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Sequences
The following sequences are available for this feature:
mRNA from alignment at An07:1956291..1957280- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_004810-T1 ID=CBS51388_004810-T1|Name=CBS51388_004810-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=990bp|location=Sequence derived from alignment at An07:1956291..1957280- (Aspergillus niger CBS 513.88)
ATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCC
TCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCA
CCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAG
ACCGCCATTGAGGGCTCCTACATCGGTATGCACGACCTATGTTGAAATTT
TATTTGCGGCGTTATCGACTTCCGATCATGCGGGACCGGGACTGGGAATC
TTTTGGAGGCTATGGGGAGATGAGAATATGCCGCATGGAGAAGAGAGAAA
TCACCTGGAAAGCGCCAGCATGAGTCTACGATAAATGCAACTATCTTCTG
CAAAGGATCGGGATGGAATGCGACAAGAGAAGGAATCAAAGATCAGACCT
GGAAAAAGCGCTTGGCGACAGATTTGCGGAACCCGGTTATTCTCATCTCT
CAAAGGCTCCGGAGAAGTCCAGTCATGTCGTTTGAAATCTCCAGGTGGGA
CATATCACTGATATCGAACAGACAAGAAGTGCCCCTTCACCGGTCTGGTT
TCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCA
CCGTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACA
ACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCT
TTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCT
GAGCAAGACTGTACGTCAAACTTTCCTCGGGATATCTTCTATGGCTACTG
GTGGCAAATGCGTTCCTTTCCTTATACGCCTGAAAGGATACGGATTATGT
CCAGCGCTATTGAAGATATTCTACATGGGTCGCAAAATTATATACGTCAG
ATGCGCTAACTTACTATTCAGGTCCGCTTCAACGTCCTCCGTGTCCTGCC
CCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAA back to topCoding sequence (CDS) from alignment at An07:1956291..1957280- >CBS51388_004810-T1 ID=CBS51388_004810-T1|Name=CBS51388_004810-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1449bp|location=Sequence derived from alignment at An07:1956291..1957280- (Aspergillus niger CBS 513.88)
GTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAA
GGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCTTCACCGGTCTGGTTTC
CATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCACC
GTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACAAC
CGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCTTT
CCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGA
GCAAGACTATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAG
AAGCAGCCTCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAA
GGTTGGCACCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTA
CCCCCAAGACCGCCATTGAGGGCTCCTACATCGGTCCGCTTCAACGTCCT
CCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCT
AAACAAGAAGTGCCCCTTCACCGGTCTGGTTTCCATCCGTGGCCGTATCC
TGACCGGCCGTGTCGTCTCCACCAAGATGCACCGTACCATCGTCATCCGC
CGTGAATACCTCCACTACGTCCCCAAGTACAACCGTTACGAGAAGAGACA
CAAGAACCTTGCCGCTCACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTG
ACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGAGCAAGACTATGGCGACC
GAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCCTCACATCTT
CGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCC
GTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAGACCGCCATT
GAGGGCTCCTACATCGGTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTA
CCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCT
TCACCGGTCTGGTTTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTC
TCCACCAAGATGCACCGTACCATCGTCATCCGCCGTGAATACCTCCACTA
CGTCCCCAAGTACAACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTC
ACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGC
CAGTGCCGCCCCCTGAGCAAGACTATGGCGACCGAGTTGACCGTCCAGTC
GGAACGTGCGTTCCAGAAGCAGCCTCACATCTTCGTCAACCCCAAGGCTC
AGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCCGTTGGTACAAGGATGTC
GGTCTGGGTTTCCGTACCCCCAAGACCGCCATTGAGGGCTCCTACATCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092653NM |
| DBxref | InterPro:IPR012340 |
| DBxref | InterPro:IPR019979 |
| DBxref | InterPro:IPR028333 |
| DBxref | InterPro:IPR032440 |
| DBxref | InterPro:IPR000266 |
| DBxref | PFAM:PF16205 |
| DBxref | PFAM:PF00366 |
| Product | ribosomal 40S subunit protein S11A |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An07 | supercontig | An07:1956291..1957280 - |
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