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CBS51388_005630-T1, CBS51388_005630-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_005630-T1
Unique NameCBS51388_005630-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An08:2093680..2094955+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_005630-T1 ID=CBS51388_005630-T1|Name=CBS51388_005630-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1276bp|location=Sequence derived from alignment at An08:2093680..2094955+ (Aspergillus niger CBS 513.88)
ATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGT
CGTCAGGCTAAAAAAGGGTACGTATTGATATGCATGTGTGGCCCTTCATT
TGCGATCGTCTTGCGTGGCATGTCTGTCAATAATGTGGGGAGATCATGCG
CAAATTCAGCGTAGAAAGAAAAACTGCCTGCGAAACTTCCAGTCGGCCCC
GCAACCCCGCTAACCGTTTCACCAACAGGTAAAAAGCGCTTCGAACTCGC
CTGCTACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATC
TCGACAATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCG
CAAACAGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCC
TGCAGATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTG
GCGAGCGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTG
GATATCGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATAC
CCCCGGAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTC
AACAGCAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGC
GAGGAGAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAA
GTCGGCGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGC
AACCTATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCT
GTGTCACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGC
CGCGGGTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGA
ACAAGAAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAG
GATGAGGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAG
CAATGTCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGG
AGGTTGTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGA
GCTTTCAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGG
ACGTGTGGAGGTGCTGGATATGACGGTGACCCATGAAGAGTAAGCCCCGC
CGGGATTACTTCTGGTGCAACCATGTACAGCCTGCTATGATTGATGACTA
GGAAGGATACCAAAATTATGCCATAA
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Coding sequence (CDS) from alignment at An08:2093680..2094955+

>CBS51388_005630-T1 ID=CBS51388_005630-T1|Name=CBS51388_005630-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3159bp|location=Sequence derived from alignment at An08:2093680..2094955+ (Aspergillus niger CBS 513.88)
ATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGT
CGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAACTCGCCTGCTACAAGA
ACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAATGTC
CTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGCCCC
ATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATGAGA
TCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAG
CGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGTATC
AGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAATGA
TTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAGTCG
CAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAGCCG
CCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGAAGA
GTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATCCCT
GTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACTGTT
GAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTA
AAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAGGGT
GGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGCAGG
TGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCAAGG
ATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTCGGC
GGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGG
ATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGGAGG
TGCTGGATATGACGGTGACCCATGAAGAGAAGGATACCAAAATTATGCCA
TAAATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATC
AGTCGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAACTCGCCTGCTACA
AGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAAT
GTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGC
CCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATG
AGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGT
GAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGT
ATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAA
TGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAG
TCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAG
CCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGA
AGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATC
CCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACT
GTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTG
GTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAG
GGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGC
AGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCA
AGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTC
GGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAA
GGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGG
AGGTGCTGGATATGACGGTGACCCATGAAGAGAAGGATACCAAAATTATG
CCATAAATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGT
ATCAGTCGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAACTCGCCTGCT
ACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGAC
AATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAAC
AGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAG
ATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAG
CGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATAT
CGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCG
GAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAG
CAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGA
GAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGG
CGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCT
ATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTC
ACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGG
GTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAG
AAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGA
GGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATG
TCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTT
GTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTT
CAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTG
TGGAGGTGCTGGATATGACGGTGACCCATGAAGAGAAGGATACCAAAATT
ATGCCATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0042256mature ribosome assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_005630CBS51388_005630Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005630-T1.exon1CBS51388_005630-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_005630-T1.exon2CBS51388_005630-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_005630-T1.exon3CBS51388_005630-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005630-T1.cdsCBS51388_005630-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005630-T1CBS51388_005630-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926400M
DBxrefInterPro:IPR018978
DBxrefInterPro:IPR036786
DBxrefInterPro:IPR002140
DBxrefInterPro:IPR019783
DBxrefInterPro:IPR037188
DBxrefPFAM:PF09377
DBxrefPFAM:PF01172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An08supercontigAn08:2093680..2094955 +
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