You are here

Home

CBS51388_003408-T1, CBS51388_003408-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003408-T1
Unique NameCBS51388_003408-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:1410687..1411583-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003408-T1 ID=CBS51388_003408-T1|Name=CBS51388_003408-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=897bp|location=Sequence derived from alignment at An04:1410687..1411583- (Aspergillus niger CBS 513.88)
ATGTCGACCCTCGAAGAAAAGATCTCCCTCTTACACAACTACTCGGCCTG
CGATGTACATCCCCTTAACCATATTCAACCCATCAAACACTACTAACTCA
TGAAAACCAGGTCTCCGACGCCCTCCTCAAACTCCAATCCGTCCCTTCAA
ATACCCCACCCCGAGCAGGCTACATCGCAGACCTAAGTATATACACCCAT
CGTCAACCACCACCGCTACCAAATTACTAACAAACCCCATCTACTAAAAA
CAGCCCCCTACCCTCCAAACACCACCACACCCACCAAACTAATCGCCCCC
GCCAGCACCCTTCAATTCATCCCCAAATCCAACCCCACCCCCACCAGCAG
CAGCATCCCACCCTCCACGCACTGGTCCGACCTCACCACCCCAAATACAA
TACTTGTCATCTCTCAACCCCCAGACCAGCACTGCGCCGTAGTCGGAGGC
ATCATGGCCCTTCGGATGAAAGTTCGGGGGGTGCTCGGCGTGGTGGTCGA
CGGAAGAGTGCGCGATCGCGCGGAGCTCAAGGCCTCTGGATTGGGGATCT
GGGCGAGGGGAGGGTCGACGGTGGGGAGTGGGGCCGAGGCGAAGCCGGGC
GAGATGGGTGGGGAGGTGTGTGTTTCGGGGGTTACTGTACGGGAGGTATG
TCTTTCTTTCTTTCTTTTTGTTGTAAGTGTTTTGAGAATTGGGTTGGGTT
GGCTAATGTGTGTGCAGGGAGACATCATCTTCTGCGATTACGAGGAAGGA
GGGGTGGTGGCTATACCTCGGGACTTGCTGGATCGGGTTCTCGAGCTGAT
GCCGAAGTTGGCGGGGATGGATGATAAGGTCAAGGAGGCGGTGGAGGGGG
GAATGAGTGTGTTTGAGGCATTTGGGAAGTTTAGGGGGAAGATCTAA
back to top

