You are here

Home

CBS51388_003441-T1, CBS51388_003441-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003441-T1
Unique NameCBS51388_003441-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:1518271..1520878-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003441-T1 ID=CBS51388_003441-T1|Name=CBS51388_003441-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2608bp|location=Sequence derived from alignment at An04:1518271..1520878- (Aspergillus niger CBS 513.88)
ATGGGCAAGAAAGCGTCTCGCCCGCCCGCGACGAAAACTTCCTCCGCTGC
GTCGCCCGCGGCATCCGGCCTCACATATACCGGGAATAAGTCATCGATAC
TGAAGGCTTCGTTTGCCCCGTCGGAATACCAATTGGCGCTTTTTGCATCG
GTCATCCAGGGTCTCGATGCTCAGCATCTCCGCATCCACGATACGAATAC
CGGACGGTTACAATGCGAGCATGTCTTGGGTCCTAAGGAGACCGTCACTT
CCCTAGACTGGGGTTACTACTCCAGCACAAAGAAGGAGCGCGATCAGCAG
TCTAAGAAGAAGAGAAAGAGACCTTCCGACGTCAATGGCAACGGGTTCGA
CCAGGGAGACGTAGTGGTTGCCATTGGTACCAGCGCCTCCGAAATCCGCA
TGTACTCGCCTGTGGAGGACAAGATCGTCGGAACGCTTGCAAACGGACAC
GAGAAAGGTATCAGAGACTTCAAGTTCACCTCCGGCCGACCTGGACAGGA
GGGTTGGAGTATCGGCGGTGATAATAAGCTTGTGCAGTGGGATCTGTTCA
CCGGGAAGACGACCAGGTAGCTCTTTCCCCAGCAACTTCGGTACAGCCCG
GCATCACACCTAACCGTTATCTAGGACAATTCATATTCCCAGCACATCGG
CCCTCAGCACACTTGCGCGCCCGCTTCCCTCGAACCCACCTGTTATCTGC
GCCTCTCAGACCCCGTACGTCGTTAGCGTAGAAAAAGATGAAGCCCCAGT
CACTTTCGATGCGATGCGGAACCCGATCAAGAACATCATCCCTTCTTCTA
CGGATTCTGCCGCTGCCGGACTGTTCCTCGCTGCTGATGGCGACCGTTAC
ATTACTGTTTTCGATGTCGAGAAAAGAAAGCTTGCCCTGAACCTCGTGGC
CGAGAATGGTGTATCATCAGTGTCTCTGTACACTGGTGCGGAACGGAAGG
GTATTACTCTGCCGGCAGAGAAGCAGGTCATCGCCGCGGTCACCGAGGAT
GGCACCATCGAACTCTTCACTCGGCCCTTCGTGCTGCCGAACGATCAGTC
CAATGCAAAGGGCGCCGCTAGCCTCAAGGCCAGATCGAAGCAGGCCATTC
GGAGAGCTGATTCTCAAATCAAGGTGACTGTGTCCGCAACGTCCAATGCC
CTGGTTTCCATGGTGGCCGCTTCGTTCGAAGGTCCGGATTTGGTTGTTGC
TTGGGCCGAGGGCGGCGTTGTTCCAGTTTTCGAGCGGATCAAGTGGCTCA
ACGAAGAGACGGACGACTTGCTTTTCACAGGCACCAAGCAGATTGTCAAG
TCCAAGTCGGGTTCGGTTCTGGGATCGGTTACGACGAACGGAGCGAGAGC
CGCTAACGAGAACCAAGTCGACGAGTCCAAGGCAGTTGTGGAACAGGGAA
ATGTTATTGAAGACGATATTGAGATGCAAGATTCCAAGGATGCTGCTTCC
GTGGCTGGCAGCGACGAGGAGTCGGACGACGAGGAGGCGGAACCCAAGCA
AAAGAACGAATCCAAGCAGTTGCAGAAGAAGACTGACGCGGACAGCGATG
TCGAGATGGGCAATGCACAGGAATCCGGCTCGGAGGAAGATGAGGAAGAT
GAGACAGGCGAGCCTTCTTTCGGGGAGCTCATGCGCGCCAACCAGGAGGT
TGACGTGGAGGCTGAGCTTGAGGACGACGTTCATATGGGATCGCTTGTTC
CAGGCAAGCCCAGCGCAGCCGTGCAGCAGATTCCCACGGGCGTGTCCCTT
TCCACCGTACTCACCCAGTCCCTTAAAACCAACGACAACGCCATGCTTGA
