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Sequences
The following sequences are available for this feature:
mRNA from alignment at An08:1459203..1460303- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_005424-T1 ID=CBS51388_005424-T1|Name=CBS51388_005424-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1101bp|location=Sequence derived from alignment at An08:1459203..1460303- (Aspergillus niger CBS 513.88)
ATGGATCACACAGGCCCGGATGAAGATGGGCTCCCAACAAACACGAACCA
CTCGCGCATGCACAATCGTAATCGCTCCAGCGTCGATGGAACCAAATACA
AGGATGGACAATGGTCGCCAGATAATGAGAGAATCGTTCTGGGACCATAC
GATTATATGCTACAGCACCCCGGCAAAGACATACGGCGGCAGCTTATCAA
CGCTTTCAACGTATGGTTGAAGGTACCCCCGGAGAGCCTCTCAATCATCA
CAAAGGTGGTGGCCATGCTTCATACTGCATCGTTACTGTAAGCTGTTTTC
ATCGTGCCTCGGTTTAGTCTGGACACCTACCTGACCTATGGCGTATGAGC
CAGGATCGATGATGTCGAGGATAACTCTATTTTGCGACGCGGTATTCCCG
TAGCTCATAACATATACGGCACCGCGCAAACCATCAACTCTGCGAACTAT
GTATATTTCCTTGCTCTGCAAGAGGTGCAAAAGTTGAACAACCCCGCTGC
GATTGACATCTACGTCCAAGAGTTATTGAACCTACACCGCGGTCAAGGAA
TGGATCTCTTCTGGCGAGATACTCTGACTTGCCCCAGCGAGGACGAGTAT
TTGGAAATGGTCGGTAACAAAACTGGGGGTTTGTTCCGACTTGCAGTGAA
GTTGATGCAGGCTGAAAGTAGCTCCGGAAAGGACTGCGTGAGCCTCGTCA
ACGTCATGGGGCTGATTTTCCAAATCTGCGACGACTACCTCAACCTGTCC
AACACTACGTACACCAAGAACAAAGGTCTTTGTGAAGATCTCACGGAGGG
AAAGTTCTCCTTTCCCATCATTCATAGTATCCGATCCAACCCCGGAAACC
ACCAGCTCCTGAGTATTCTCAAGCAAAAGACGAAAGATGACGAAGTCAAA
CTGTATGCAGTCAGTTACATGGAGAGCACTGGCAGTTTTGCGCACACGCG
GGACGTGGTCCGAGAATTGCGAGCCAAAGCACTGACCCTAATTCAAGCGA
TCGATGGTGACCAAGCAGATGGACGCGAAGACGGCGCCATGGTTCGGGCG
ATCCTCAACAAGATCACCGAGTCGACACTGGGGGAGTGTGGTCCCCAGTA
G back to topCoding sequence (CDS) from alignment at An08:1459203..1460303- >CBS51388_005424-T1 ID=CBS51388_005424-T1|Name=CBS51388_005424-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2070bp|location=Sequence derived from alignment at An08:1459203..1460303- (Aspergillus niger CBS 513.88)
GATCGATGATGTCGAGGATAACTCTATTTTGCGACGCGGTATTCCCGTAG
CTCATAACATATACGGCACCGCGCAAACCATCAACTCTGCGAACTATGTA
TATTTCCTTGCTCTGCAAGAGGTGCAAAAGTTGAACAACCCCGCTGCGAT
TGACATCTACGTCCAAGAGTTATTGAACCTACACCGCGGTCAAGGAATGG
ATCTCTTCTGGCGAGATACTCTGACTTGCCCCAGCGAGGACGAGTATTTG
GAAATGGTCGGTAACAAAACTGGGGGTTTGTTCCGACTTGCAGTGAAGTT
GATGCAGGCTGAAAGTAGCTCCGGAAAGGACTGCGTGAGCCTCGTCAACG