Coding sequence (CDS) from alignment at An04:1410687..1411583-

>CBS51388_003408-T1 ID=CBS51388_003408-T1|Name=CBS51388_003408-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2808bp|location=Sequence derived from alignment at An04:1410687..1411583- (Aspergillus niger CBS 513.88)
GGAGACATCATCTTCTGCGATTACGAGGAAGGAGGGGTGGTGGCTATACC
TCGGGACTTGCTGGATCGGGTTCTCGAGCTGATGCCGAAGTTGGCGGGGA
TGGATGATAAGGTCAAGGAGGCGGTGGAGGGGGGAATGAGTGTGTTTGAG
GCATTTGGGAAGTTTAGGGGGAAGATCTAACCCCCTACCCTCCAAACACC
ACCACACCCACCAAACTAATCGCCCCCGCCAGCACCCTTCAATTCATCCC
CAAATCCAACCCCACCCCCACCAGCAGCAGCATCCCACCCTCCACGCACT
GGTCCGACCTCACCACCCCAAATACAATACTTGTCATCTCTCAACCCCCA
GACCAGCACTGCGCCGTAGTCGGAGGCATCATGGCCCTTCGGATGAAAGT
TCGGGGGGTGCTCGGCGTGGTGGTCGACGGAAGAGTGCGCGATCGCGCGG
AGCTCAAGGCCTCTGGATTGGGGATCTGGGCGAGGGGAGGGTCGACGGTG
GGGAGTGGGGCCGAGGCGAAGCCGGGCGAGATGGGTGGGGAGGTGTGTGT
TTCGGGGGTTACTGTACGGGAGGTCTCCGACGCCCTCCTCAAACTCCAAT
CCGTCCCTTCAAATACCCCACCCCGAGCAGGCTACATCGCAGACCTAAAT
GTCGACCCTCGAAGAAAAGATCTCCCTCTTACACAACTACTCGGCCTGCG
ATGGAGACATCATCTTCTGCGATTACGAGGAAGGAGGGGTGGTGGCTATA
CCTCGGGACTTGCTGGATCGGGTTCTCGAGCTGATGCCGAAGTTGGCGGG
GATGGATGATAAGGTCAAGGAGGCGGTGGAGGGGGGAATGAGTGTGTTTG
AGGCATTTGGGAAGTTTAGGGGGAAGATCTAACCCCCTACCCTCCAAACA
CCACCACACCCACCAAACTAATCGCCCCCGCCAGCACCCTTCAATTCATC
CCCAAATCCAACCCCACCCCCACCAGCAGCAGCATCCCACCCTCCACGCA
CTGGTCCGACCTCACCACCCCAAATACAATACTTGTCATCTCTCAACCCC
CAGACCAGCACTGCGCCGTAGTCGGAGGCATCATGGCCCTTCGGATGAAA
GTTCGGGGGGTGCTCGGCGTGGTGGTCGACGGAAGAGTGCGCGATCGCGC
GGAGCTCAAGGCCTCTGGATTGGGGATCTGGGCGAGGGGAGGGTCGACGG
TGGGGAGTGGGGCCGAGGCGAAGCCGGGCGAGATGGGTGGGGAGGTGTGT
GTTTCGGGGGTTACTGTACGGGAGGTCTCCGACGCCCTCCTCAAACTCCA
ATCCGTCCCTTCAAATACCCCACCCCGAGCAGGCTACATCGCAGACCTAA
ATGTCGACCCTCGAAGAAAAGATCTCCCTCTTACACAACTACTCGGCCTG
CGATGGAGACATCATCTTCTGCGATTACGAGGAAGGAGGGGTGGTGGCTA
TACCTCGGGACTTGCTGGATCGGGTTCTCGAGCTGATGCCGAAGTTGGCG
GGGATGGATGATAAGGTCAAGGAGGCGGTGGAGGGGGGAATGAGTGTGTT
TGAGGCATTTGGGAAGTTTAGGGGGAAGATCTAACCCCCTACCCTCCAAA
CACCACCACACCCACCAAACTAATCGCCCCCGCCAGCACCCTTCAATTCA
TCCCCAAATCCAACCCCACCCCCACCAGCAGCAGCATCCCACCCTCCACG
CACTGGTCCGACCTCACCACCCCAAATACAATACTTGTCATCTCTCAACC
CCCAGACCAGCACTGCGCCGTAGTCGGAGGCATCATGGCCCTTCGGATGA
AAGTTCGGGGGGTGCTCGGCGTGGTGGTCGACGGAAGAGTGCGCGATCGC
GCGGAGCTCAAGGCCTCTGGATTGGGGATCTGGGCGAGGGGAGGGTCGAC
GGTGGGGAGTGGGGCCGAGGCGAAGCCGGGCGAGATGGGTGGGGAGGTGT
GTGTTTCGGGGGTTACTGTACGGGAGGTCTCCGACGCCCTCCTCAAACTC
CAATCCGTCCCTTCAAATACCCCACCCCGAGCAGGCTACATCGCAGACCT
AAATGTCGACCCTCGAAGAAAAGATCTCCCTCTTACACAACTACTCGGCC
TGCGATGGAGACATCATCTTCTGCGATTACGAGGAAGGAGGGGTGGTGGC
TATACCTCGGGACTTGCTGGATCGGGTTCTCGAGCTGATGCCGAAGTTGG
CGGGGATGGATGATAAGGTCAAGGAGGCGGTGGAGGGGGGAATGAGTGTG
TTTGAGGCATTTGGGAAGTTTAGGGGGAAGATCTAACCCCCTACCCTCCA
AACACCACCACACCCACCAAACTAATCGCCCCCGCCAGCACCCTTCAATT
CATCCCCAAATCCAACCCCACCCCCACCAGCAGCAGCATCCCACCCTCCA
CGCACTGGTCCGACCTCACCACCCCAAATACAATACTTGTCATCTCTCAA
CCCCCAGACCAGCACTGCGCCGTAGTCGGAGGCATCATGGCCCTTCGGAT
GAAAGTTCGGGGGGTGCTCGGCGTGGTGGTCGACGGAAGAGTGCGCGATC
GCGCGGAGCTCAAGGCCTCTGGATTGGGGATCTGGGCGAGGGGAGGGTCG
ACGGTGGGGAGTGGGGCCGAGGCGAAGCCGGGCGAGATGGGTGGGGAGGT
GTGTGTTTCGGGGGTTACTGTACGGGAGGTCTCCGACGCCCTCCTCAAAC
TCCAATCCGTCCCTTCAAATACCCCACCCCGAGCAGGCTACATCGCAGAC
CTAAATGTCGACCCTCGAAGAAAAGATCTCCCTCTTACACAACTACTCGG
CCTGCGAT
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_003408CBS51388_003408Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003408-T1CBS51388_003408-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003408-T1.cdsCBS51388_003408-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003408-T1.exon4CBS51388_003408-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_003408-T1.exon3CBS51388_003408-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_003408-T1.exon2CBS51388_003408-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_003408-T1.exon1CBS51388_003408-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR036704
DBxrefInterPro:IPR005493
DBxrefPFAM:PF03737
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:1410687..1411583 -
Powered by Drupal