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Sequences
The following sequences are available for this feature:
mRNA from alignment at An08:441669..443757+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_005105-T1 ID=CBS51388_005105-T1|Name=CBS51388_005105-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2089bp|location=Sequence derived from alignment at An08:441669..443757+ (Aspergillus niger CBS 513.88)
ATGGAGTCGTCACGCGGCCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCC
AGTCCAGATCTCGGCGGAGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGG
AGCCCGCATTGCAGGCGCCGACGCAGCGCTTTGCCGACCTGGAAGAACTG
CACGAATACCAGGGCCGCAAGCGAAAAGAGTTCGAAGACTATGTGCGTCG
GAACCGAATTAACATGAACAACTGGATGCGCTATGCGGCATGGGAGCTGG
AGCAAAAGGAGTTCCGCCGGGCGCGTTCAATCTTTGAACGGGCGCTGGAC
GTCAGCCCGACCTCGGTGGTTCTGTGGATTCGGTACATCGAGTCGGAGAT
GCGGAATCGCAACATCAATCATGCCAGGAACTTGCTCGACCGTGCGGTGA
CGATCTTGCCTCGGGTGGATAAGCTGTGGTACAAGTATGTCTACATGGAG
GAGACACTGGGCAACATTGCGGGTACACGACAGGTCTTTGAGCGGTGGAT
GTCTTGGGAGCCGGAAGAGGGAGCTTGGAGCGCCTATATCAAGCTGGAAA
AGCGGTACAATGAGTTCGAGAGGGCGCGCGCGATCTTCCAGCGGTTCACC
ATTGTTCACCCTGAACCACGCAATTGGATCAAGTGGGCTCGGTTTGAAGA
GGAGTATGGAACGAGCGATCTCGTGCGGGAGGTGTATGGAATGGCGATTG
AGACTCTGGGAGAGGATTTCATGGACGAGAAGCTCTTCATCGGCTATGCC
AAGTTCGAGGCGAAGTTGAAGGAGTACGAACGTGCCCGGGCGATTTACAA
GTATGCCTTAGACCGACTTCCTCGCTCAAAGTCCACGGCCCTTCACAAGT
CCTATACAACATTCGAGAAACAATATGGTGACCGGGAAGGCGTTGAGGAT
GTTATTCTCTCAAAACGCAGAGTCCAGTACGAGGAGCAACTGAAAGAGAA
CTCGCGGAACTACGACATATGGTTCGACTTTGCCCGGCTCGAGGAAACCT
CGGGTGACCCCGACCGAGTACGCGACATCTACGAACGCGCAATCGCTCAG
ATACCACCATCGCAGGAGAAGCGGCACTGGAGACGGTATATCTACCTGTG
GGTATTCTACGCCATTTGGGAGGAAATGGAAGCCAAGGACGCCGAGCGTG
CGCGCCAAATCTACAACGAGTGTCTCAAGTTGATTCCCCACAAAAAGTTC
ACCTTTGCCAAGATCTGGCTCCTGAAGGCGCAGTTTGAGATCCGTCAGAT
GAATCTCCAAGCCGCTCGTAAGACGCTTGGCCAGGCCATCGGCATGTGCC
CGAAGGATAAACTCTTCCGGGGATACATTGATCTAGAGCGCCAGCTGTTC
GAGTTCGTGCGGTGCCGGACACTGTTCGAAAAGCAGATCGAGTGGAATCC
TTCCAACAGCCAGTCATGGATCAAGTATGCCGAATTGGAGCGCGGGCTGG
ACGACACCGACCGTGCACGAGCCATCTACGAGCTTGGAATTGACCAGCCG
ACACTCGATATGCCCGAGTTGGTGTGGAAGTCGTACATTGACTTTGAGGA
GTACGAAGGCGAATACGACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGG
AGAAGACAGATCACGTCAAGGTGTGGATTAACTACGCCCGCTTCGAGATC
AACGTCCCCGACGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCC
GATCAGCGAGGATGCCAAGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTC
ACAAGGTGTTCAAGGAGAAGGAGCTCAAGGAAGAGGTAAGCTGTACTCGA
CATTCCTTTTCTAACATATCCCTGACTAACCATGACACAGCGCGTGGAAT
TGCTCAATGCTTGGCGGTCATTCGAGCACACGCACGGTTCACCAGAAGAC
ATCGACAAGATCGAGAAACAGATGCCCCGGCGAGTCAAGAAGCGGCGCAA
GTTGGACGACGATCGGTACGAGGAGTACATGGATTACGTATTCCCAGCAG
