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CBS51388_003524-T1, CBS51388_003524-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003524-T1
Unique NameCBS51388_003524-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:1800829..1801864-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003524-T1 ID=CBS51388_003524-T1|Name=CBS51388_003524-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1036bp|location=Sequence derived from alignment at An04:1800829..1801864- (Aspergillus niger CBS 513.88)
ATGCCTGCCGAGCAGTCTGCGGCCAGCCCTTCTGGCGCCAAGGAAATCTC
CAAGCCGTCCGCAGAGAATGACCAAGCCGGCGATGATCGCAACGAACCTA
CATCGCCTTCAAAAGAGAAGACGAAGGGAAAATCAGGTGAAGAGGCTAGC
GTGGATGAGGCCAGTACGGACCAAAAAGACGATGATGCTGCTTCGAGAGC
CCGCCAACGACAAGAAAGGTTCAAGGCTCTCCAGGCTCGCGCAGTAAGTT
CATGATAGCGAAGATTCATTGTGCGCTGTGTTCATACTGACATAGTTTTA
GAAAACCGCTACCGAGCGGAATCTGAAAGAAACGGCTGCCGAAACACAGC
GTCTCGCAACCGATCCGTCGCTGCTTTCCTCGCTCTCTCGCAAACATGCT
TTCGCATCGCATAACCTTCTCAAGGCTGACACAGAAGCCGCTGGCGAGGA
CTTCGAACGTAAGCGTGCATGGGACTGGACTGTCGATGAGTCCGAAAAAT
GGGACAAGCGCACGGAAAAGAAGCAGCGTCATCGGGACAATGTCGCATTC
CAGGACTACACCCAAGACGCGCGAAAAGTGTATAAGAGACAGCTGCGGGA
AGTACAGCCTGACCTTGAAACCTACGAGAGGGAGAAGATGGCAGCGATCG
AAAAGGCTGCTGCCAATGGCGATCTCGAGATCGTTGAGACCAACGACGGT
GAAATGATCGCCGTCGATAAGAACGGCTCTTTCTACTCTACAGCTGACAG
TGTTGGCTTTACGGAGAACAAGCCCGACAGAGCTGCTGTTGACAAGCTCG
TGGATAATCTTCGGAAAGCCGAGGAAGTCCGACTCAAGAAGCGGAGGGAC
CGCCGCGGAGACGATGACGGCGACGTCACTTACATCAACGAAAAGAACAA
GCAGTTCAACCAGAAATTATCAAGATTCTATAATAAGGTGAGTTTTCACT
CTGCCATTTGTCAAAGGGGCTAGCTAATTGTTTTCCAGTACACTACGGAG
ATTCGCGACAGCTTCGAGCGTGGTACGATGATCTGA
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Coding sequence (CDS) from alignment at An04:1800829..1801864-

>CBS51388_003524-T1 ID=CBS51388_003524-T1|Name=CBS51388_003524-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2781bp|location=Sequence derived from alignment at An04:1800829..1801864- (Aspergillus niger CBS 513.88)
TACACTACGGAGATTCGCGACAGCTTCGAGCGTGGTACGATGATCTGAAA
AACCGCTACCGAGCGGAATCTGAAAGAAACGGCTGCCGAAACACAGCGTC
TCGCAACCGATCCGTCGCTGCTTTCCTCGCTCTCTCGCAAACATGCTTTC
GCATCGCATAACCTTCTCAAGGCTGACACAGAAGCCGCTGGCGAGGACTT
CGAACGTAAGCGTGCATGGGACTGGACTGTCGATGAGTCCGAAAAATGGG
ACAAGCGCACGGAAAAGAAGCAGCGTCATCGGGACAATGTCGCATTCCAG
GACTACACCCAAGACGCGCGAAAAGTGTATAAGAGACAGCTGCGGGAAGT
ACAGCCTGACCTTGAAACCTACGAGAGGGAGAAGATGGCAGCGATCGAAA
AGGCTGCTGCCAATGGCGATCTCGAGATCGTTGAGACCAACGACGGTGAA
ATGATCGCCGTCGATAAGAACGGCTCTTTCTACTCTACAGCTGACAGTGT
TGGCTTTACGGAGAACAAGCCCGACAGAGCTGCTGTTGACAAGCTCGTGG
ATAATCTTCGGAAAGCCGAGGAAGTCCGACTCAAGAAGCGGAGGGACCGC
CGCGGAGACGATGACGGCGACGTCACTTACATCAACGAAAAGAACAAGCA
GTTCAACCAGAAATTATCAAGATTCTATAATAAGATGCCTGCCGAGCAGT
CTGCGGCCAGCCCTTCTGGCGCCAAGGAAATCTCCAAGCCGTCCGCAGAG
AATGACCAAGCCGGCGATGATCGCAACGAACCTACATCGCCTTCAAAAGA
