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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:143180..143985+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003000-T1 ID=CBS51388_003000-T1|Name=CBS51388_003000-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=806bp|location=Sequence derived from alignment at An04:143180..143985+ (Aspergillus niger CBS 513.88)
ATGTTGTCGCTCCTGTGGTCGGTTTTTCTTGTCCATGTAGCCATTTATTT
GGTTAATACCATTGGCGCTAGCACGATTGATAATCTGGTACGTTCTGTCT
GGAAGCTTGCTGGGTGGCGGCCTTGTAGCTGTCATGTCTTAAGCTATTCT
CTCGCACACCAAATGTCAGAGTGTAAGGTAAAGCTAACAAGTATAATCTA
GCTATGGCTCCTCTACCTAAAAGTCCCGACCTCCACGTCGAAGAAATACA
AAGAACAAAACCGACTCAAACGCGAGGTTGTCCAGCTGAAGCGGGACATG
AACAACACCAGCTCACAGGATGAGTTTGCGAAATGGGCGAAACTCCGACG
GAAACATGATAAGACCATGGAGGAATATGAGGCGATAAGTACGTTCGATT
CCAATCGCAGTTACAGTCTATAAATATGGACTTCGGAGGTTGGGGAGAAT
AGCTGGTTGAAGTGAGAGCTAACAAAAGCGGTTCAACAGACAAACAACTC
GTTTCGCAGAAAACCTCTTTCGACTGGGGCGTCAAAATCGTTCGCTGGTT
CGGTACATCTGGTCTCAAGTTCTTCCTGCAATTCTGGTACTCGAAAACGC
CTGTCTTCCATCTGCCAGAGGGTTGGCTTCCTTACTACGTGGCGTGGCTG
CTGTCGTTCCCCCGTGCGCCCATGGGGTCGGTGAGCATCCAGATTTGGAG
TAATGTTTGTGCGACGGCGATTACGACTATGGCGGAGGTGGTGACGGCTG
TTCTGTTGCAGAGGGCTACTGCTGCTGCTGCGCCTGCTGCGAAGAAGACA
CAATGA back to topCoding sequence (CDS) from alignment at An04:143180..143985+ >CBS51388_003000-T1 ID=CBS51388_003000-T1|Name=CBS51388_003000-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1773bp|location=Sequence derived from alignment at An04:143180..143985+ (Aspergillus niger CBS 513.88)
ATGTTGTCGCTCCTGTGGTCGGTTTTTCTTGTCCATGTAGCCATTTATTT
GGTTAATACCATTGGCGCTAGCACGATTGATAATCTGCTATGGCTCCTCT
ACCTAAAAGTCCCGACCTCCACGTCGAAGAAATACAAAGAACAAAACCGA
CTCAAACGCGAGGTTGTCCAGCTGAAGCGGGACATGAACAACACCAGCTC
ACAGGATGAGTTTGCGAAATGGGCGAAACTCCGACGGAAACATGATAAGA
CCATGGAGGAATATGAGGCGATAAACAAACAACTCGTTTCGCAGAAAACC
TCTTTCGACTGGGGCGTCAAAATCGTTCGCTGGTTCGGTACATCTGGTCT
CAAGTTCTTCCTGCAATTCTGGTACTCGAAAACGCCTGTCTTCCATCTGC
CAGAGGGTTGGCTTCCTTACTACGTGGCGTGGCTGCTGTCGTTCCCCCGT
GCGCCCATGGGGTCGGTGAGCATCCAGATTTGGAGTAATGTTTGTGCGAC
GGCGATTACGACTATGGCGGAGGTGGTGACGGCTGTTCTGTTGCAGAGGG
CTACTGCTGCTGCTGCGCCTGCTGCGAAGAAGACACAATGAATGTTGTCG
CTCCTGTGGTCGGTTTTTCTTGTCCATGTAGCCATTTATTTGGTTAATAC
CATTGGCGCTAGCACGATTGATAATCTGCTATGGCTCCTCTACCTAAAAG
TCCCGACCTCCACGTCGAAGAAATACAAAGAACAAAACCGACTCAAACGC
GAGGTTGTCCAGCTGAAGCGGGACATGAACAACACCAGCTCACAGGATGA
GTTTGCGAAATGGGCGAAACTCCGACGGAAACATGATAAGACCATGGAGG
AATATGAGGCGATAAACAAACAACTCGTTTCGCAGAAAACCTCTTTCGAC
TGGGGCGTCAAAATCGTTCGCTGGTTCGGTACATCTGGTCTCAAGTTCTT
CCTGCAATTCTGGTACTCGAAAACGCCTGTCTTCCATCTGCCAGAGGGTT
GGCTTCCTTACTACGTGGCGTGGCTGCTGTCGTTCCCCCGTGCGCCCATG
GGGTCGGTGAGCATCCAGATTTGGAGTAATGTTTGTGCGACGGCGATTAC
GACTATGGCGGAGGTGGTGACGGCTGTTCTGTTGCAGAGGGCTACTGCTG
CTGCTGCGCCTGCTGCGAAGAAGACACAATGAATGTTGTCGCTCCTGTGG
TCGGTTTTTCTTGTCCATGTAGCCATTTATTTGGTTAATACCATTGGCGC
TAGCACGATTGATAATCTGCTATGGCTCCTCTACCTAAAAGTCCCGACCT
CCACGTCGAAGAAATACAAAGAACAAAACCGACTCAAACGCGAGGTTGTC
CAGCTGAAGCGGGACATGAACAACACCAGCTCACAGGATGAGTTTGCGAA
ATGGGCGAAACTCCGACGGAAACATGATAAGACCATGGAGGAATATGAGG
CGATAAACAAACAACTCGTTTCGCAGAAAACCTCTTTCGACTGGGGCGTC
AAAATCGTTCGCTGGTTCGGTACATCTGGTCTCAAGTTCTTCCTGCAATT
CTGGTACTCGAAAACGCCTGTCTTCCATCTGCCAGAGGGTTGGCTTCCTT
ACTACGTGGCGTGGCTGCTGTCGTTCCCCCGTGCGCCCATGGGGTCGGTG
AGCATCCAGATTTGGAGTAATGTTTGTGCGACGGCGATTACGACTATGGC
GGAGGTGGTGACGGCTGTTCTGTTGCAGAGGGCTACTGCTGCTGCTGCGC
CTGCTGCGAAGAAGACACAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0043529 | GET complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071816 | tail-anchored membrane protein insertion into ER membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027538 |
| DBxref | InterPro:IPR029012 |
| DBxref | InterPro:IPR028945 |
| DBxref | PFAM:PF04420 |
| Product | GET complex subunit get1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:143180..143985 + |
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