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CBS51388_004287-T1, CBS51388_004287-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004287-T1
Unique NameCBS51388_004287-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An07:303922..304539+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004287-T1 ID=CBS51388_004287-T1|Name=CBS51388_004287-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=618bp|location=Sequence derived from alignment at An07:303922..304539+ (Aspergillus niger CBS 513.88)
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTGTACGTTTTGACT
TGCTCTGAAATGGCTAATGTGTATCTAACACACTTGTGCGCAGTTGACTT
CGAGTCGTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTG
GCGAGCCCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTG
ACTGGGTTTATCGGTGTGGGACAGCTCCGATACAGTATGTGAAGCAGGAT
GGAGTTTATTGGGTTGATACTGATGATGGCTACAGTCCTGACGAATCTCG
GTGAGAAGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGAC
ACCAGCTCCGGCGAGATCAACTACACCGGTATGTTACACCAACTGAAAGT
TCACCATGCCTTTGTGTTGGGTCAGGCTAACAGCAGCAGACCTCGTCCGC
ACCATCCTGGCCAACTAA
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Coding sequence (CDS) from alignment at An07:303922..304539+

>CBS51388_004287-T1 ID=CBS51388_004287-T1|Name=CBS51388_004287-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1800bp|location=Sequence derived from alignment at An07:303922..304539+ (Aspergillus niger CBS 513.88)
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCTTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CDC4CBS51388_004287Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004287-T1.exon1CBS51388_004287-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_004287-T1.exon2CBS51388_004287-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_004287-T1.exon3CBS51388_004287-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_004287-T1.exon4CBS51388_004287-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004287-T1.cdsCBS51388_004287-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004287-T1CBS51388_004287-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265591
DBxrefInterPro:IPR011992
DBxrefInterPro:IPR002048
DBxrefPFAM:PF13833
DBxrefPFAM:PF13499
ProductSCF ubiquitin ligase complex subunit cdc4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An07supercontigAn07:303922..304539 +
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