ACGACCAGTCGGCGGCGAATCTGTCGAAGCTGCTGCAAAGAGCTCACCAA
TGGAAGCAGCAACAGCAACAACAGGGGGATGGAGCATAG back to topCoding sequence (CDS) from alignment at An08:441669..443757+ >CBS51388_005105-T1 ID=CBS51388_005105-T1|Name=CBS51388_005105-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4068bp|location=Sequence derived from alignment at An08:441669..443757+ (Aspergillus niger CBS 513.88)
ATGGAGTCGTCACGCGGCCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCC
AGTCCAGATCTCGGCGGAGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGG
AGCCCGCATTGCAGGCGCCGACGCAGCGCTTTGCCGACCTGGAAGAACTG
CACGAATACCAGGGCCGCAAGCGAAAAGAGTTCGAAGACTATGTGCGTCG
GAACCGAATTAACATGAACAACTGGATGCGCTATGCGGCATGGGAGCTGG
AGCAAAAGGAGTTCCGCCGGGCGCGTTCAATCTTTGAACGGGCGCTGGAC
GTCAGCCCGACCTCGGTGGTTCTGTGGATTCGGTACATCGAGTCGGAGAT
GCGGAATCGCAACATCAATCATGCCAGGAACTTGCTCGACCGTGCGGTGA
CGATCTTGCCTCGGGTGGATAAGCTGTGGTACAAGTATGTCTACATGGAG
GAGACACTGGGCAACATTGCGGGTACACGACAGGTCTTTGAGCGGTGGAT
GTCTTGGGAGCCGGAAGAGGGAGCTTGGAGCGCCTATATCAAGCTGGAAA
AGCGGTACAATGAGTTCGAGAGGGCGCGCGCGATCTTCCAGCGGTTCACC
ATTGTTCACCCTGAACCACGCAATTGGATCAAGTGGGCTCGGTTTGAAGA
GGAGTATGGAACGAGCGATCTCGTGCGGGAGGTGTATGGAATGGCGATTG
AGACTCTGGGAGAGGATTTCATGGACGAGAAGCTCTTCATCGGCTATGCC
AAGTTCGAGGCGAAGTTGAAGGAGTACGAACGTGCCCGGGCGATTTACAA
GTATGCCTTAGACCGACTTCCTCGCTCAAAGTCCACGGCCCTTCACAAGT
CCTATACAACATTCGAGAAACAATATGGTGACCGGGAAGGCGTTGAGGAT
GTTATTCTCTCAAAACGCAGAGTCCAGTACGAGGAGCAACTGAAAGAGAA
CTCGCGGAACTACGACATATGGTTCGACTTTGCCCGGCTCGAGGAAACCT
CGGGTGACCCCGACCGAGTACGCGACATCTACGAACGCGCAATCGCTCAG
ATACCACCATCGCAGGAGAAGCGGCACTGGAGACGGTATATCTACCTGTG
GGTATTCTACGCCATTTGGGAGGAAATGGAAGCCAAGGACGCCGAGCGTG
CGCGCCAAATCTACAACGAGTGTCTCAAGTTGATTCCCCACAAAAAGTTC
ACCTTTGCCAAGATCTGGCTCCTGAAGGCGCAGTTTGAGATCCGTCAGAT
GAATCTCCAAGCCGCTCGTAAGACGCTTGGCCAGGCCATCGGCATGTGCC
CGAAGGATAAACTCTTCCGGGGATACATTGATCTAGAGCGCCAGCTGTTC
GAGTTCGTGCGGTGCCGGACACTGTTCGAAAAGCAGATCGAGTGGAATCC
TTCCAACAGCCAGTCATGGATCAAGTATGCCGAATTGGAGCGCGGGCTGG
ACGACACCGACCGTGCACGAGCCATCTACGAGCTTGGAATTGACCAGCCG
ACACTCGATATGCCCGAGTTGGTGTGGAAGTCGTACATTGACTTTGAGGA
GTACGAAGGCGAATACGACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGG
AGAAGACAGATCACGTCAAGGTGTGGATTAACTACGCCCGCTTCGAGATC
AACGTCCCCGACGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCC
GATCAGCGAGGATGCCAAGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTC
ACAAGGTGTTCAAGGAGAAGGAGCTCAAGGAAGAGCGCGTGGAATTGCTC
AATGCTTGGCGGTCATTCGAGCACACGCACGGTTCACCAGAAGACATCGA
CAAGATCGAGAAACAGATGCCCCGGCGAGTCAAGAAGCGGCGCAAGTTGG
ACGACGATCGGTACGAGGAGTACATGGATTACGTATTCCCAGCAGACGAC
CAGTCGGCGGCGAATCTGTCGAAGCTGCTGCAAAGAGCTCACCAATGGAA
GCAGCAACAGCAACAACAGGGGGATGGAGCATAGATGGAGTCGTCACGCG
GCCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCCAGTCCAGATCTCGGCG
GAGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGGAGCCCGCATTGCAGGC
GCCGACGCAGCGCTTTGCCGACCTGGAAGAACTGCACGAATACCAGGGCC
GCAAGCGAAAAGAGTTCGAAGACTATGTGCGTCGGAACCGAATTAACATG
AACAACTGGATGCGCTATGCGGCATGGGAGCTGGAGCAAAAGGAGTTCCG
CCGGGCGCGTTCAATCTTTGAACGGGCGCTGGACGTCAGCCCGACCTCGG
TGGTTCTGTGGATTCGGTACATCGAGTCGGAGATGCGGAATCGCAACATC
AATCATGCCAGGAACTTGCTCGACCGTGCGGTGACGATCTTGCCTCGGGT
GGATAAGCTGTGGTACAAGTATGTCTACATGGAGGAGACACTGGGCAACA
TTGCGGGTACACGACAGGTCTTTGAGCGGTGGATGTCTTGGGAGCCGGAA
GAGGGAGCTTGGAGCGCCTATATCAAGCTGGAAAAGCGGTACAATGAGTT
CGAGAGGGCGCGCGCGATCTTCCAGCGGTTCACCATTGTTCACCCTGAAC
CACGCAATTGGATCAAGTGGGCTCGGTTTGAAGAGGAGTATGGAACGAGC
GATCTCGTGCGGGAGGTGTATGGAATGGCGATTGAGACTCTGGGAGAGGA
TTTCATGGACGAGAAGCTCTTCATCGGCTATGCCAAGTTCGAGGCGAAGT
TGAAGGAGTACGAACGTGCCCGGGCGATTTACAAGTATGCCTTAGACCGA
CTTCCTCGCTCAAAGTCCACGGCCCTTCACAAGTCCTATACAACATTCGA
GAAACAATATGGTGACCGGGAAGGCGTTGAGGATGTTATTCTCTCAAAAC
GCAGAGTCCAGTACGAGGAGCAACTGAAAGAGAACTCGCGGAACTACGAC
ATATGGTTCGACTTTGCCCGGCTCGAGGAAACCTCGGGTGACCCCGACCG
AGTACGCGACATCTACGAACGCGCAATCGCTCAGATACCACCATCGCAGG
AGAAGCGGCACTGGAGACGGTATATCTACCTGTGGGTATTCTACGCCATT
TGGGAGGAAATGGAAGCCAAGGACGCCGAGCGTGCGCGCCAAATCTACAA
CGAGTGTCTCAAGTTGATTCCCCACAAAAAGTTCACCTTTGCCAAGATCT
GGCTCCTGAAGGCGCAGTTTGAGATCCGTCAGATGAATCTCCAAGCCGCT
CGTAAGACGCTTGGCCAGGCCATCGGCATGTGCCCGAAGGATAAACTCTT
CCGGGGATACATTGATCTAGAGCGCCAGCTGTTCGAGTTCGTGCGGTGCC
GGACACTGTTCGAAAAGCAGATCGAGTGGAATCCTTCCAACAGCCAGTCA
TGGATCAAGTATGCCGAATTGGAGCGCGGGCTGGACGACACCGACCGTGC
ACGAGCCATCTACGAGCTTGGAATTGACCAGCCGACACTCGATATGCCCG
AGTTGGTGTGGAAGTCGTACATTGACTTTGAGGAGTACGAAGGCGAATAC
GACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGGAGAAGACAGATCACGT
CAAGGTGTGGATTAACTACGCCCGCTTCGAGATCAACGTCCCCGACGAGG
AAGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCCGATCAGCGAGGATGCC
AAGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTCACAAGGTGTTCAAGGA
GAAGGAGCTCAAGGAAGAGCGCGTGGAATTGCTCAATGCTTGGCGGTCAT
TCGAGCACACGCACGGTTCACCAGAAGACATCGACAAGATCGAGAAACAG
ATGCCCCGGCGAGTCAAGAAGCGGCGCAAGTTGGACGACGATCGGTACGA
GGAGTACATGGATTACGTATTCCCAGCAGACGACCAGTCGGCGGCGAATC
TGTCGAAGCTGCTGCAAAGAGCTCACCAATGGAAGCAGCAACAGCAACAA
CAGGGGGATGGAGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013026 |
| DBxref | InterPro:IPR019734 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR003107 |
| DBxref | PFAM:PF02184 |
| Product | NineTeen Complex (NTC) component |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An08 | supercontig | An08:441669..443757 + |
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