You are here

Home

CBS51388_004379-T1, CBS51388_004379-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004379-T1
Unique NameCBS51388_004379-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An07:572204..573355-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004379-T1 ID=CBS51388_004379-T1|Name=CBS51388_004379-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1152bp|location=Sequence derived from alignment at An07:572204..573355- (Aspergillus niger CBS 513.88)
ATGGCCCCTGCTCCGCCCGCTAATCTGCCTCTGCCTGAGAGACTCAAGGC
TCTGGCTCAAACACTGCAGTATGTGTCGCATGTCCCGGAACTGACAACTG
GTACTGACGAGGTCTCTTCTTCTACTTAGATTTGCTTGGTTCGCTGGGTA
GGTTATAGCTCCGCCATGTTTCAGCCTGCCTGTTCTGTTTGACGACGTTT
CATCATACAATGAAATCACTTGTCCTGGGCCTATCCAGCAGGACTTGCCC
ACTGGACCATCCCTCGCCAGCTCTCGCTTTGAACGGTCGGACCGAGCATA
TTCGCTAACGCACCATAGGCATGTGACGCTGCTCCTTTCGGTCTTCCGCT
ATGTCCTGTCCTACATTACGTTCAACTACTACTCCTCGTCGGCGCAGGTA
GCTTACCGCCTTGCGTTTGTTTCCGCTGCCGCGACATACGGAATTGTGGT
CTACAAGGGACACATTGCCCGTGGCCGTCTCCAGGGCAGTGTTCCCAACA
TTGCGCTGAAGCTGGCTGGTGATGAAAATGTCCAGTACCTCGGTAAGTGA
TGGTGTGATCGAGTAGCGAAGACAACGATACTGATAAGCAGTAACCAGGT
ATGGCACTGGTCTGGCTCTACTCGCGCCAGATCCCGTTGGCCCTGCTTCC
TTTCAGCGTCTACTCCATCTTCCATGTTGCGACTTACACTCGTGCCCACC
TGATTCCCACCATCCAGGGCCCCGCTCCTGGTGCTGCCCCCGGCTCTCCT
GCTTCTCCTAGCGGTCCCAAGCCCGCCGCCAGACCTTCTCCCTTGGCCGA
TACCATTGGACGGTTTGTCAAGCAGTACTATGACGCCAGCATGCACCTGG
TCGCTCAGCTGGAGATGTCTCTTCTCCTCCGCTTGGCCGTGGGCATCCTC
ACCTTCTCCAAGGGTAGCTTTGTGCTCTTCTTCTTCTACCTGGCCTTCTT
CCGCGCCAGATACTCCCAGAGCTCCTTTGTCCAGCAGGCGGTCCGCCACT
TCATCGCCAGAGTTGATGCTTCGGTTTCCCACCAGAGCACCCCCCCTGCG
GTTCGCCAGGGATGGGAGTCCTTCAAGGCTGCCGTGGGCCAGGCCTACGA
GGCTACGGATCTCAACCGTATGAGCTCCGGTGCTGCGAAGAAGCCCCAAT
AG
back to top

Coding sequence (CDS) from alignment at An07:572204..573355-

>CBS51388_004379-T1 ID=CBS51388_004379-T1|Name=CBS51388_004379-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3456bp|location=Sequence derived from alignment at An07:572204..573355- (Aspergillus niger CBS 513.88)
GTATGGCACTGGTCTGGCTCTACTCGCGCCAGATCCCGTTGGCCCTGCTT
CCTTTCAGCGTCTACTCCATCTTCCATGTTGCGACTTACACTCGTGCCCA
CCTGATTCCCACCATCCAGGGCCCCGCTCCTGGTGCTGCCCCCGGCTCTC
