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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:2224760..2226552+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003657-T1 ID=CBS51388_003657-T1|Name=CBS51388_003657-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1793bp|location=Sequence derived from alignment at An04:2224760..2226552+ (Aspergillus niger CBS 513.88)
ATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTGAA
CCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGGTACATATTGTCTCAT
TGCTTCTTTTGCTTCTCCTTCCGCAGATGCCATATCGTCCAACCAGTCTT
ATCTGCGCTCATCACGTGTTCCTCCATGACTGACTTCTCGCATGCATATA
GTTCTTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCTCTTGATGCGTGAG
TATAGAATTTTTTTGTGTTCTATTCTCTCTCTTTACATCTTGCTATGCTA
TTGCGTTTCCACTCTTGCGGTCGCGGTTCAAGGGACCGATCATCTTATAC
CTCGCTTGGTCATTTCAATACGTTAGGCCTGGCGACGTTTCATCTGTCTG
TATCCCTCGTCCAGCGGGACTGAATCAAGGTACTGCTAGGTGTTGGTGCA
AAGCCATCCTAAAAACACCTCATTGTCCACACATGAACGCATGCCGTCAG
GCGGAGACGGCCGAAGTCGTAAATCTGACGCTGTCAGATGTCACGCTGTC
GCATGCGATGTGCAGTAAATCGACTGTCAATCAAGTTTCACTCACCTCAG
AATGTTTTACCTGCGGCAGCTTCAGACAAGAGACGTCAACAAGCGTGCAG
TATGTCTGATATCAAATGTCGAAATCGACGTCTTCCATTCAGATTTTCTC
GCACTTTACCTGGAATTCGTGCATTAAAGAAGGCTGCACTGAGGTCTATT
TCCCAATTATTTTAATCATACAAGTACCTCTCTCTTCGCGGAATGCCTAC
CTCAAGACCGAAGAAGAACGGGACATCCTGCTACAATTGAGACCAGCCCA
GCCTGCGTATTGAAATCCAAGCATGCATTAGAAATCATCCACACTTGGCA
TTCTTATATCCTCTGCTTCATACACTCACCAACCATGAGATTCAACCAAC
TGATCTCTAACAGTCGCTAATATCAACCTCACCTCCAGATACTTCCAAAG
CTCCTCCGGTGCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCGACA
GTTATAGAGGTTCGCGCACCCTCCCACCACCATGAAATCTTAAAACTAAC
GTCCACCAGATGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAAGGA
GCCATGAAATACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGCATG
CCTAGGGATTGCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCACCC
GCGAAGGCTTTATCAACGGCTGGAGAATAACTGGGTAAATACCCTACTTC
CTCTCGCCATCCCACCCCCACCTACATACAATACAAGCTAATATATGGAT
ATAGATCCGACTCCCTCGACAAAATGATCGCCCACGCCGCCGACATGCGC
GCGCGCATCCCCATCCAACCGGACCTCTTCCGTCGCGTCTACCGCTTCAC
CTTCCCCCTATGCCGCATGCAAGGCCAGCGGAATCTGCAGTTCGAGATCG
CGGCGGAGCAATGGCGCCTGTTCTTCACGCCGCAGAATGGCGGGGTGCAG
TGGAACACGAGCAAGACTCCGTGGTTGGATTGGTGGATTGAGTTCCTGGA
GGAGAGGGGGAAGAGGCCCGTGAATAAGGATCTGTGGGAGCAGGTGGAGG
TGTTTATGCGGAAGACGCTGGAGGATGAGAACTTTGGGTGGTGGAGTGCG
GATGGGGCATGGCCCGGGGCGTTGGATGATTTTGTGGAGTGGGTGCAGAA
GAAGAGGGGGAAGGAAGCGGGGGAAGATATGGAGGTTGAGTAG back to topCoding sequence (CDS) from alignment at An04:2224760..2226552+ >CBS51388_003657-T1 ID=CBS51388_003657-T1|Name=CBS51388_003657-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4065bp|location=Sequence derived from alignment at An04:2224760..2226552+ (Aspergillus niger CBS 513.88)
ATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTGAA
CCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGCTC
GCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCGGT
GCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCGACAGTTATAGAGA
TGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAAAT
ACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGATT
GCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGCTT
TATCAACGGCTGGAGAATAACTGGATCCGACTCCCTCGACAAAATGATCG
CCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCAACCGGACCTCTTC
CGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAGCG
GAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCACGC
CGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGGAT
TGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAGGA
TCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGAGA
ACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATGAT
TTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGATAT
GGAGGTTGAGTAGATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAA
TGCAATTCGTGAACCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTC
TTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCA
AAGCTCCTCCGGTGCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCG
ACAGTTATAGAGATGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAA
GGAGCCATGAAATACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGC
ATGCCTAGGGATTGCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCA
CCCGCGAAGGCTTTATCAACGGCTGGAGAATAACTGGATCCGACTCCCTC
GACAAAATGATCGCCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCA
ACCGGACCTCTTCCGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCA
TGCAAGGCCAGCGGAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGC
CTGTTCTTCACGCCGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGAC
TCCGTGGTTGGATTGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGC
CCGTGAATAAGGATCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACG
CTGGAGGATGAGAACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGG
GGCGTTGGATGATTTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAG
CGGGGGAAGATATGGAGGTTGAGTAGATGCCGCCTTACTCAACAGCTCAA
AAGCAATGTATAATGCAATTCGTGAACCTCACCCAAGCAAAGGATGCAGT
AGCCGCAAAGTTCTTGAAAGCAGCTCGCTGGAATGTGGAGCAAGCTCTTG
ATGCATACTTCCAAAGCTCCTCCGGTGCCGGCGGTAGCACATCCTCATTG
AGCAAGATCTTCGACAGTTATAGAGATGCCCCAGAAGACAACCCCGACGG
GATCGGCATCGAAGGAGCCATGAAATACCTCGGGGACATCAAAGTCGGCC
TCGACGAAGTGGCATGCCTAGGGATTGCCGAGCTACTCAAATCCCCCTCA
ATGGGCGAATTCACCCGCGAAGGCTTTATCAACGGCTGGAGAATAACTGG
ATCCGACTCCCTCGACAAAATGATCGCCCACGCCGCCGACATGCGCGCGC
GCATCCCCATCCAACCGGACCTCTTCCGTCGCGTCTACCGCTTCACCTTC
CCCCTATGCCGCATGCAAGGCCAGCGGAATCTGCAGTTCGAGATCGCGGC
GGAGCAATGGCGCCTGTTCTTCACGCCGCAGAATGGCGGGGTGCAGTGGA
ACACGAGCAAGACTCCGTGGTTGGATTGGTGGATTGAGTTCCTGGAGGAG
AGGGGGAAGAGGCCCGTGAATAAGGATCTGTGGGAGCAGGTGGAGGTGTT
TATGCGGAAGACGCTGGAGGATGAGAACTTTGGGTGGTGGAGTGCGGATG
GGGCATGGCCCGGGGCGTTGGATGATTTTGTGGAGTGGGTGCAGAAGAAG
AGGGGGAAGGAAGCGGGGGAAGATATGGAGGTTGAGTAGATGCCGCCTTA
CTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTGAACCTCACCCAAG
CAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGCTCGCTGGAATGTG
GAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCGGTGCCGGCGGTAG
CACATCCTCATTGAGCAAGATCTTCGACAGTTATAGAGATGCCCCAGAAG
ACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAAATACCTCGGGGAC
ATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGATTGCCGAGCTACT
CAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGCTTTATCAACGGCT
GGAGAATAACTGGATCCGACTCCCTCGACAAAATGATCGCCCACGCCGCC
GACATGCGCGCGCGCATCCCCATCCAACCGGACCTCTTCCGTCGCGTCTA
CCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAGCGGAATCTGCAGT
TCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCACGCCGCAGAATGGC
GGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGGATTGGTGGATTGA
GTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAGGATCTGTGGGAGC
AGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGAGAACTTTGGGTGG
TGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATGATTTTGTGGAGTG
GGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGATATGGAGGTTGAGT
AGATGCCGCCTTACTCAACAGCTCAAAAGCAATGTATAATGCAATTCGTG
AACCTCACCCAAGCAAAGGATGCAGTAGCCGCAAAGTTCTTGAAAGCAGC
TCGCTGGAATGTGGAGCAAGCTCTTGATGCATACTTCCAAAGCTCCTCCG
GTGCCGGCGGTAGCACATCCTCATTGAGCAAGATCTTCGACAGTTATAGA
GATGCCCCAGAAGACAACCCCGACGGGATCGGCATCGAAGGAGCCATGAA
ATACCTCGGGGACATCAAAGTCGGCCTCGACGAAGTGGCATGCCTAGGGA
TTGCCGAGCTACTCAAATCCCCCTCAATGGGCGAATTCACCCGCGAAGGC
TTTATCAACGGCTGGAGAATAACTGGATCCGACTCCCTCGACAAAATGAT
CGCCCACGCCGCCGACATGCGCGCGCGCATCCCCATCCAACCGGACCTCT
TCCGTCGCGTCTACCGCTTCACCTTCCCCCTATGCCGCATGCAAGGCCAG
CGGAATCTGCAGTTCGAGATCGCGGCGGAGCAATGGCGCCTGTTCTTCAC
GCCGCAGAATGGCGGGGTGCAGTGGAACACGAGCAAGACTCCGTGGTTGG
ATTGGTGGATTGAGTTCCTGGAGGAGAGGGGGAAGAGGCCCGTGAATAAG
GATCTGTGGGAGCAGGTGGAGGTGTTTATGCGGAAGACGCTGGAGGATGA
GAACTTTGGGTGGTGGAGTGCGGATGGGGCATGGCCCGGGGCGTTGGATG
ATTTTGTGGAGTGGGTGCAGAAGAAGAGGGGGAAGGAAGCGGGGGAAGAT
ATGGAGGTTGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009060 |
| DBxref | InterPro:IPR005176 |
| DBxref | PFAM:PF14555 |
| DBxref | PFAM:PF03556 |
| Product | Scaffold-type E3 ligase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:2224760..2226552 + |
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