GTCCTGCTTCCACACTGGCGAACTTTCCATCATCCGCTCCACCATCCAGC
GTCTCGATTCCTCTCTTGCAGCGACCCTACTTCAGAAACTCGCAGAACGC
CTCTCCACTCGGCCGGGTCGCTATGGTCACCTACTCGTGTGGGTGCAATG
GACCTGTGTCGCCCACGGTGGAGCTCTCGCCGGCAAGCCCGAGCTTCTGA
AGCGGATGTCCACCCTCTTCAAGGTCATGGAGCAGCGCTCCTCCAGCCTT
CCTTCTCTGCTCCTGCTCAAGGGCAAGCTGGACATGCTGGACGCACAGCT
TGGCCTGCGCCGGTCGATCCGTGGCGGTGAAGAGGCCATGGAGAGCGAGG
ATGAAGAGAACATCATCTACGTGGAGGGCCAAGAAGAGGACGAGGACGAG
GACAGCGACGTTGACGCCAAGAACATGACCACCCCACGGAAGTCCATACG
CGACCAGGCCTTCGACGAAGAGGAGTCTATGATGAACGGTGTCCAGACTG
GCGACGAGTCCGAGGACGAGGAAGACGACGGTAGCGAAGAAGAAGAGGAA
GAGGACGAGAACATCCTCGACGTGGAGGCGGAGGAGTCCGCCGGATCCTC
CGACGCCGAGGAGTCCCTAGAGGAAGATGAGGACGAGGACGACGAGGATG
CAGAGAGTGCCGGATCGATGGTAGATTTCATTGCGGACACGGAAGACGAG
GAGTCGGAGGACGAACAAGCACTGTCGACCTCGAAGCCGCCACCGTCCAA
GAAGGCCCGACTGAGCGGCGGAGGTCGAGGAAAGGGGAAGAACAAGGGCA
GAAAATAA
back to top

Coding sequence (CDS) from alignment at An04:1518271..1520878-

>CBS51388_003441-T1 ID=CBS51388_003441-T1|Name=CBS51388_003441-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5100bp|location=Sequence derived from alignment at An04:1518271..1520878- (Aspergillus niger CBS 513.88)
GACAATTCATATTCCCAGCACATCGGCCCTCAGCACACTTGCGCGCCCGC
TTCCCTCGAACCCACCTGTTATCTGCGCCTCTCAGACCCCGTACGTCGTT
AGCGTAGAAAAAGATGAAGCCCCAGTCACTTTCGATGCGATGCGGAACCC
GATCAAGAACATCATCCCTTCTTCTACGGATTCTGCCGCTGCCGGACTGT
TCCTCGCTGCTGATGGCGACCGTTACATTACTGTTTTCGATGTCGAGAAA
AGAAAGCTTGCCCTGAACCTCGTGGCCGAGAATGGTGTATCATCAGTGTC
TCTGTACACTGGTGCGGAACGGAAGGGTATTACTCTGCCGGCAGAGAAGC
AGGTCATCGCCGCGGTCACCGAGGATGGCACCATCGAACTCTTCACTCGG
CCCTTCGTGCTGCCGAACGATCAGTCCAATGCAAAGGGCGCCGCTAGCCT
CAAGGCCAGATCGAAGCAGGCCATTCGGAGAGCTGATTCTCAAATCAAGG
TGACTGTGTCCGCAACGTCCAATGCCCTGGTTTCCATGGTGGCCGCTTCG
TTCGAAGGTCCGGATTTGGTTGTTGCTTGGGCCGAGGGCGGCGTTGTTCC
AGTTTTCGAGCGGATCAAGTGGCTCAACGAAGAGACGGACGACTTGCTTT
TCACAGGCACCAAGCAGATTGTCAAGTCCAAGTCGGGTTCGGTTCTGGGA
TCGGTTACGACGAACGGAGCGAGAGCCGCTAACGAGAACCAAGTCGACGA
GTCCAAGGCAGTTGTGGAACAGGGAAATGTTATTGAAGACGATATTGAGA
TGCAAGATTCCAAGGATGCTGCTTCCGTGGCTGGCAGCGACGAGGAGTCG
GACGACGAGGAGGCGGAACCCAAGCAAAAGAACGAATCCAAGCAGTTGCA
GAAGAAGACTGACGCGGACAGCGATGTCGAGATGGGCAATGCACAGGAAT
CCGGCTCGGAGGAAGATGAGGAAGATGAGACAGGCGAGCCTTCTTTCGGG
GAGCTCATGCGCGCCAACCAGGAGGTTGACGTGGAGGCTGAGCTTGAGGA
CGACGTTCATATGGGATCGCTTGTTCCAGGCAAGCCCAGCGCAGCCGTGC
AGCAGATTCCCACGGGCGTGTCCCTTTCCACCGTACTCACCCAGTCCCTT
AAAACCAACGACAACGCCATGCTTGAGTCCTGCTTCCACACTGGCGAACT
