You are here

Home

CBS51388_003425-T1, CBS51388_003425-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003425-T1
Unique NameCBS51388_003425-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:1482798..1484374+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003425-T1 ID=CBS51388_003425-T1|Name=CBS51388_003425-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1577bp|location=Sequence derived from alignment at An04:1482798..1484374+ (Aspergillus niger CBS 513.88)
ATGGTCCAAATCAGTGAAGTGAAGGGCAACTCGCGCGAGAACAGAACCGC
GGCCCACACGCATATCAAGGGTCTTGGTCTACGACAAGATGGCACTGCGG
AGGCTTCAGGAGATGGTTTCGTTGGACAGGCAACTGCTCGTGAGGTACGC
GACAACATTGGCGCTCAGAAGTCTTACTCTCTAAGCTCTTAAACTTATGT
ACTAACCCGGAGGCTTGATATGACAGGCATGCGGTGTCGTTGTTGATCTG
ATCAAGGCGAAGAAGATGGCCGGTCGTGCCGTCCTCCTGGCTGGTGGACC
CGGAACTGGAAAGACTGCTCTGGCCCTCGCCGTGTCGCAGGAGCTGGGAA
CCAAAGTCCCCTTCTGTCCGATCGTTGGTAGTGAGATCTACTCTGCTGAG
GTCAAGAAAACAGAGGCACTCATGGAGAACTTCCGGAGGGCAATTGGTAC
GCGATCCGTACAATCTTGACGCGAAAGTCTCAATAGCCTCTAATGCATCG
ATAGGTCTCCGTGTTCGCGAAACGAAGGAAGTATACGAAGGTGAAGTCAC
GGAACTTACCCCCGAAGAGACGGAGAACCCTCTGGGAGGATACGGACGCA
CGATCAGCCATCTGATCATCGGCCTAAAGTCTGCCAAGGGCACCAAGAAG
CTGCGCCTGGACCCCAGCATCTACGAAGCCATCCAAAAGGAGCGGGTCAC
CGTGGGAGACGTCATCTACATCGAAGCGAATACCGGAGCCTGCAAGCGTG
TCGGACGGTCCGATGCCTACGCCACCGAGTTCGATCTTGAAGCAGAGGAA
TACGTGCCCGTACCGAAGGGAGAGGTTCACAAGAAGAAGGAAATCGTCCA
GGATGTGACGCTGCACGATCTGGACATGGCCAATGCGCGGCCCCAGGGTG
GACAGGATGTGATGAGCATGATGGGACAGCTCATGAAGCCCAAGAAGACC
GAAATCACGGAGAAGTTGCGCCAGGAGATCAACAAGGTCGTCAACCGCTA
CATTGACCAGGGCGTTGCGGAGCTCGTTCCCGGTGTCCTCTTCATCGACG
AGGTAGACTATTCCAGCCCTTCACAGCCTTACCTTACAATCAGTTGCTAA
CCCCACCCCTAGGTTCACATGCTCGATATCGAATGCTTCACATACCTCAA
CCGGGCACTCGAATCCTCCATCTCCCCCATTGTCATCCTTGCCTCTAACC
GCGGCAACACGGTCATCCGCGGCACCGACGACATCTCCGCCGCCCACGGC
ATCCCTCCCGACCTTCTCGCCCGTCTCCTCATCATCCCCACCCACCCTTA
CTCTCCCGATGAGATCAAGACCATCATTCGCCTGCGCGCCAAGACAGAAG
GCCTCAACATCACCGACCCCGCCCTGGAGAAGGTTGCCGAGCACGGCAGC
AAGGTCAGCTTGCGGTATGCTCTGCAATTACTCACCCCGGCTAGTATCCT
TGCCAAGGTGAATGGACGCCCAGGAGGTATCGAGGAAGCCGACGTGGCAG
AGTGCGAAGACCTGTTCCTTGATGCGCGGAGGAGCGCCACGATCGTGAAC
CAGGATAGTGAGAAGTACCTCAAATAA
back to top

Coding sequence (CDS) from alignment at An04:1482798..1484374+

