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Sequences
The following sequences are available for this feature:
mRNA from alignment at An08:2089828..2090713+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_005628-T1 ID=CBS51388_005628-T1|Name=CBS51388_005628-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=886bp|location=Sequence derived from alignment at An08:2089828..2090713+ (Aspergillus niger CBS 513.88)
ATGTGTACGTGAATGACCCTGAAATCGGATTTCCAACCCTGCCTATTTGA
TTTCCGTCGCTGTTCGTTTTTTGCCGGTCATTTTTGGAGGAAATATTCAT
CGCTGGGGTTTTGGAGAAAAGAGAAAAGGACTATCATCGCGGATATAGAC
GGCAGCAACAGCAGCGACGGAATCATTGAATATTTTTCATCATCATCATG
GCAACAACCGATTTCTTAAGACAGAAAGGCTGACTTGCGGTTTTTGGAAT
TTTTTAGCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCG
TCTGCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGA
CCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAG
GCCGACGTTGACCTCAGCAAGCGGTACGTTTACACTACACTACATTTCTC
GATGGTTCGAATGCGAGGCAGGGGATAAAAGAGTGGGAGTGGATTCCACG
GACAAGAGAAGGGAGAAGAGCAAACACCACGAGGTTGAAAGGGCAGGAGA
TACAAGAACAGCCAAGTTGACTTTCCTACTTTCTACAGCGCTGGTGAACT
CACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCC
AGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGAT
GGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGA
GGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACT
ACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGT
GGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAA back to topCoding sequence (CDS) from alignment at An08:2089828..2090713+ >CBS51388_005628-T1 ID=CBS51388_005628-T1|Name=CBS51388_005628-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1404bp|location=Sequence derived from alignment at An08:2089828..2090713+ (Aspergillus niger CBS 513.88)
ATGTCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCT
GCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGACCC
AGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCC
GACGTTGACCTCAGCAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGA
GCGTATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCT
GGTTCCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAGGTC
GTCTCCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAA
GAAGATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCC
GCGGTCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTC
AGCAAGAAGAAGAACTAAATGTCGCTCGTGTCCGGCGAGAAGACGAACTT
CCAGTACATTCTGCGTCTGCTCAACACCAATGTTGACGGCAAGCAGAAGA
TCATGTACGCCTTGACCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAAC
TTGGTCTGCAAGAAGGCCGACGTTGACCTCAGCAAGCGCGCTGGTGAACT
CACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCC
AGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGAT
GGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGA
GGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACT
ACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGT
GGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAAATGTCGCTCGTGTC
CGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCAACACCAATG
TTGACGGCAAGCAGAAGATCATGTACGCCTTGACCCAGATCAAGGGTGTT
GGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGTTGACCTCAG
CAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGAGCGTATCGTCACCA
TCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCTGGTTCCTCAACAGA
CAGCGCGACATCACCGATGGCAAGGACTCCCAGGTCGTCTCCAACTCCCT
CGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAAGAAGATCCGCTCCC
ACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACC
AAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTCAGCAAGAAGAAGAA
CTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264YEG |
| DBxref | InterPro:IPR010979 |
| DBxref | InterPro:IPR018269 |
| DBxref | InterPro:IPR027437 |
| DBxref | InterPro:IPR001892 |
| DBxref | PFAM:PF00416 |
| Product | ribosomal 40S subunit protein S18B |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An08 | supercontig | An08:2089828..2090713 + |
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