You are here

Home

CBS51388_004155-T1, CBS51388_004155-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004155-T1
Unique NameCBS51388_004155-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An06:636122..637450+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004155-T1 ID=CBS51388_004155-T1|Name=CBS51388_004155-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1329bp|location=Sequence derived from alignment at An06:636122..637450+ (Aspergillus niger CBS 513.88)
ATGTACAATGCCCTCTCCGGCTTGGGAGGATCCGGTCAGGTCGACCCAAC
TGTAGCAGCCAATGCTACAGTTGCCCTAATGTCTGCCACTGCCGGAACCG
CTCTGTTCGTCGTGGGACCAATATTTGAGCGGGTAGGGCCTCGTGTTTGC
CTTCTCCTTGGCGGATGGACATATGCCCTGTATTCGGGTAGCTTGCTGAA
TTTCAACTGTAAGTTCTTGTTAGCGAGACAAAGAAACGGGGACATGATTG
ACCAAACGCAATTCTAAGATGACAAAAATGGAGCGTTTGTCATTGCGTCC
GGTGCTCTCCTGGGTGTAGGCGCCTCGTTCTTATGGGTATCCCAGGGTGC
AATTATGACAACCTACGTTCCCGAATCTCAGAAGGGGCGAGCAATCGCCG
TGTTTTGGATCATTTTCAACCTCGGCGGCGGAGTTGGCTCTCTCGCTAGC
TTTGGCCTCAACTTCCACTCCAAGACCAGCACTATATCGGATGCAACGTA
CATTGCTCTGCTTGTGATTATGCTGGTCGGGTGGGTGCTGGGACTTTTGA
TATGCACTCCATCAGCGGTACGAGTGAAAGGGATACATACAACTGCAAGT
GAGAAACCCAACTGGCGACAGACAGCACGACTTGCATTACGCACAGTATC
TGACTGGAGGGTTATCTGCATGTTGCCTTTGTTCTTCTCCGCGAACGTGC
CCTATTCATATCAGCAAAACGAGGTGAATGGTATGAACTTCAACATTCGA
ACTCGATCCTTGAATGGTGCACTATACTGGATGGCTCAGATGCTAGGTGG
CTTGATCATGGGCTGCTTGCTCGATATGCCATGGCTGACCCGCCGATGGC
GTGCTGTGGCGGGCTGGGTAACCCTGTTTGTAACTGGGATGGCTATCTGG
GGCGGTGGCTACAAATTTCAGCTGTGGTCTACTCATCGTATAGCACAAGG
ACTGAAACAAAACATTGACTATACGAATGGAAGTCTCTCAGCCGGCCCCA
TCATCTTGTATATCTGCTACGGAGCATATGATGCCCTTTGGCAATCTTTT
TGTTACTGGTTGATTGGTGCCCAGTCTAATTCTCCTGCTAGAACTGCTAT
AATGGTTGGTGCTTATAAGACCTTTCAGTCTACTGGAGGTGCCATGGCGT
GGAGATTGAATGCCTTGAGAAAGACGGCCATGACTCAGTTTGCTATGGAC
TGGGGACTTTGCATCGGTTCGCTACTGATTGTCATTCCTACCGTCTGGGC
CATTACCTCAACAAGTGTTGGCGAGGAAGACGTTGTTGCCGAAGTGGCGG
AGAAGGATGTGAAGCAACCGTTACCGTGA
back to top

