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CBS51388_005999-T1, CBS51388_005999-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_005999-T1
Unique NameCBS51388_005999-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An09:348754..349079+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_005999-T1 ID=CBS51388_005999-T1|Name=CBS51388_005999-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=326bp|location=Sequence derived from alignment at An09:348754..349079+ (Aspergillus niger CBS 513.88)
ATGCCTCGTGCCGTCAGAGGTATCACAACCGCAGCACCGTCCAATTCCAA
CTATCGCTAACGAAGGCCTAAACAGGAGTCCTCATCGAGTGCGATCCGTC
CGTGAAAGCCATTATTCTCAAGTACGACGAAGAAAGACACGACTATATCG
TTGAAGACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTG
CAGAACCTGAAGGCGAGGTTGACAAAGGTAGGGATGCCGGAATGAGCTGT
TTGGGGCCTGACGCTGATGAGGCAACAGGAGCTTGACGATAAGGTTATGC
AGCCTGATGAATCGGAGTCGGAGTGA
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Coding sequence (CDS) from alignment at An09:348754..349079+

>CBS51388_005999-T1 ID=CBS51388_005999-T1|Name=CBS51388_005999-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=657bp|location=Sequence derived from alignment at An09:348754..349079+ (Aspergillus niger CBS 513.88)
ATGCCTCGTGCCGTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAA
AGCCATTATTCTCAAGTACGACGAAGAAAGACACGACTATATCGTTGAAG
ACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAAC
CTGAAGGCGAGGTTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGA
TGAATCGGAGTCGGAGTGAATGCCTCGTGCCGTCAGAGGAGTCCTCATCG
AGTGCGATCCGTCCGTGAAAGCCATTATTCTCAAGTACGACGAAGAAAGA
CACGACTATATCGTTGAAGACCTCGACGATGACCGTCATCTGGTCATCAA
GGAGAGCCAGCTGCAGAACCTGAAGGCGAGGTTGACAAAGGAGCTTGACG
ATAAGGTTATGCAGCCTGATGAATCGGAGTCGGAGTGAATGCCTCGTGCC
GTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAAAGCCATTATTCT
CAAGTACGACGAAGAAAGACACGACTATATCGTTGAAGACCTCGACGATG
ACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAACCTGAAGGCGAGG
TTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGATGAATCGGAGTC
GGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006367transcription initiation from RNA polymerase II promoter
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TFB5CBS51388_005999Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005999-T1.exon1CBS51388_005999-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_005999-T1.exon2CBS51388_005999-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_005999-T1.exon3CBS51388_005999-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005999-T1.cdsCBS51388_005999-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005999-T1CBS51388_005999-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_9.3
DBxrefInterPro:IPR035935
DBxrefInterPro:IPR009400
DBxrefPFAM:PF06331
ProductTFIIH complex subunit tfb5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An09supercontigAn09:348754..349079 +
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