>CBS51388_003425-T1 ID=CBS51388_003425-T1|Name=CBS51388_003425-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5508bp|location=Sequence derived from alignment at An04:1482798..1484374+ (Aspergillus niger CBS 513.88)
ATGGTCCAAATCAGTGAAGTGAAGGGCAACTCGCGCGAGAACAGAACCGC
GGCCCACACGCATATCAAGGGTCTTGGTCTACGACAAGATGGCACTGCGG
AGGCTTCAGGAGATGGTTTCGTTGGACAGGCAACTGCTCGTGAGGCATGC
GGTGTCGTTGTTGATCTGATCAAGGCGAAGAAGATGGCCGGTCGTGCCGT
CCTCCTGGCTGGTGGACCCGGAACTGGAAAGACTGCTCTGGCCCTCGCCG
TGTCGCAGGAGCTGGGAACCAAAGTCCCCTTCTGTCCGATCGTTGGTAGT
GAGATCTACTCTGCTGAGGTCAAGAAAACAGAGGCACTCATGGAGAACTT
CCGGAGGGCAATTGGTCTCCGTGTTCGCGAAACGAAGGAAGTATACGAAG
GTGAAGTCACGGAACTTACCCCCGAAGAGACGGAGAACCCTCTGGGAGGA
TACGGACGCACGATCAGCCATCTGATCATCGGCCTAAAGTCTGCCAAGGG
CACCAAGAAGCTGCGCCTGGACCCCAGCATCTACGAAGCCATCCAAAAGG
AGCGGGTCACCGTGGGAGACGTCATCTACATCGAAGCGAATACCGGAGCC
TGCAAGCGTGTCGGACGGTCCGATGCCTACGCCACCGAGTTCGATCTTGA
AGCAGAGGAATACGTGCCCGTACCGAAGGGAGAGGTTCACAAGAAGAAGG
AAATCGTCCAGGATGTGACGCTGCACGATCTGGACATGGCCAATGCGCGG
CCCCAGGGTGGACAGGATGTGATGAGCATGATGGGACAGCTCATGAAGCC
CAAGAAGACCGAAATCACGGAGAAGTTGCGCCAGGAGATCAACAAGGTCG
TCAACCGCTACATTGACCAGGGCGTTGCGGAGCTCGTTCCCGGTGTCCTC
TTCATCGACGAGGTTCACATGCTCGATATCGAATGCTTCACATACCTCAA
CCGGGCACTCGAATCCTCCATCTCCCCCATTGTCATCCTTGCCTCTAACC
GCGGCAACACGGTCATCCGCGGCACCGACGACATCTCCGCCGCCCACGGC
ATCCCTCCCGACCTTCTCGCCCGTCTCCTCATCATCCCCACCCACCCTTA
CTCTCCCGATGAGATCAAGACCATCATTCGCCTGCGCGCCAAGACAGAAG
GCCTCAACATCACCGACCCCGCCCTGGAGAAGGTTGCCGAGCACGGCAGC
AAGGTCAGCTTGCGGTATGCTCTGCAATTACTCACCCCGGCTAGTATCCT
TGCCAAGGTGAATGGACGCCCAGGAGGTATCGAGGAAGCCGACGTGGCAG
AGTGCGAAGACCTGTTCCTTGATGCGCGGAGGAGCGCCACGATCGTGAAC
CAGGATAGTGAGAAGTACCTCAAATAAATGGTCCAAATCAGTGAAGTGAA
GGGCAACTCGCGCGAGAACAGAACCGCGGCCCACACGCATATCAAGGGTC
TTGGTCTACGACAAGATGGCACTGCGGAGGCTTCAGGAGATGGTTTCGTT
GGACAGGCAACTGCTCGTGAGGCATGCGGTGTCGTTGTTGATCTGATCAA
GGCGAAGAAGATGGCCGGTCGTGCCGTCCTCCTGGCTGGTGGACCCGGAA
CTGGAAAGACTGCTCTGGCCCTCGCCGTGTCGCAGGAGCTGGGAACCAAA
GTCCCCTTCTGTCCGATCGTTGGTAGTGAGATCTACTCTGCTGAGGTCAA
GAAAACAGAGGCACTCATGGAGAACTTCCGGAGGGCAATTGGTCTCCGTG
TTCGCGAAACGAAGGAAGTATACGAAGGTGAAGTCACGGAACTTACCCCC
GAAGAGACGGAGAACCCTCTGGGAGGATACGGACGCACGATCAGCCATCT
GATCATCGGCCTAAAGTCTGCCAAGGGCACCAAGAAGCTGCGCCTGGACC
CCAGCATCTACGAAGCCATCCAAAAGGAGCGGGTCACCGTGGGAGACGTC
ATCTACATCGAAGCGAATACCGGAGCCTGCAAGCGTGTCGGACGGTCCGA
TGCCTACGCCACCGAGTTCGATCTTGAAGCAGAGGAATACGTGCCCGTAC