GAAGACGAAGGGAAAATCAGGTGAAGAGGCTAGCGTGGATGAGGCCAGTA
CGGACCAAAAAGACGATGATGCTGCTTCGAGAGCCCGCCAACGACAAGAA
AGGTTCAAGGCTCTCCAGGCTCGCGCATACACTACGGAGATTCGCGACAG
CTTCGAGCGTGGTACGATGATCTGAAAAACCGCTACCGAGCGGAATCTGA
AAGAAACGGCTGCCGAAACACAGCGTCTCGCAACCGATCCGTCGCTGCTT
TCCTCGCTCTCTCGCAAACATGCTTTCGCATCGCATAACCTTCTCAAGGC
TGACACAGAAGCCGCTGGCGAGGACTTCGAACGTAAGCGTGCATGGGACT
GGACTGTCGATGAGTCCGAAAAATGGGACAAGCGCACGGAAAAGAAGCAG
CGTCATCGGGACAATGTCGCATTCCAGGACTACACCCAAGACGCGCGAAA
AGTGTATAAGAGACAGCTGCGGGAAGTACAGCCTGACCTTGAAACCTACG
AGAGGGAGAAGATGGCAGCGATCGAAAAGGCTGCTGCCAATGGCGATCTC
GAGATCGTTGAGACCAACGACGGTGAAATGATCGCCGTCGATAAGAACGG
CTCTTTCTACTCTACAGCTGACAGTGTTGGCTTTACGGAGAACAAGCCCG
ACAGAGCTGCTGTTGACAAGCTCGTGGATAATCTTCGGAAAGCCGAGGAA
GTCCGACTCAAGAAGCGGAGGGACCGCCGCGGAGACGATGACGGCGACGT
CACTTACATCAACGAAAAGAACAAGCAGTTCAACCAGAAATTATCAAGAT
TCTATAATAAGATGCCTGCCGAGCAGTCTGCGGCCAGCCCTTCTGGCGCC
AAGGAAATCTCCAAGCCGTCCGCAGAGAATGACCAAGCCGGCGATGATCG
CAACGAACCTACATCGCCTTCAAAAGAGAAGACGAAGGGAAAATCAGGTG
AAGAGGCTAGCGTGGATGAGGCCAGTACGGACCAAAAAGACGATGATGCT
GCTTCGAGAGCCCGCCAACGACAAGAAAGGTTCAAGGCTCTCCAGGCTCG
CGCATACACTACGGAGATTCGCGACAGCTTCGAGCGTGGTACGATGATCT
GAAAAACCGCTACCGAGCGGAATCTGAAAGAAACGGCTGCCGAAACACAG
CGTCTCGCAACCGATCCGTCGCTGCTTTCCTCGCTCTCTCGCAAACATGC
TTTCGCATCGCATAACCTTCTCAAGGCTGACACAGAAGCCGCTGGCGAGG
ACTTCGAACGTAAGCGTGCATGGGACTGGACTGTCGATGAGTCCGAAAAA
TGGGACAAGCGCACGGAAAAGAAGCAGCGTCATCGGGACAATGTCGCATT
CCAGGACTACACCCAAGACGCGCGAAAAGTGTATAAGAGACAGCTGCGGG
AAGTACAGCCTGACCTTGAAACCTACGAGAGGGAGAAGATGGCAGCGATC
GAAAAGGCTGCTGCCAATGGCGATCTCGAGATCGTTGAGACCAACGACGG
TGAAATGATCGCCGTCGATAAGAACGGCTCTTTCTACTCTACAGCTGACA
GTGTTGGCTTTACGGAGAACAAGCCCGACAGAGCTGCTGTTGACAAGCTC
GTGGATAATCTTCGGAAAGCCGAGGAAGTCCGACTCAAGAAGCGGAGGGA
CCGCCGCGGAGACGATGACGGCGACGTCACTTACATCAACGAAAAGAACA
AGCAGTTCAACCAGAAATTATCAAGATTCTATAATAAGATGCCTGCCGAG
CAGTCTGCGGCCAGCCCTTCTGGCGCCAAGGAAATCTCCAAGCCGTCCGC
AGAGAATGACCAAGCCGGCGATGATCGCAACGAACCTACATCGCCTTCAA
AAGAGAAGACGAAGGGAAAATCAGGTGAAGAGGCTAGCGTGGATGAGGCC
AGTACGGACCAAAAAGACGATGATGCTGCTTCGAGAGCCCGCCAACGACA
AGAAAGGTTCAAGGCTCTCCAGGCTCGCGCA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SYF2CBS51388_003524Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003524-T1CBS51388_003524-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003524-T1.cdsCBS51388_003524-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003524-T1.exon3CBS51388_003524-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_003524-T1.exon2CBS51388_003524-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_003524-T1.exon1CBS51388_003524-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR013260
DBxrefPFAM:PF08231
Productpre-mRNA-splicing factor syf2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:1800829..1801864 -
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