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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:404151..405173+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003075-T1 ID=CBS51388_003075-T1|Name=CBS51388_003075-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1023bp|location=Sequence derived from alignment at An04:404151..405173+ (Aspergillus niger CBS 513.88)
ATGAACAGCTTGGTGGCTACACCACCTGTGCCTCCTCATCACTTTTACGA
ATACTCCCGTCCTTCTCCCTCCCGTCCAAGTAAGCATCTCCCTGTCTTTC
CCCAGTGCATTCGATGATGATTCCCTTGCTATGTGACCTTTGATGACCGA
CTGATATCAGTGTCTACCCCCGTTCACACTCCCAACAACCGCAAACGGAA
AGCCGACGATGAGAATGATCACGATGGTCGAATGTCAGCATCACCTACCA
ACTCTCCCGCCTTGACCCCGAGAACCCTTCCAGTCAACCGAAACATCAAG
CGTGCTCGTCCGAATGTTAGCGGACGGCCTCTCGCTCTCCCCCGACTGCT
GGAGACCTTGGACACAGACGCTCTTCGGGGCATCCTTCGGACCGTGTGTG
AGCGTCATCCAGGTTTGGTTGATGAAGTGGTGCACACAGCACCTCGACCC
AGCGTGGCATCTGCCCTTCAAGTCCTTCGACATTACGAATCTGCCCTTCA
GTCGTCGTTCCCGCTCGGTGGCAACTCCGAATCAGATTATGCATACAATC
GTGTCCGACAACCGCTGGGGAATCTTCTAGATGCTCTGAGCGACTTCACT
CCACATTTCCTACCACCTCACGAGACGCAGTCGTCTGTTTCCTTGAGTTA
CCTGGATGGTGCGACCGACATAATTCACGCACTGCCCCGTTGGAGTACAC
CACAGAACAACCTCGAGCGGGATTCTGCATACGATGAGATATGCAAGGCT
TGGATTTTGGTGATTCGGGAAGCAGCCAAGCGTGGTGGTGGAATTCAGTT
ACAATACGGTGGTTGGGATCAGAAGTTGGCGAAGCACAATCACAACTCGG
GCGGTAAACTGCAGGCAGCCGTCAACGAGCTTGGTTCCAGTTTGGGATGG
ATGCACAGACCGGATGCCCAAGGTTATGGAAGCCCAGGCGGCAATGACCT
TGGGTCCATCCGGGAGCAACTCCTGTCGGGCACATACGGGCTCGGTACCC
CCGTCAAGGTTGGGCCATGGTGA back to topCoding sequence (CDS) from alignment at An04:404151..405173+ >CBS51388_003075-T1 ID=CBS51388_003075-T1|Name=CBS51388_003075-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1884bp|location=Sequence derived from alignment at An04:404151..405173+ (Aspergillus niger CBS 513.88)
ATGAACAGCTTGGTGGCTACACCACCTGTGCCTCCTCATCACTTTTACGA
ATACTCCCGTCCTTCTCCCTCCCGTCCAATGTCTACCCCCGTTCACACTC
CCAACAACCGCAAACGGAAAGCCGACGATGAGAATGATCACGATGGTCGA
ATGTCAGCATCACCTACCAACTCTCCCGCCTTGACCCCGAGAACCCTTCC
AGTCAACCGAAACATCAAGCGTGCTCGTCCGAATGTTAGCGGACGGCCTC
TCGCTCTCCCCCGACTGCTGGAGACCTTGGACACAGACGCTCTTCGGGGC
ATCCTTCGGACCGTGTGTGAGCGTCATCCAGGTTTGGTTGATGAAGTGGT
GCACACAGCACCTCGACCCAGCGTGGCATCTGCCCTTCAAGTCCTTCGAC
ATTACGAATCTGCCCTTCAGTCGTCGTTCCCGCTCGGTGGCAACTCCGAA
TCAGATTATGCATACAATCGTGTCCGACAACCGCTGGGGAATCTTCTAGA
TGCTCTGAGCGACTTCACTCCACATTTCCTACCACCTCACGAGACGCAGT
CGTCTGTTTCCTTGAGTTACCTGGATGGTGCGACCGACATAATTCACGCA
CTGCCCCGTTGGAGTACACCACAGAACAACCTCGAGCGGGATTCTGCATA
CGATGAGATATGCAAGGCTTGGATTTTGGTGATTCGGGAAGCAGCCAAGC
GTGGTGGTGGAATTCAGTTACAATACGGTGGTTGGGATCAGAAGTTGGCG
AAGCACAATCACAACTCGGGCGGTAAACTGCAGGCAGCCGTCAACGAGCT
TGGTTCCAGTTTGGGATGGATGCACAGACCGGATGCCCAAGGTTATGGAA
GCCCAGGCGGCAATGACCTTGGGTCCATCCGGGAGCAACTCCTGTCGGGC
ACATACGGGCTCGGTACCCCCGTCAAGGTTGGGCCATGGTGAATGAACAG
CTTGGTGGCTACACCACCTGTGCCTCCTCATCACTTTTACGAATACTCCC
GTCCTTCTCCCTCCCGTCCAATGTCTACCCCCGTTCACACTCCCAACAAC
CGCAAACGGAAAGCCGACGATGAGAATGATCACGATGGTCGAATGTCAGC
ATCACCTACCAACTCTCCCGCCTTGACCCCGAGAACCCTTCCAGTCAACC
GAAACATCAAGCGTGCTCGTCCGAATGTTAGCGGACGGCCTCTCGCTCTC
CCCCGACTGCTGGAGACCTTGGACACAGACGCTCTTCGGGGCATCCTTCG
GACCGTGTGTGAGCGTCATCCAGGTTTGGTTGATGAAGTGGTGCACACAG
CACCTCGACCCAGCGTGGCATCTGCCCTTCAAGTCCTTCGACATTACGAA
TCTGCCCTTCAGTCGTCGTTCCCGCTCGGTGGCAACTCCGAATCAGATTA
TGCATACAATCGTGTCCGACAACCGCTGGGGAATCTTCTAGATGCTCTGA
GCGACTTCACTCCACATTTCCTACCACCTCACGAGACGCAGTCGTCTGTT
TCCTTGAGTTACCTGGATGGTGCGACCGACATAATTCACGCACTGCCCCG
TTGGAGTACACCACAGAACAACCTCGAGCGGGATTCTGCATACGATGAGA
TATGCAAGGCTTGGATTTTGGTGATTCGGGAAGCAGCCAAGCGTGGTGGT
GGAATTCAGTTACAATACGGTGGTTGGGATCAGAAGTTGGCGAAGCACAA
TCACAACTCGGGCGGTAAACTGCAGGCAGCCGTCAACGAGCTTGGTTCCA
GTTTGGGATGGATGCACAGACCGGATGCCCAAGGTTATGGAAGCCCAGGC
GGCAATGACCTTGGGTCCATCCGGGAGCAACTCCTGTCGGGCACATACGG
GCTCGGTACCCCCGTCAAGGTTGGGCCATGGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071630 | nuclear protein quality control by the ubiquitin-proteasome system |
| GO:0031144 | proteasome localization |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013868 |
| DBxref | InterPro:IPR038422 |
| DBxref | PFAM:PF08559 |
| Product | Tethering factor for nuclear proteasome sts1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:404151..405173 + |
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