TTCCATCATCCGCTCCACCATCCAGCGTCTCGATTCCTCTCTTGCAGCGA
CCCTACTTCAGAAACTCGCAGAACGCCTCTCCACTCGGCCGGGTCGCTAT
GGTCACCTACTCGTGTGGGTGCAATGGACCTGTGTCGCCCACGGTGGAGC
TCTCGCCGGCAAGCCCGAGCTTCTGAAGCGGATGTCCACCCTCTTCAAGG
TCATGGAGCAGCGCTCCTCCAGCCTTCCTTCTCTGCTCCTGCTCAAGGGC
AAGCTGGACATGCTGGACGCACAGCTTGGCCTGCGCCGGTCGATCCGTGG
CGGTGAAGAGGCCATGGAGAGCGAGGATGAAGAGAACATCATCTACGTGG
AGGGCCAAGAAGAGGACGAGGACGAGGACAGCGACGTTGACGCCAAGAAC
ATGACCACCCCACGGAAGTCCATACGCGACCAGGCCTTCGACGAAGAGGA
GTCTATGATGAACGGTGTCCAGACTGGCGACGAGTCCGAGGACGAGGAAG
ACGACGGTAGCGAAGAAGAAGAGGAAGAGGACGAGAACATCCTCGACGTG
GAGGCGGAGGAGTCCGCCGGATCCTCCGACGCCGAGGAGTCCCTAGAGGA
AGATGAGGACGAGGACGACGAGGATGCAGAGAGTGCCGGATCGATGGTAG
ATTTCATTGCGGACACGGAAGACGAGGAGTCGGAGGACGAACAAGCACTG
TCGACCTCGAAGCCGCCACCGTCCAAGAAGGCCCGACTGAGCGGCGGAGG
TCGAGGAAAGGGGAAGAACAAGGGCAGAAAATAAATGGGCAAGAAAGCGT
CTCGCCCGCCCGCGACGAAAACTTCCTCCGCTGCGTCGCCCGCGGCATCC
GGCCTCACATATACCGGGAATAAGTCATCGATACTGAAGGCTTCGTTTGC
CCCGTCGGAATACCAATTGGCGCTTTTTGCATCGGTCATCCAGGGTCTCG
ATGCTCAGCATCTCCGCATCCACGATACGAATACCGGACGGTTACAATGC
GAGCATGTCTTGGGTCCTAAGGAGACCGTCACTTCCCTAGACTGGGGTTA
CTACTCCAGCACAAAGAAGGAGCGCGATCAGCAGTCTAAGAAGAAGAGAA
AGAGACCTTCCGACGTCAATGGCAACGGGTTCGACCAGGGAGACGTAGTG
GTTGCCATTGGTACCAGCGCCTCCGAAATCCGCATGTACTCGCCTGTGGA
GGACAAGATCGTCGGAACGCTTGCAAACGGACACGAGAAAGGTATCAGAG
ACTTCAAGTTCACCTCCGGCCGACCTGGACAGGAGGGTTGGAGTATCGGC
GGTGATAATAAGCTTGTGCAGTGGGATCTGTTCACCGGGAAGACGACCAG
GACAATTCATATTCCCAGCACATCGGCCCTCAGCACACTTGCGCGCCCGC
TTCCCTCGAACCCACCTGTTATCTGCGCCTCTCAGACCCCGTACGTCGTT
AGCGTAGAAAAAGATGAAGCCCCAGTCACTTTCGATGCGATGCGGAACCC
GATCAAGAACATCATCCCTTCTTCTACGGATTCTGCCGCTGCCGGACTGT
TCCTCGCTGCTGATGGCGACCGTTACATTACTGTTTTCGATGTCGAGAAA
AGAAAGCTTGCCCTGAACCTCGTGGCCGAGAATGGTGTATCATCAGTGTC
TCTGTACACTGGTGCGGAACGGAAGGGTATTACTCTGCCGGCAGAGAAGC
AGGTCATCGCCGCGGTCACCGAGGATGGCACCATCGAACTCTTCACTCGG
CCCTTCGTGCTGCCGAACGATCAGTCCAATGCAAAGGGCGCCGCTAGCCT
CAAGGCCAGATCGAAGCAGGCCATTCGGAGAGCTGATTCTCAAATCAAGG
TGACTGTGTCCGCAACGTCCAATGCCCTGGTTTCCATGGTGGCCGCTTCG
TTCGAAGGTCCGGATTTGGTTGTTGCTTGGGCCGAGGGCGGCGTTGTTCC
AGTTTTCGAGCGGATCAAGTGGCTCAACGAAGAGACGGACGACTTGCTTT
TCACAGGCACCAAGCAGATTGTCAAGTCCAAGTCGGGTTCGGTTCTGGGA
TCGGTTACGACGAACGGAGCGAGAGCCGCTAACGAGAACCAAGTCGACGA
GTCCAAGGCAGTTGTGGAACAGGGAAATGTTATTGAAGACGATATTGAGA
TGCAAGATTCCAAGGATGCTGCTTCCGTGGCTGGCAGCGACGAGGAGTCG
GACGACGAGGAGGCGGAACCCAAGCAAAAGAACGAATCCAAGCAGTTGCA