CGAAGGGAGAGGTTCACAAGAAGAAGGAAATCGTCCAGGATGTGACGCTG
CACGATCTGGACATGGCCAATGCGCGGCCCCAGGGTGGACAGGATGTGAT
GAGCATGATGGGACAGCTCATGAAGCCCAAGAAGACCGAAATCACGGAGA
AGTTGCGCCAGGAGATCAACAAGGTCGTCAACCGCTACATTGACCAGGGC
GTTGCGGAGCTCGTTCCCGGTGTCCTCTTCATCGACGAGGTTCACATGCT
CGATATCGAATGCTTCACATACCTCAACCGGGCACTCGAATCCTCCATCT
CCCCCATTGTCATCCTTGCCTCTAACCGCGGCAACACGGTCATCCGCGGC
ACCGACGACATCTCCGCCGCCCACGGCATCCCTCCCGACCTTCTCGCCCG
TCTCCTCATCATCCCCACCCACCCTTACTCTCCCGATGAGATCAAGACCA
TCATTCGCCTGCGCGCCAAGACAGAAGGCCTCAACATCACCGACCCCGCC
CTGGAGAAGGTTGCCGAGCACGGCAGCAAGGTCAGCTTGCGGTATGCTCT
GCAATTACTCACCCCGGCTAGTATCCTTGCCAAGGTGAATGGACGCCCAG
GAGGTATCGAGGAAGCCGACGTGGCAGAGTGCGAAGACCTGTTCCTTGAT
GCGCGGAGGAGCGCCACGATCGTGAACCAGGATAGTGAGAAGTACCTCAA
ATAAATGGTCCAAATCAGTGAAGTGAAGGGCAACTCGCGCGAGAACAGAA
CCGCGGCCCACACGCATATCAAGGGTCTTGGTCTACGACAAGATGGCACT
GCGGAGGCTTCAGGAGATGGTTTCGTTGGACAGGCAACTGCTCGTGAGGC
ATGCGGTGTCGTTGTTGATCTGATCAAGGCGAAGAAGATGGCCGGTCGTG
CCGTCCTCCTGGCTGGTGGACCCGGAACTGGAAAGACTGCTCTGGCCCTC
GCCGTGTCGCAGGAGCTGGGAACCAAAGTCCCCTTCTGTCCGATCGTTGG
TAGTGAGATCTACTCTGCTGAGGTCAAGAAAACAGAGGCACTCATGGAGA
ACTTCCGGAGGGCAATTGGTCTCCGTGTTCGCGAAACGAAGGAAGTATAC
GAAGGTGAAGTCACGGAACTTACCCCCGAAGAGACGGAGAACCCTCTGGG
AGGATACGGACGCACGATCAGCCATCTGATCATCGGCCTAAAGTCTGCCA
AGGGCACCAAGAAGCTGCGCCTGGACCCCAGCATCTACGAAGCCATCCAA
AAGGAGCGGGTCACCGTGGGAGACGTCATCTACATCGAAGCGAATACCGG
AGCCTGCAAGCGTGTCGGACGGTCCGATGCCTACGCCACCGAGTTCGATC
TTGAAGCAGAGGAATACGTGCCCGTACCGAAGGGAGAGGTTCACAAGAAG
AAGGAAATCGTCCAGGATGTGACGCTGCACGATCTGGACATGGCCAATGC
GCGGCCCCAGGGTGGACAGGATGTGATGAGCATGATGGGACAGCTCATGA
AGCCCAAGAAGACCGAAATCACGGAGAAGTTGCGCCAGGAGATCAACAAG
GTCGTCAACCGCTACATTGACCAGGGCGTTGCGGAGCTCGTTCCCGGTGT
CCTCTTCATCGACGAGGTTCACATGCTCGATATCGAATGCTTCACATACC
TCAACCGGGCACTCGAATCCTCCATCTCCCCCATTGTCATCCTTGCCTCT
AACCGCGGCAACACGGTCATCCGCGGCACCGACGACATCTCCGCCGCCCA
CGGCATCCCTCCCGACCTTCTCGCCCGTCTCCTCATCATCCCCACCCACC
CTTACTCTCCCGATGAGATCAAGACCATCATTCGCCTGCGCGCCAAGACA
GAAGGCCTCAACATCACCGACCCCGCCCTGGAGAAGGTTGCCGAGCACGG
CAGCAAGGTCAGCTTGCGGTATGCTCTGCAATTACTCACCCCGGCTAGTA
TCCTTGCCAAGGTGAATGGACGCCCAGGAGGTATCGAGGAAGCCGACGTG
GCAGAGTGCGAAGACCTGTTCCTTGATGCGCGGAGGAGCGCCACGATCGT
GAACCAGGATAGTGAGAAGTACCTCAAATAAATGGTCCAAATCAGTGAAG
TGAAGGGCAACTCGCGCGAGAACAGAACCGCGGCCCACACGCATATCAAG
