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CBS51388_004123-T1, CBS51388_004123-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004123-T1
Unique NameCBS51388_004123-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An06:519933..521260-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004123-T1 ID=CBS51388_004123-T1|Name=CBS51388_004123-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1328bp|location=Sequence derived from alignment at An06:519933..521260- (Aspergillus niger CBS 513.88)
ATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGG
GGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAG
CCAGAAACCAGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGT
AAAACGGATATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGT
GGGGGGACTGGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACA
TTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTT
ATGCGCGGACACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAA
TGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTG
GTTACGAATATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATC
CAAGAGGTTAACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCC
TTCCTACTACATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACA
TCTTGATCCGCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTA
TGGGGAGAGAACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGA
ATGTGTCACCGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCT
ACTGCAATCTCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACC
AACATTTCCGACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGC
GTGCTTTCTGAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCT
GGGAGAATGTCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAG
GCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCAC
ATTCCGAGTAAGTACACGATAATATTTCAATGTCTTAAGAGATCCTAATT
TGCTTTGTTATATAGAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCC
AGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGCTACGATATTACCA
TCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAG
TGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAAC
AAAAGATTTGGAAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGT
ATGTGACTTGTCCATTCTTTTCCACGGAAATTGCTAACAAGAAGATAGGT
CCTATGCTGCGCCAACCATGGCAGCTGA
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Coding sequence (CDS) from alignment at An06:519933..521260-

>CBS51388_004123-T1 ID=CBS51388_004123-T1|Name=CBS51388_004123-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3672bp|location=Sequence derived from alignment at An06:519933..521260- (Aspergillus niger CBS 513.88)
GTCCTATGCTGCGCCAACCATGGCAGCTGAAACTGGCACGGAGAATCCGT
GAGCGCCTCACGCCCAGTCATCCGCCTACAATGTGACTCCGACGTCCCGT
GCTACGATATTACCATCGAAAACGTGAACCTGTGGGCCAACGACAGCAAC
TATGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTC
TAGTGCAGAGGGAACAAAAGATTTGGAAACCTTTACCAGCAAACAAACTA
TAACTGCCACCCCGTATATGCGCGCCAGCATTCTACCGTTGACTCTGTTC
TTGGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGT
GGACTACAGCACCAAAGCCAGAAACCAGACCTGCAATATCATCGATTACG
GGGCTGTCGCAGATGGTAAAACGGATATATCGCAGGCTCTACTTGATGCC
TGGGGAAACTGTTCCGTGGGGGGACTGGTCTACATCCCACCCGGTAACTA
CTCGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTCTGCAATTC
AGCTAGACGGTGTGGTTATGCGCGGACACCGCGGCTCGTACCAGATGATC
CTTATCCGTGACTGCAATGACTTCGAATTTTTCAGCGGCAATTCCCGCGG
GGCCATTCAGGGCTTTGGTTACGAATATCTGCAGAATGACACCTACGGCG
AGAGACTCTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGCATGGATTC
GCACTAATTGACTCGCCTTCCTACTACATTGTTTTCGATACGGTCACCAG
TGGGGAGGTATATAACATCTTGATCCGCGGCGTGACATCTGTGGGAGCGA
CAGATGCTATCGACGTATGGGGAGAGAACATGTGGTTCCATGACATTGAA
GTGAGCAACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCGCACAATTA
TCTGATTGAGAACATCTACTGCAATCTCAGTGGTGGGACCGCGATTGGAT
CCTTAGGCACGGGCACCAACATTTCCGACATCCACTACCGCAATCTCTAC
ATGAACCAAGCAGATGCGTGCTTTCTGAAATCCAACAATGGGGATGGGAT
TGTCAAAAATATCATCTGGGAGAATGTCATAGTCCACGGCGGTCCGTACC
CGCTGGCCATAGACGAGGCCTGGGGAGATGATCGAGGATCCGTAGGAGTT
CAAGTGTCCAACCTCACATTCCGAGTCCTATGCTGCGCCAACCATGGCAG
CTGAAACTGGCACGGAGAATCCGTGAGCGCCTCACGCCCAGTCATCCGCC
TACAATGTGACTCCGACGTCCCGTGCTACGATATTACCATCGAAAACGTG
AACCTGTGGGCCAACGACAGCAACTATGTGGTTTGGCAGTGCGAGAACGC
CTATGGAGATGGGGCCTGTCTCTCTAGTGCAGAGGGAACAAAAGATTTGG
AAACCTTTACCAGCAAACAAACTATAACTGCCACCCCGTATATGCGCGCC
AGCATTCTACCGTTGACTCTGTTCTTGGCCACTCTGGCCGGGGCGCAACT
CTCCGGCCCCGTTGGCCCGCTAGTGGACTACAGCACCAAAGCCAGAAACC
AGACCTGCAATATCATCGATTACGGGGCTGTCGCAGATGGTAAAACGGAT
ATATCGCAGGCTCTACTTGATGCCTGGGGAAACTGTTCCGTGGGGGGACT
GGTCTACATCCCACCCGGTAACTACTCGCTGGCCGAGGACATTGAGCTCA
AGCACGGCCAGTCCTCTGCAATTCAGCTAGACGGTGTGGTTATGCGCGGA
CACCGCGGCTCGTACCAGATGATCCTTATCCGTGACTGCAATGACTTCGA
ATTTTTCAGCGGCAATTCCCGCGGGGCCATTCAGGGCTTTGGTTACGAAT
ATCTGCAGAATGACACCTACGGCGAGAGACTCTTGCGCATCCAAGAGGTT
AACAATTTCTCGGTGCATGGATTCGCACTAATTGACTCGCCTTCCTACTA
CATTGTTTTCGATACGGTCACCAGTGGGGAGGTATATAACATCTTGATCC
GCGGCGTGACATCTGTGGGAGCGACAGATGCTATCGACGTATGGGGAGAG
AACATGTGGTTCCATGACATTGAAGTGAGCAACGGCGATGAATGTGTCAC
CGTCAAGTCTCCGGCGCACAATTATCTGATTGAGAACATCTACTGCAATC
TCAGTGGTGGGACCGCGATTGGATCCTTAGGCACGGGCACCAACATTTCC
GACATCCACTACCGCAATCTCTACATGAACCAAGCAGATGCGTGCTTTCT
GAAATCCAACAATGGGGATGGGATTGTCAAAAATATCATCTGGGAGAATG
TCATAGTCCACGGCGGTCCGTACCCGCTGGCCATAGACGAGGCCTGGGGA
GATGATCGAGGATCCGTAGGAGTTCAAGTGTCCAACCTCACATTCCGAGT
CCTATGCTGCGCCAACCATGGCAGCTGAAACTGGCACGGAGAATCCGTGA
GCGCCTCACGCCCAGTCATCCGCCTACAATGTGACTCCGACGTCCCGTGC
TACGATATTACCATCGAAAACGTGAACCTGTGGGCCAACGACAGCAACTA
TGTGGTTTGGCAGTGCGAGAACGCCTATGGAGATGGGGCCTGTCTCTCTA
GTGCAGAGGGAACAAAAGATTTGGAAACCTTTACCAGCAAACAAACTATA
ACTGCCACCCCGTATATGCGCGCCAGCATTCTACCGTTGACTCTGTTCTT
GGCCACTCTGGCCGGGGCGCAACTCTCCGGCCCCGTTGGCCCGCTAGTGG
ACTACAGCACCAAAGCCAGAAACCAGACCTGCAATATCATCGATTACGGG
GCTGTCGCAGATGGTAAAACGGATATATCGCAGGCTCTACTTGATGCCTG
GGGAAACTGTTCCGTGGGGGGACTGGTCTACATCCCACCCGGTAACTACT
CGCTGGCCGAGGACATTGAGCTCAAGCACGGCCAGTCCTCTGCAATTCAG
CTAGACGGTGTGGTTATGCGCGGACACCGCGGCTCGTACCAGATGATCCT
TATCCGTGACTGCAATGACTTCGAATTTTTCAGCGGCAATTCCCGCGGGG
CCATTCAGGGCTTTGGTTACGAATATCTGCAGAATGACACCTACGGCGAG
AGACTCTTGCGCATCCAAGAGGTTAACAATTTCTCGGTGCATGGATTCGC
ACTAATTGACTCGCCTTCCTACTACATTGTTTTCGATACGGTCACCAGTG
GGGAGGTATATAACATCTTGATCCGCGGCGTGACATCTGTGGGAGCGACA
GATGCTATCGACGTATGGGGAGAGAACATGTGGTTCCATGACATTGAAGT
GAGCAACGGCGATGAATGTGTCACCGTCAAGTCTCCGGCGCACAATTATC
TGATTGAGAACATCTACTGCAATCTCAGTGGTGGGACCGCGATTGGATCC
TTAGGCACGGGCACCAACATTTCCGACATCCACTACCGCAATCTCTACAT
GAACCAAGCAGATGCGTGCTTTCTGAAATCCAACAATGGGGATGGGATTG
TCAAAAATATCATCTGGGAGAATGTCATAGTCCACGGCGGTCCGTACCCG
CTGGCCATAGACGAGGCCTGGGGAGATGATCGAGGATCCGTAGGAGTTCA
AGTGTCCAACCTCACATTCCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_004123CBS51388_004123Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004123-T1CBS51388_004123-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004123-T1.cdsCBS51388_004123-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004123-T1.exon3CBS51388_004123-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_004123-T1.exon2CBS51388_004123-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_004123-T1.exon1CBS51388_004123-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefPFAM:PF12708
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An06supercontigAn06:519933..521260 -
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