GAAGAAGACTGACGCGGACAGCGATGTCGAGATGGGCAATGCACAGGAAT
CCGGCTCGGAGGAAGATGAGGAAGATGAGACAGGCGAGCCTTCTTTCGGG
GAGCTCATGCGCGCCAACCAGGAGGTTGACGTGGAGGCTGAGCTTGAGGA
CGACGTTCATATGGGATCGCTTGTTCCAGGCAAGCCCAGCGCAGCCGTGC
AGCAGATTCCCACGGGCGTGTCCCTTTCCACCGTACTCACCCAGTCCCTT
AAAACCAACGACAACGCCATGCTTGAGTCCTGCTTCCACACTGGCGAACT
TTCCATCATCCGCTCCACCATCCAGCGTCTCGATTCCTCTCTTGCAGCGA
CCCTACTTCAGAAACTCGCAGAACGCCTCTCCACTCGGCCGGGTCGCTAT
GGTCACCTACTCGTGTGGGTGCAATGGACCTGTGTCGCCCACGGTGGAGC
TCTCGCCGGCAAGCCCGAGCTTCTGAAGCGGATGTCCACCCTCTTCAAGG
TCATGGAGCAGCGCTCCTCCAGCCTTCCTTCTCTGCTCCTGCTCAAGGGC
AAGCTGGACATGCTGGACGCACAGCTTGGCCTGCGCCGGTCGATCCGTGG
CGGTGAAGAGGCCATGGAGAGCGAGGATGAAGAGAACATCATCTACGTGG
AGGGCCAAGAAGAGGACGAGGACGAGGACAGCGACGTTGACGCCAAGAAC
ATGACCACCCCACGGAAGTCCATACGCGACCAGGCCTTCGACGAAGAGGA
GTCTATGATGAACGGTGTCCAGACTGGCGACGAGTCCGAGGACGAGGAAG
ACGACGGTAGCGAAGAAGAAGAGGAAGAGGACGAGAACATCCTCGACGTG
GAGGCGGAGGAGTCCGCCGGATCCTCCGACGCCGAGGAGTCCCTAGAGGA
AGATGAGGACGAGGACGACGAGGATGCAGAGAGTGCCGGATCGATGGTAG
ATTTCATTGCGGACACGGAAGACGAGGAGTCGGAGGACGAACAAGCACTG
TCGACCTCGAAGCCGCCACCGTCCAAGAAGGCCCGACTGAGCGGCGGAGG
TCGAGGAAAGGGGAAGAACAAGGGCAGAAAATAAATGGGCAAGAAAGCGT
CTCGCCCGCCCGCGACGAAAACTTCCTCCGCTGCGTCGCCCGCGGCATCC
GGCCTCACATATACCGGGAATAAGTCATCGATACTGAAGGCTTCGTTTGC
CCCGTCGGAATACCAATTGGCGCTTTTTGCATCGGTCATCCAGGGTCTCG
ATGCTCAGCATCTCCGCATCCACGATACGAATACCGGACGGTTACAATGC
GAGCATGTCTTGGGTCCTAAGGAGACCGTCACTTCCCTAGACTGGGGTTA
CTACTCCAGCACAAAGAAGGAGCGCGATCAGCAGTCTAAGAAGAAGAGAA
AGAGACCTTCCGACGTCAATGGCAACGGGTTCGACCAGGGAGACGTAGTG
GTTGCCATTGGTACCAGCGCCTCCGAAATCCGCATGTACTCGCCTGTGGA
GGACAAGATCGTCGGAACGCTTGCAAACGGACACGAGAAAGGTATCAGAG
ACTTCAAGTTCACCTCCGGCCGACCTGGACAGGAGGGTTGGAGTATCGGC
GGTGATAATAAGCTTGTGCAGTGGGATCTGTTCACCGGGAAGACGACCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_003441CBS51388_003441Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003441-T1CBS51388_003441-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003441-T1.cdsCBS51388_003441-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003441-T1.exon2CBS51388_003441-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_003441-T1.exon1CBS51388_003441-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteBUSCO:EOG09264NJ1
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR007148
DBxrefPFAM:PF04003
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:1518271..1520878 -
Powered by Drupal