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CBS51388_004387-T1, CBS51388_004387-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004387-T1
Unique NameCBS51388_004387-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An07:611545..612627+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004387-T1 ID=CBS51388_004387-T1|Name=CBS51388_004387-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1083bp|location=Sequence derived from alignment at An07:611545..612627+ (Aspergillus niger CBS 513.88)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAAGATTCCCCTCTCAATTCTCAAATTGCGGGGATGGGAAGGATACT
AATATGTGGATGAATAGGTAACAAGATCCTCCGTATCTTGAAGTCCAACG
GTACGACATCACCGACATGTTCCCTTTCACCAGTCGCACCAGTTATATGA
GCATGTTGTGGATGTGAATATGGCAGCGGAAATGGAACGGGCGCGAGCAG
AGAAGCAGCTAGGACCCGGATTGGAATATATCCGGCGATTCGATTTCAGC
CAGGTTACGGGTTGATTGATGGACAACGATACGATATATTCTGCACGGAA
GTGAAGAAGAAGAAAGAGAACGAGGTTGAAACATACCCGGAATCGTTCTC
GACTCTGTATCGACATGGACACTCGCAAACCTACAGCCAATCGCAATCGC
AGCAATCCCGGCGCTCTCTGCCTCCCACCATCTCTACACCGCACACCCAC
AACATGTCCATAAAACTGGAGGGCACCAGAAGCAAAACATCAACACCAAC
TCGCAGAAATGCAGTTGGATGTTGGAAGTTTCTTTTGCGTGATCCCGTAT
GCCTCTGCTTGGTCAAACCACAGGCTGACAGAGTGATCTTTTAAACAGGC
CTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGTATG
CCGTTCCCCATTTATCTGAAAACACGATGGTAGATTGAATACTAACAAAC
TGGTATTAGGCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGA
CAAGGACAGCAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTC
TGTCTCGTTACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTAC
GAGTCCGCCACTGCTTCCACCCTCGTTGCTTAA
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Coding sequence (CDS) from alignment at An07:611545..612627+

>CBS51388_004387-T1 ID=CBS51388_004387-T1|Name=CBS51388_004387-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1824bp|location=Sequence derived from alignment at An07:611545..612627+ (Aspergillus niger CBS 513.88)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCCCCGAGC
TCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTCCGCAAG
CACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCTGATTCT
CATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCGTCGGTG
TCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACCCTCGTT
GCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGC
TCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGC
AGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCC
CAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGAC
TGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCC
CCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTC
CGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCT
GATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCG
TCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACC
CTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTC
CTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCA
CCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACC
CCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGT
CAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCC
TTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTC
GCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTT
CCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACA
AGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCT
TCCACCCTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCAT
TTCGTCCTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGG
CTTCCACCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGT
GCTACCCCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGC
CCAGGTCAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCA
ACGGCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAG
GCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAG
CAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTT
ACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCC
ACTGCTTCCACCCTCGTTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS13CBS51388_004387Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004387-T1.exon1CBS51388_004387-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_004387-T1.exon2CBS51388_004387-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_004387-T1.exon3CBS51388_004387-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_004387-T1.exon4CBS51388_004387-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004387-T1.cdsCBS51388_004387-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004387-T1CBS51388_004387-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926514P
DBxrefInterPro:IPR009068
DBxrefInterPro:IPR023029
DBxrefInterPro:IPR000589
DBxrefInterPro:IPR012606
DBxrefPFAM:PF00312
DBxrefPFAM:PF08069
Productribosomal 40S subunit protein S13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An07supercontigAn07:611545..612627 +
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