Coding sequence (CDS) from alignment at An06:636122..637450+

>CBS51388_004155-T1 ID=CBS51388_004155-T1|Name=CBS51388_004155-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2538bp|location=Sequence derived from alignment at An06:636122..637450+ (Aspergillus niger CBS 513.88)
ATGTACAATGCCCTCTCCGGCTTGGGAGGATCCGGTCAGGTCGACCCAAC
TGTAGCAGCCAATGCTACAGTTGCCCTAATGTCTGCCACTGCCGGAACCG
CTCTGTTCGTCGTGGGACCAATATTTGAGCGGGTAGGGCCTCGTGTTTGC
CTTCTCCTTGGCGGATGGACATATGCCCTGTATTCGGGTAGCTTGCTGAA
TTTCAACTATGACAAAAATGGAGCGTTTGTCATTGCGTCCGGTGCTCTCC
TGGGTGTAGGCGCCTCGTTCTTATGGGTATCCCAGGGTGCAATTATGACA
ACCTACGTTCCCGAATCTCAGAAGGGGCGAGCAATCGCCGTGTTTTGGAT
CATTTTCAACCTCGGCGGCGGAGTTGGCTCTCTCGCTAGCTTTGGCCTCA
ACTTCCACTCCAAGACCAGCACTATATCGGATGCAACGTACATTGCTCTG
CTTGTGATTATGCTGGTCGGGTGGGTGCTGGGACTTTTGATATGCACTCC
ATCAGCGGTACGAGTGAAAGGGATACATACAACTGCAAGTGAGAAACCCA
ACTGGCGACAGACAGCACGACTTGCATTACGCACAGTATCTGACTGGAGG
GTTATCTGCATGTTGCCTTTGTTCTTCTCCGCGAACGTGCCCTATTCATA
TCAGCAAAACGAGGTGAATGGTATGAACTTCAACATTCGAACTCGATCCT
TGAATGGTGCACTATACTGGATGGCTCAGATGCTAGGTGGCTTGATCATG
GGCTGCTTGCTCGATATGCCATGGCTGACCCGCCGATGGCGTGCTGTGGC
GGGCTGGGTAACCCTGTTTGTAACTGGGATGGCTATCTGGGGCGGTGGCT
ACAAATTTCAGCTGTGGTCTACTCATCGTATAGCACAAGGACTGAAACAA
AACATTGACTATACGAATGGAAGTCTCTCAGCCGGCCCCATCATCTTGTA
TATCTGCTACGGAGCATATGATGCCCTTTGGCAATCTTTTTGTTACTGGT
TGATTGGTGCCCAGTCTAATTCTCCTGCTAGAACTGCTATAATGGTTGGT
GCTTATAAGACCTTTCAGTCTACTGGAGGTGCCATGGCGTGGAGATTGAA
TGCCTTGAGAAAGACGGCCATGACTCAGTTTGCTATGGACTGGGGACTTT
GCATCGGTTCGCTACTGATTGTCATTCCTACCGTCTGGGCCATTACCTCA
ACAAGTGTTGGCGAGGAAGACGTTGTTGCCGAAGTGGCGGAGAAGGATGT
GAAGCAACCGTTACCGTGAATGTACAATGCCCTCTCCGGCTTGGGAGGAT
CCGGTCAGGTCGACCCAACTGTAGCAGCCAATGCTACAGTTGCCCTAATG
TCTGCCACTGCCGGAACCGCTCTGTTCGTCGTGGGACCAATATTTGAGCG
GGTAGGGCCTCGTGTTTGCCTTCTCCTTGGCGGATGGACATATGCCCTGT
ATTCGGGTAGCTTGCTGAATTTCAACTATGACAAAAATGGAGCGTTTGTC
ATTGCGTCCGGTGCTCTCCTGGGTGTAGGCGCCTCGTTCTTATGGGTATC
CCAGGGTGCAATTATGACAACCTACGTTCCCGAATCTCAGAAGGGGCGAG
CAATCGCCGTGTTTTGGATCATTTTCAACCTCGGCGGCGGAGTTGGCTCT
CTCGCTAGCTTTGGCCTCAACTTCCACTCCAAGACCAGCACTATATCGGA
TGCAACGTACATTGCTCTGCTTGTGATTATGCTGGTCGGGTGGGTGCTGG
GACTTTTGATATGCACTCCATCAGCGGTACGAGTGAAAGGGATACATACA
ACTGCAAGTGAGAAACCCAACTGGCGACAGACAGCACGACTTGCATTACG
CACAGTATCTGACTGGAGGGTTATCTGCATGTTGCCTTTGTTCTTCTCCG
CGAACGTGCCCTATTCATATCAGCAAAACGAGGTGAATGGTATGAACTTC
AACATTCGAACTCGATCCTTGAATGGTGCACTATACTGGATGGCTCAGAT
GCTAGGTGGCTTGATCATGGGCTGCTTGCTCGATATGCCATGGCTGACCC
GCCGATGGCGTGCTGTGGCGGGCTGGGTAACCCTGTTTGTAACTGGGATG
GCTATCTGGGGCGGTGGCTACAAATTTCAGCTGTGGTCTACTCATCGTAT
AGCACAAGGACTGAAACAAAACATTGACTATACGAATGGAAGTCTCTCAG
CCGGCCCCATCATCTTGTATATCTGCTACGGAGCATATGATGCCCTTTGG
CAATCTTTTTGTTACTGGTTGATTGGTGCCCAGTCTAATTCTCCTGCTAG
AACTGCTATAATGGTTGGTGCTTATAAGACCTTTCAGTCTACTGGAGGTG
CCATGGCGTGGAGATTGAATGCCTTGAGAAAGACGGCCATGACTCAGTTT
GCTATGGACTGGGGACTTTGCATCGGTTCGCTACTGATTGTCATTCCTAC
CGTCTGGGCCATTACCTCAACAAGTGTTGGCGAGGAAGACGTTGTTGCCG
AAGTGGCGGAGAAGGATGTGAAGCAACCGTTACCGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_004155CBS51388_004155Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004155-T1.exon1CBS51388_004155-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_004155-T1.exon2CBS51388_004155-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004155-T1.cdsCBS51388_004155-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004155-T1CBS51388_004155-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR011701
DBxrefPFAM:PF05978
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An06supercontigAn06:636122..637450 +
Powered by Drupal