CTGCTTCTCCTAGCGGTCCCAAGCCCGCCGCCAGACCTTCTCCCTTGGCC
GATACCATTGGACGGTTTGTCAAGCAGTACTATGACGCCAGCATGCACCT
GGTCGCTCAGCTGGAGATGTCTCTTCTCCTCCGCTTGGCCGTGGGCATCC
TCACCTTCTCCAAGGGTAGCTTTGTGCTCTTCTTCTTCTACCTGGCCTTC
TTCCGCGCCAGATACTCCCAGAGCTCCTTTGTCCAGCAGGCGGTCCGCCA
CTTCATCGCCAGAGTTGATGCTTCGGTTTCCCACCAGAGCACCCCCCCTG
CGGTTCGCCAGGGATGGGAGTCCTTCAAGGCTGCCGTGGGCCAGGCCTAC
GAGGCTACGGATCTCAACCGTATGAGCTCCGGTGCTGCGAAGAAGCCCCA
ATAGGCATGTGACGCTGCTCCTTTCGGTCTTCCGCTATGTCCTGTCCTAC
ATTACGTTCAACTACTACTCCTCGTCGGCGCAGGTAGCTTACCGCCTTGC
GTTTGTTTCCGCTGCCGCGACATACGGAATTGTGGTCTACAAGGGACACA
TTGCCCGTGGCCGTCTCCAGGGCAGTGTTCCCAACATTGCGCTGAAGCTG
GCTGGTGATGAAAATGTCCAGTACCTCGATTTGCTTGGTTCGCTGGATGG
CCCCTGCTCCGCCCGCTAATCTGCCTCTGCCTGAGAGACTCAAGGCTCTG
GCTCAAACACTGCAGTATGGCACTGGTCTGGCTCTACTCGCGCCAGATCC
CGTTGGCCCTGCTTCCTTTCAGCGTCTACTCCATCTTCCATGTTGCGACT
TACACTCGTGCCCACCTGATTCCCACCATCCAGGGCCCCGCTCCTGGTGC
TGCCCCCGGCTCTCCTGCTTCTCCTAGCGGTCCCAAGCCCGCCGCCAGAC
CTTCTCCCTTGGCCGATACCATTGGACGGTTTGTCAAGCAGTACTATGAC
GCCAGCATGCACCTGGTCGCTCAGCTGGAGATGTCTCTTCTCCTCCGCTT
GGCCGTGGGCATCCTCACCTTCTCCAAGGGTAGCTTTGTGCTCTTCTTCT
TCTACCTGGCCTTCTTCCGCGCCAGATACTCCCAGAGCTCCTTTGTCCAG
CAGGCGGTCCGCCACTTCATCGCCAGAGTTGATGCTTCGGTTTCCCACCA
GAGCACCCCCCCTGCGGTTCGCCAGGGATGGGAGTCCTTCAAGGCTGCCG
TGGGCCAGGCCTACGAGGCTACGGATCTCAACCGTATGAGCTCCGGTGCT
GCGAAGAAGCCCCAATAGGCATGTGACGCTGCTCCTTTCGGTCTTCCGCT
ATGTCCTGTCCTACATTACGTTCAACTACTACTCCTCGTCGGCGCAGGTA
GCTTACCGCCTTGCGTTTGTTTCCGCTGCCGCGACATACGGAATTGTGGT
CTACAAGGGACACATTGCCCGTGGCCGTCTCCAGGGCAGTGTTCCCAACA
TTGCGCTGAAGCTGGCTGGTGATGAAAATGTCCAGTACCTCGATTTGCTT
GGTTCGCTGGATGGCCCCTGCTCCGCCCGCTAATCTGCCTCTGCCTGAGA
GACTCAAGGCTCTGGCTCAAACACTGCAGTATGGCACTGGTCTGGCTCTA
CTCGCGCCAGATCCCGTTGGCCCTGCTTCCTTTCAGCGTCTACTCCATCT
TCCATGTTGCGACTTACACTCGTGCCCACCTGATTCCCACCATCCAGGGC
CCCGCTCCTGGTGCTGCCCCCGGCTCTCCTGCTTCTCCTAGCGGTCCCAA
GCCCGCCGCCAGACCTTCTCCCTTGGCCGATACCATTGGACGGTTTGTCA
AGCAGTACTATGACGCCAGCATGCACCTGGTCGCTCAGCTGGAGATGTCT
CTTCTCCTCCGCTTGGCCGTGGGCATCCTCACCTTCTCCAAGGGTAGCTT
TGTGCTCTTCTTCTTCTACCTGGCCTTCTTCCGCGCCAGATACTCCCAGA
GCTCCTTTGTCCAGCAGGCGGTCCGCCACTTCATCGCCAGAGTTGATGCT