TCATGGGGCTGATTTTCCAAATCTGCGACGACTACCTCAACCTGTCCAAC
ACTACGTACACCAAGAACAAAGGTCTTTGTGAAGATCTCACGGAGGGAAA
GTTCTCCTTTCCCATCATTCATAGTATCCGATCCAACCCCGGAAACCACC
AGCTCCTGAGTATTCTCAAGCAAAAGACGAAAGATGACGAAGTCAAACTG
TATGCAGTCAGTTACATGGAGAGCACTGGCAGTTTTGCGCACACGCGGGA
CGTGGTCCGAGAATTGCGAGCCAAAGCACTGACCCTAATTCAAGCGATCG
ATGGTGACCAAGCAGATGGACGCGAAGACGGCGCCATGGTTCGGGCGATC
CTCAACAAGATCACCGAGTCGACACTGGGGGAGTGTGGTCCCCAGTAGAT
GGATCACACAGGCCCGGATGAAGATGGGCTCCCAACAAACACGAACCACT
CGCGCATGCACAATCGTAATCGCTCCAGCGTCGATGGAACCAAATACAAG
GATGGACAATGGTCGCCAGATAATGAGAGAATCGTTCTGGGACCATACGA
TTATATGCTACAGCACCCCGGCAAAGACATACGGCGGCAGCTTATCAACG
CTTTCAACGTATGGTTGAAGGTACCCCCGGAGAGCCTCTCAATCATCACA
AAGGTGGTGGCCATGCTTCATACTGCATCGTTACTGATCGATGATGTCGA
GGATAACTCTATTTTGCGACGCGGTATTCCCGTAGCTCATAACATATACG
GCACCGCGCAAACCATCAACTCTGCGAACTATGTATATTTCCTTGCTCTG
CAAGAGGTGCAAAAGTTGAACAACCCCGCTGCGATTGACATCTACGTCCA
AGAGTTATTGAACCTACACCGCGGTCAAGGAATGGATCTCTTCTGGCGAG
ATACTCTGACTTGCCCCAGCGAGGACGAGTATTTGGAAATGGTCGGTAAC
AAAACTGGGGGTTTGTTCCGACTTGCAGTGAAGTTGATGCAGGCTGAAAG
TAGCTCCGGAAAGGACTGCGTGAGCCTCGTCAACGTCATGGGGCTGATTT
TCCAAATCTGCGACGACTACCTCAACCTGTCCAACACTACGTACACCAAG
AACAAAGGTCTTTGTGAAGATCTCACGGAGGGAAAGTTCTCCTTTCCCAT
CATTCATAGTATCCGATCCAACCCCGGAAACCACCAGCTCCTGAGTATTC
TCAAGCAAAAGACGAAAGATGACGAAGTCAAACTGTATGCAGTCAGTTAC
ATGGAGAGCACTGGCAGTTTTGCGCACACGCGGGACGTGGTCCGAGAATT
GCGAGCCAAAGCACTGACCCTAATTCAAGCGATCGATGGTGACCAAGCAG
ATGGACGCGAAGACGGCGCCATGGTTCGGGCGATCCTCAACAAGATCACC
GAGTCGACACTGGGGGAGTGTGGTCCCCAGTAGATGGATCACACAGGCCC
GGATGAAGATGGGCTCCCAACAAACACGAACCACTCGCGCATGCACAATC
GTAATCGCTCCAGCGTCGATGGAACCAAATACAAGGATGGACAATGGTCG
CCAGATAATGAGAGAATCGTTCTGGGACCATACGATTATATGCTACAGCA
CCCCGGCAAAGACATACGGCGGCAGCTTATCAACGCTTTCAACGTATGGT
TGAAGGTACCCCCGGAGAGCCTCTCAATCATCACAAAGGTGGTGGCCATG
CTTCATACTGCATCGTTACT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008299 | isoprenoid biosynthetic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_8.4 |
| Note | SMCOG1182:Polyprenyl synthetase |
| DBxref | InterPro:IPR033749 |
| DBxref | InterPro:IPR008949 |
| DBxref | InterPro:IPR000092 |
| DBxref | PFAM:PF00348 |
| Product | farnesyltranstransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An08 | supercontig | An08:1459203..1460303 - |
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