GGTCTTGGTCTACGACAAGATGGCACTGCGGAGGCTTCAGGAGATGGTTT
CGTTGGACAGGCAACTGCTCGTGAGGCATGCGGTGTCGTTGTTGATCTGA
TCAAGGCGAAGAAGATGGCCGGTCGTGCCGTCCTCCTGGCTGGTGGACCC
GGAACTGGAAAGACTGCTCTGGCCCTCGCCGTGTCGCAGGAGCTGGGAAC
CAAAGTCCCCTTCTGTCCGATCGTTGGTAGTGAGATCTACTCTGCTGAGG
TCAAGAAAACAGAGGCACTCATGGAGAACTTCCGGAGGGCAATTGGTCTC
CGTGTTCGCGAAACGAAGGAAGTATACGAAGGTGAAGTCACGGAACTTAC
CCCCGAAGAGACGGAGAACCCTCTGGGAGGATACGGACGCACGATCAGCC
ATCTGATCATCGGCCTAAAGTCTGCCAAGGGCACCAAGAAGCTGCGCCTG
GACCCCAGCATCTACGAAGCCATCCAAAAGGAGCGGGTCACCGTGGGAGA
CGTCATCTACATCGAAGCGAATACCGGAGCCTGCAAGCGTGTCGGACGGT
CCGATGCCTACGCCACCGAGTTCGATCTTGAAGCAGAGGAATACGTGCCC
GTACCGAAGGGAGAGGTTCACAAGAAGAAGGAAATCGTCCAGGATGTGAC
GCTGCACGATCTGGACATGGCCAATGCGCGGCCCCAGGGTGGACAGGATG
TGATGAGCATGATGGGACAGCTCATGAAGCCCAAGAAGACCGAAATCACG
GAGAAGTTGCGCCAGGAGATCAACAAGGTCGTCAACCGCTACATTGACCA
GGGCGTTGCGGAGCTCGTTCCCGGTGTCCTCTTCATCGACGAGGTTCACA
TGCTCGATATCGAATGCTTCACATACCTCAACCGGGCACTCGAATCCTCC
ATCTCCCCCATTGTCATCCTTGCCTCTAACCGCGGCAACACGGTCATCCG
CGGCACCGACGACATCTCCGCCGCCCACGGCATCCCTCCCGACCTTCTCG
CCCGTCTCCTCATCATCCCCACCCACCCTTACTCTCCCGATGAGATCAAG
ACCATCATTCGCCTGCGCGCCAAGACAGAAGGCCTCAACATCACCGACCC
CGCCCTGGAGAAGGTTGCCGAGCACGGCAGCAAGGTCAGCTTGCGGTATG
CTCTGCAATTACTCACCCCGGCTAGTATCCTTGCCAAGGTGAATGGACGC
CCAGGAGGTATCGAGGAAGCCGACGTGGCAGAGTGCGAAGACCTGTTCCT
TGATGCGCGGAGGAGCGCCACGATCGTGAACCAGGATAGTGAGAAGTACC
TCAAATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003678DNA helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RVB1CBS51388_003425Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003425-T1.exon1CBS51388_003425-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_003425-T1.exon2CBS51388_003425-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_003425-T1.exon3CBS51388_003425-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_003425-T1.exon4CBS51388_003425-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003425-T1.cdsCBS51388_003425-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003425-T1CBS51388_003425-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR041048
DBxrefInterPro:IPR010339
DBxrefInterPro:IPR003593
DBxrefPFAM:PF17856
DBxrefPFAM:PF06068
ProductRuvB ATP-dependent DNA helicase pontin
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:1482798..1484374 +
Powered by Drupal