TCGGTTTCCCACCAGAGCACCCCCCCTGCGGTTCGCCAGGGATGGGAGTC
CTTCAAGGCTGCCGTGGGCCAGGCCTACGAGGCTACGGATCTCAACCGTA
TGAGCTCCGGTGCTGCGAAGAAGCCCCAATAGGCATGTGACGCTGCTCCT
TTCGGTCTTCCGCTATGTCCTGTCCTACATTACGTTCAACTACTACTCCT
CGTCGGCGCAGGTAGCTTACCGCCTTGCGTTTGTTTCCGCTGCCGCGACA
TACGGAATTGTGGTCTACAAGGGACACATTGCCCGTGGCCGTCTCCAGGG
CAGTGTTCCCAACATTGCGCTGAAGCTGGCTGGTGATGAAAATGTCCAGT
ACCTCGATTTGCTTGGTTCGCTGGATGGCCCCTGCTCCGCCCGCTAATCT
GCCTCTGCCTGAGAGACTCAAGGCTCTGGCTCAAACACTGCAGTATGGCA
CTGGTCTGGCTCTACTCGCGCCAGATCCCGTTGGCCCTGCTTCCTTTCAG
CGTCTACTCCATCTTCCATGTTGCGACTTACACTCGTGCCCACCTGATTC
CCACCATCCAGGGCCCCGCTCCTGGTGCTGCCCCCGGCTCTCCTGCTTCT
CCTAGCGGTCCCAAGCCCGCCGCCAGACCTTCTCCCTTGGCCGATACCAT
TGGACGGTTTGTCAAGCAGTACTATGACGCCAGCATGCACCTGGTCGCTC
AGCTGGAGATGTCTCTTCTCCTCCGCTTGGCCGTGGGCATCCTCACCTTC
TCCAAGGGTAGCTTTGTGCTCTTCTTCTTCTACCTGGCCTTCTTCCGCGC
CAGATACTCCCAGAGCTCCTTTGTCCAGCAGGCGGTCCGCCACTTCATCG
CCAGAGTTGATGCTTCGGTTTCCCACCAGAGCACCCCCCCTGCGGTTCGC
CAGGGATGGGAGTCCTTCAAGGCTGCCGTGGGCCAGGCCTACGAGGCTAC
GGATCTCAACCGTATGAGCTCCGGTGCTGCGAAGAAGCCCCAATAGGCAT
GTGACGCTGCTCCTTTCGGTCTTCCGCTATGTCCTGTCCTACATTACGTT
CAACTACTACTCCTCGTCGGCGCAGGTAGCTTACCGCCTTGCGTTTGTTT
CCGCTGCCGCGACATACGGAATTGTGGTCTACAAGGGACACATTGCCCGT
GGCCGTCTCCAGGGCAGTGTTCCCAACATTGCGCTGAAGCTGGCTGGTGA
TGAAAATGTCCAGTACCTCGATTTGCTTGGTTCGCTGGATGGCCCCTGCT
CCGCCCGCTAATCTGCCTCTGCCTGAGAGACTCAAGGCTCTGGCTCAAAC
ACTGCA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_004379CBS51388_004379Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004379-T1CBS51388_004379-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004379-T1.cdsCBS51388_004379-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004379-T1.exon4CBS51388_004379-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_004379-T1.exon3CBS51388_004379-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_004379-T1.exon2CBS51388_004379-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_004379-T1.exon1CBS51388_004379-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR005344
DBxrefPFAM:PF03661
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An07supercontigAn07:572204..573355 -
Powered by Drupal