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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:388537..389437+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003069-T1 ID=CBS51388_003069-T1|Name=CBS51388_003069-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=901bp|location=Sequence derived from alignment at An04:388537..389437+ (Aspergillus niger CBS 513.88)
ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCG
TCGCTCCGACGATCCCCAGTATCGCGATGACCCCGAATTCCATCGTTTGA
CCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG
TTGTCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGT
GCGCGAGAGAGTCCACAAGCTCCTGGAGGATACTCGGGGGGGTTTCAGGG
ATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGTGTA
TGTTACGCCCATATATAACCCCCCACCCCCAACTGCGCTGCGACCGAACA
AGCAATACTAATGTATTTCTCACTAGCCTTCCCAAAAATGGACTCAGCAG
AAGCTCTCGTCCGAATTCAAATCTACCCTAGAAGAGTTCCAGACTGTTCA
GCGTCGTGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCCGCTCGGACTG
CCGTAGACGAAGCGGAGCCTGGTTCCGGAGGTGACCATCAGCCGCAGCAA
CAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGA
AGTGGACTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCA
ACATTGAGCAGAGCGTTGGCGAACTCAATGAACTGTTCCGGGACGTGGCT
CACATTGTCCATGAGCAAGGTGGACAGCTTGACATTATCAGCGAGAATGT
TGAACGAGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCG
CCAGCCGGTACCAGAAGAATGCGCGCAACAAGGCTTGCTGTCTGCTTGTC
ATTCTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATA
G back to topCoding sequence (CDS) from alignment at An04:388537..389437+ >CBS51388_003069-T1 ID=CBS51388_003069-T1|Name=CBS51388_003069-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1644bp|location=Sequence derived from alignment at An04:388537..389437+ (Aspergillus niger CBS 513.88)
ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCG
TCGCTCCGACGATCCCCAGTATCGCGATGACCCCGAATTCCATCGTTTGA
CCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG
TTGTCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGT
GCGCGAGAGAGTCCACAAGCTCCTGGAGGATACTCGGGGGGGTTTCAGGG
ATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGTCCT
TCCCAAAAATGGACTCAGCAGAAGCTCTCGTCCGAATTCAAATCTACCCT
AGAAGAGTTCCAGACTGTTCAGCGTCGTGCCTTGGAGAAGCAACGGGCAT
CCGCAGCAGCCGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGA
GGTGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCC
CCGCCTTGCGAATCAGGACGAAGTGGACTTCCAGGAGGCCCTCATTATCG
AGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAAT
GAACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCT
TGACATTATCAGCGAGAATGTTGAACGAGTTGGCGATGACACTCGTGGAG
CAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAAC
AAGGCTTGCTGTCTGCTTGTCATTCTTGCTGTTATCCTTACCATCATCGT
CCTGGCGGCAACCCTGGGATAGATGTCGTTTGATCGCTTGAACTCGCTAG
AGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGCGAT
GACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTAC
CCTGACCTCCAACATCACTCGGTTGTCCGATCAGATTGCCCTTCTGGGAA
CGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTGGAG
GATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCA
GACATGGGAGGATGTCAGTCCTTCCCAAAAATGGACTCAGCAGAAGCTCT
CGTCCGAATTCAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGTCGT
GCCTTGGAGAAGCAACGGGCATCCGCAGCAGCCGCTCGGACTGCCGTAGA
CGAAGCGGAGCCTGGTTCCGGAGGTGACCATCAGCCGCAGCAACAGCAAG
ACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTGGAC
TTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGA
GCAGAGCGTTGGCGAACTCAATGAACTGTTCCGGGACGTGGCTCACATTG
TCCATGAGCAAGGTGGACAGCTTGACATTATCAGCGAGAATGTTGAACGA
GTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCG
GTACCAGAAGAATGCGCGCAACAAGGCTTGCTGTCTGCTTGTCATTCTTG
CTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005484 | SNAP receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016192 | vesicle-mediated transport |
| GO:0006886 | intracellular protein transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010989 |
| DBxref | InterPro:IPR006012 |
| DBxref | InterPro:IPR006011 |
| DBxref | InterPro:IPR000727 |
| DBxref | PFAM:PF14523 |
| DBxref | PFAM:PF05739 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:388537..389437 + |
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