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CBS51388_003116-T1, CBS51388_003116-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003116-T1
Unique NameCBS51388_003116-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:527064..528617+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003116-T1 ID=CBS51388_003116-T1|Name=CBS51388_003116-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1554bp|location=Sequence derived from alignment at An04:527064..528617+ (Aspergillus niger CBS 513.88)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGTACGAATGCATTT
TGGCAACTTACTGCTAGTCTGCTTTGTATACACTTGTGTGCTCACTGATT
TTTGTAATATTCTGTAGGATTGCGGAGATATGCACTTTCTACCCTGGTGA
ATAATCTCTTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATTAAT
GGCGCATTCCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCAT
ATCTGCGGAAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCC
CGCTCCATATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGAT
GTCCTCTCTGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTC
TCCAGGCCAGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTG
TGTGGAATATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCGGCTGAT
GGAGGGCACGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTC
GATTGTGTCGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATG
AAAGCGATGATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTAC
GGACACAAATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCG
TATTCTCTCCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGA
AGTCAGATGCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCTGCGTCA
CGGAGCTCCAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCG
TGGCCCGCTTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCA
TTTTTGACACAAACGACTCGACTGTCGGTTATTCTACTTCGTGGGATCAC
TCTCTGCGTACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATC
GACATCCCATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTC
TTGCGACAGGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACA
TCAGCGACAACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGT
GGTTTCGCTGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTA
GTCACGACGGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGAC
AATGACGGTGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTT
GGAAGAGCAAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCA
AGGTCTTCAGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGT
GAGGATAAGAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGC
ATAA
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Coding sequence (CDS) from alignment at An04:527064..528617+

>CBS51388_003116-T1 ID=CBS51388_003116-T1|Name=CBS51388_003116-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2946bp|location=Sequence derived from alignment at An04:527064..528617+ (Aspergillus niger CBS 513.88)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGATTGCGGAGATAT
GCACTTTCTACCCTGGTGAATAATCTCTTGGGAAACGACAAGCCGGTGCC
ATTTGAGTTTTTGATTAATGGCGCATTCCTTCGGACTTCGATCGATGAAT
ACTTGACGGCCAATGGCATATCTGCGGAAACCACTCTGGAAATTGAGTAC
ATAAGAGCGTTGATTCCCCCGCTCCATATTGCCTCCTTCGAGCATGATGA
CTGGGTTGGCTCTGTGGATGTCCTCTCTGCGACCTCGCTTGCTACCTCTT
GGGCTTCTGCGGTCGTCTCTCCAGGCCAGGAGAGAATCCTATCGGGAAGC
TATGACGGATTGCTTCGTGTGTGGAATATGTCCTCCCAGATCGTCGCAAC
CTCACCGTCCCCGGCTGATGGAGGGCACGGTGCGTCCATCAAAGCCGCTA
AGTTCATCTCGCCGAATTCGATTGTGTCGGCTGGCCTTGATCGCACCGTT
CGACTCTGGAAGTACAATGAAAGCGATGATGGATTCTCAGGAAAGATCAC
TCCGCAGATTGAGCTCTACGGACACAAATCTGGTATCAACTCGTTGGCTG
TGCATGCCCCCTCGAACCGTATTCTCTCCGCCTCGTCAGACCACAGCATT
GGCTTCTGGTCGACAAAGAAGTCAGATGCCCCAGCTGCCCCCGAGAACCT
AGTTCCATCTGCTGCGTCACGGAGCTCCAAGCGCAGAAAGGTGAGCTCGT
CCGTCAGCATCCCGCAGCGTGGCCCGCTTGCGCTGTTGTCTTCCCACACT
GCGCCAGTGTCAGCTGCCATTTTTGACACAAACGACTCGACTGTCGGTTA
TTCTACTTCGTGGGATCACTCTCTGCGTACATGGGATCTGGTCACGGCCG
CTTTAGTAGACACCAGATCGACATCCCATTCGTTGCTATCTCTCGAGCAT
CTCCCCGAGCACCACCTTCTTGCGACAGGAACTTCCGCTCGCCACATCAC
TCTCATCGATCCTCGTACATCAGCGACAACCATCTCCGCCATGACCCTCA
GAGGTCACACCAATGCCGTGGTTTCGCTGTCCCGCGATCCCCACAGCAGC
TACGGTCTCATCAGTGGTAGTCACGACGGTACATGTCGAATCTGGGATAT
CCGTGCTACGAAGACGGACAATGACGGTGTTGTTGGTGAGAGCGTGTATT
CGATTACTCGGAGAAGCTTGGAAGAGCAAGGTAAAGCGGATGCTAAGCGA
GTAGGTGGAGAGGGAGTCAAGGTCTTCAGTGTGTGCTGGGACCGCTCGGT
TGGCATTGTCAGCGCCGGTGAGGATAAGAGGATTCAGATCAACCGGGGTG
AAGGCGTCTTGTCTTCCGCATAAATGAACGGCGTTCAGGATTCAACCTCT
GCTGCGGCCTCGTCCCAGTCTGCGCAGAGGCAGGTGCGCGTGCAGCTCGT
TAGCAAGCAAGAAGACATTGCGCTGCCTGAGAGCACCGGCCCCATTCTGG
TTCCCACAGGATTGCGGAGATATGCACTTTCTACCCTGGTGAATAATCTC
TTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATTAATGGCGCATT
CCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCATATCTGCGG
AAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCCCGCTCCAT
ATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGATGTCCTCTC
TGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTCTCCAGGCC
AGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTGTGTGGAAT
ATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCGGCTGATGGAGGGCA
CGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTCGATTGTGT
CGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATGAAAGCGAT
GATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTACGGACACAA
ATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCGTATTCTCT
CCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGAAGTCAGAT
GCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCTGCGTCACGGAGCTC
CAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCGTGGCCCGC
TTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCATTTTTGAC
ACAAACGACTCGACTGTCGGTTATTCTACTTCGTGGGATCACTCTCTGCG
TACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATCGACATCCC
ATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTCTTGCGACA
GGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACATCAGCGAC
AACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGTGGTTTCGC
TGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTAGTCACGAC
GGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGACAATGACGG
TGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTTGGAAGAGC
AAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCAAGGTCTTC
AGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGTGAGGATAA
GAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGCATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YTM1CBS51388_003116Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003116-T1.exon1CBS51388_003116-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_003116-T1.exon2CBS51388_003116-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003116-T1.cdsCBS51388_003116-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003116-T1CBS51388_003116-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR028599
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR012972
DBxrefInterPro:IPR001680
DBxrefInterPro:IPR020472
DBxrefPFAM:PF00400
DBxrefPFAM:PF08154
Productribosome bioproteinsis protein ytm1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:527064..528617 +
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