBS51388_002746-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002746-T1
Unique NameCBS51388_002746-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An03:1015417..1016473-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002746-T1 ID=CBS51388_002746-T1|Name=CBS51388_002746-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1057bp|location=Sequence derived from alignment at An03:1015417..1016473- (Aspergillus niger CBS 513.88)
ATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGC
AAGCACGTCCATCTCCATTGTATGTCTTCAATTCGTCCTCGTGCGGTGGT
TAGGATCCGCTGCTAATCACCTTTTCTTCGTTTAGTTGGCTTGGTTGATC
GCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTA
TTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGC
TTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGGTATGTTAC
CATCCCTCCTGAATCAATCTTTTGACAACCCTTCGTACTGATTTATGGCA
GATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCATCA
ACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGG
TTCATTCTTTTGGCTATGGTTATTGTAAGTGATAACCAGCTCCGACACAC
ATACCCACTAGGCAGTACGTGACTTACCATTAATGCAGATCATTTGGATT
TTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTC
ATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTA
TGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCG
CAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGT
GTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGC
AGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCA
CCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGAT
CTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCA
AGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCC
AGGAAGGCCACCGGAGAGACAGGTATTGCTCCATCCAACTACCTGATCTT
GCTGTGA
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Coding sequence (CDS) from alignment at An03:1015417..1016473-

>CBS51388_002746-T1 ID=CBS51388_002746-T1|Name=CBS51388_002746-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3468bp|location=Sequence derived from alignment at An03:1015417..1016473- (Aspergillus niger CBS 513.88)
ATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGG
CTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAA
ATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATCC
AGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGAC
CTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACC
GCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCC
AACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCG
TGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGA
TCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGA
TGGTGGCAGGCCAGGAAGGCCACCGGAGAGACAGGTATTGCTCCATCCAA
CTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTA
TCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATCG
CAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTTG
GTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATC
CCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGC
ATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGAT
GGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCAA
GCACGTCCATCTCCATTATCATTTGGATTTTCTACTTCGGATCTAGCCCT
CAGGCTTCGCATCGCGGCTTCATCGATTCATTTGCCCTCCAGAAGGAAGG
TGCTGGCTCGTACGGAAATGGCAGACCTATGTCAACTGCATTCGGCAATC
GACCCGAGACGACATCCAGCCAGCCCCCGCAGATGTACACGTCCGCTCAA
CTCAACGGCTTCGAGACCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGC
CCCCGGCTCCGAACACCGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGT
CCGCTACGAATCTGCCCAACAATGGCGCACCAGATGAAGTCCCCCAGCCC
ACGGAATATCCGTACCGTGCGAAGGCGATCTATTCGTATGAGGCCAACCC
TGAAGATGCCAATGAGATCAGTTTCACCAAGCATGAGATCTTGGAGGTGT
CCGATGTGAGCGGTAGATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACA
GGTATTGCTCCATCCAACTACCTGATCTTGCTGTGAATCGTGGGGTATCT
TTCCGCTGGTCTTGTTATCACAACAATCTCCATCAACACGTTAGTCTATG
CAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCT
ATGGTTATTTTGGCTTGGTTGATCGCATTTATCTCCTCCATTGTCACTGG
CGTACATGGCGGATATCCCACCTATTCATGGTGGGCTGTTGCTTACTCAT
TTTGCTGCATTGTCGGCATGGCGCTTGTCTTCGGCACCGATACTGGTGCC
GTCTATAACATAGCGATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGA
CCCCTTTGCGCTCGCAAGCACGTCCATCTCCATTATCATTTGGATTTTCT
ACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTCATTT
GCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTATGTC
AACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCGCAGA
TGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGTGTCG
GGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGCAGCC
CCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCACCAG
ATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGATCTAT
TCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCAAGCA
TGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCCAGGA
AGGCCACCGGAGAGACAGGTATTGCTCCATCCAACTACCTGATCTTGCTG
TGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCAT
CAACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTG
GGTTCATTCTTTTGGCTATGGTTATTTTGGCTTGGTTGATCGCATTTATC
TCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTATTCATGGTG
GGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGCTTGTCTTCG
GCACCGATACTGGTGCCGTCTATAACATAGCGATGGCGCGCTTCAGAGCC
AGCAATATTCTGGGCGACCCCTTTGCGCTCGCAAGCACGTCCATCTCCAT
TATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCG
GCTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGA
AATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATC
CAGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGA
CCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACAC
CGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCC
CAACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACC
GTGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAG
ATCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAG
ATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACAGGTATTGCTCCATCCA
ACTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTT
ATCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATC
GCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTT
GGTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATAT
CCCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGG
CATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGA
TGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCA
AGCACGTCCATCTCCATT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHO1CBS51388_002746Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002746-T1CBS51388_002746-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002746-T1.cdsCBS51388_002746-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002746-T1.exon4CBS51388_002746-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_002746-T1.exon3CBS51388_002746-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002746-T1.exon2CBS51388_002746-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002746-T1.exon1CBS51388_002746-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR036028
DBxrefInterPro:IPR035522
DBxrefInterPro:IPR001452
DBxrefPFAM:PF07653
DBxrefPFAM:PF00018
ProductTransmembrane osmosensor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An03supercontigAn03:1015417..1016473 -
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