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Sequences
The following sequences are available for this feature:
mRNA from alignment at An08:935469..936336+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_005254-T1 ID=CBS51388_005254-T1|Name=CBS51388_005254-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=868bp|location=Sequence derived from alignment at An08:935469..936336+ (Aspergillus niger CBS 513.88)
ATGTCTAAGATCACAGTCGGTACGTTGCCTCTTTTCCCCAACAATGGAAA
CAATAGGTGTATGTGTATGAAAGAGAGATGCTAATTAATGAACAGCCGGA
GTGCGCCAGAACATCGAGCAGCTGCTCAACTACTCTCAGAATGAGAAGAA
GAGAAACTTCCTCGAGACCGTCGAGCTTCAGATCGGTCTGAAGAACTACG
ACCCCCAGCGTGACAAGCGTTTCTCTGGCACCATCAAGCTGCCTACCGTT
CCCCGTCCCAACATGACCATCTGGTATGATACCGCCCCCACCGGAATCCT
CCCACGGATTAAAGAGAGACAAGGGAACAGAAGTACTAATAAGAGGATAG
TGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACCACGGCATTG
ACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAACAAGAAGCTC
ATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTCCGACACCCT
CATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCAAGGGTAAGC
ACCACATTCCCCATAATATCCCCCAGTCGTGATGAAATACTAAATACTCG
ATTAGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCA
ACAAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTT
CTCTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCT
CGTCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGA
AGGGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCC
CCTAAGCGTCTGTACTAA back to topCoding sequence (CDS) from alignment at An08:935469..936336+ >CBS51388_005254-T1 ID=CBS51388_005254-T1|Name=CBS51388_005254-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2616bp|location=Sequence derived from alignment at An08:935469..936336+ (Aspergillus niger CBS 513.88)
ATGTCTAAGATCACAGTCGCCGGAGTGCGCCAGAACATCGAGCAGCTGCT
CAACTACTCTCAGAATGAGAAGAAGAGAAACTTCCTCGAGACCGTCGAGC
TTCAGATCGGTCTGAAGAACTACGACCCCCAGCGTGACAAGCGTTTCTCT
GGCACCATCAAGCTGCCTACCGTTCCCCGTCCCAACATGACCATCTGTGT
TCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACCACGGCATTGACG
CCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAACAAGAAGCTCATC
AAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTCCGACACCCTCAT
CAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCAAGGCCGGTAAAT
TCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAACAAGGTCAACGAG
GTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTCTCTGCCTCGGTGT
TGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTCGTCGCCAACACCA
TGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAAGGGTTGGCAGAAC
GTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCCCTAAGCGTCTGTA
CTAAATGTCTAAGATCACAGTCGCCGGAGTGCGCCAGAACATCGAGCAGC
TGCTCAACTACTCTCAGAATGAGAAGAAGAGAAACTTCCTCGAGACCGTC
GAGCTTCAGATCGGTCTGAAGAACTACGACCCCCAGCGTGACAAGCGTTT
CTCTGGCACCATCAAGCTGCCTACCGTTCCCCGTCCCAACATGACCATCT
GTGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACCACGGCATT
GACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAACAAGAAGCT
CATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTCCGACACCC
TCATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCAAGGCCGGT
AAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAACAAGGTCAA
CGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTCTCTGCCTCG
GTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTCGTCGCCAAC
ACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAAGGGTTGGCA
GAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCCCTAAGCGTC
TGTACTAAATGTCTAAGATCACAGTCGCCGGAGTGCGCCAGAACATCGAG
CAGCTGCTCAACTACTCTCAGAATGAGAAGAAGAGAAACTTCCTCGAGAC
CGTCGAGCTTCAGATCGGTCTGAAGAACTACGACCCCCAGCGTGACAAGC
GTTTCTCTGGCACCATCAAGCTGCCTACCGTTCCCCGTCCCAACATGACC
ATCTGTGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACCACGG
CATTGACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAACAAGA
AGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTCCGAC
ACCCTCATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCAAGGC
CGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAACAAGG
TCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTCTCTGC
CTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTCGTCGC
CAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAAGGGTT
GGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCCCTAAG
CGTCTGTACTAAATGTCTAAGATCACAGTCGCCGGAGTGCGCCAGAACAT
CGAGCAGCTGCTCAACTACTCTCAGAATGAGAAGAAGAGAAACTTCCTCG
AGACCGTCGAGCTTCAGATCGGTCTGAAGAACTACGACCCCCAGCGTGAC
AAGCGTTTCTCTGGCACCATCAAGCTGCCTACCGTTCCCCGTCCCAACAT
GACCATCTGTGTTCTTGGTGACCAGCACGATCTCGACCGTGCCAAGCACC
ACGGCATTGACGCCATGTCCGCCGATGACCTGAAGAAGCTGAACAAGAAC
AAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCTTTCCTTGCTTC
CGACACCCTCATCAAGCAGATCCCCCGTCTCTTGGGTCCTGGTCTTTCCA
AGGCCGGTAAATTCCCTACCCCCGTCTCTCACGCTGAGGACATGGCCAAC
AAGGTCAACGAGGTCAAGTCCACCATCAAGTTCCAGCTTAAGAAGGTTCT
CTGCCTCGGTGTTGCCGTCGGTAACGTTGGCATGACTGAGGACGAGCTCG
TCGCCAACACCATGCTGGCCATCAACTACCTTGTCTCTCTGCTTAAGAAG
GGTTGGCAGAACGTTGGTAGCCTTGTCCTCAAGGCTACCATGTCTCCCCC
TAAGCGTCTGTACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015934 | large ribosomal subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264LBC |
| DBxref | InterPro:IPR023674 |
| DBxref | InterPro:IPR023673 |
| DBxref | InterPro:IPR028364 |
| DBxref | InterPro:IPR016095 |
| DBxref | InterPro:IPR002143 |
| DBxref | PFAM:PF00687 |
| Product | 60S ribosomal protein L10a |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An08 | supercontig | An08:935469..936336 + |
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