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Sequences
The following sequences are available for this feature:
mRNA from alignment at An09:1331633..1332968+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006323-T1 ID=CBS51388_006323-T1|Name=CBS51388_006323-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1336bp|location=Sequence derived from alignment at An09:1331633..1332968+ (Aspergillus niger CBS 513.88)
ATGGATGATGCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTACTG
CTGTTATCTGCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGGCT
CCACTCCACACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTAAA
GGTGGCGCTCGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATGGT
CTTGCTCGTTGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGAGT
AAGCATCTATGAACACATTATCGCGCTCTTATTACGCTGTAGATCTGATA
GCATTGTAGGTGGGCATGGCAGAACCCAAGGATGTCTTCGCAGCACCCGG
CAAATCGCCACCAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCA
GGGGTTCAGCCCAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGG
CTCCCGGAGATCATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTAC
GTTCGACCTATTTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGA
GACGTCTACCAATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCT
TCCCGAGCATGTCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACC
TGTCATGGGCTGACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTC
GATTACAGTGATATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGA
TGATCCCAGCGATTTGCGTTGCAAAATATGTCAAGCAAAGATCGCCCTCA
GTGAAGAACTGGCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGC
CATCTATTGTGTCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGA
GCAGCTCGTTCCGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCC
AATGGTCAACAATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAAT
GAGTTTCGTGCCATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCA
TGGTTCTGTCCATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCG
AAAACCCAGGCAGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTC
AGCGATAGTCTCGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAA
TTGGACGGAGTCGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACC
GCCCAAAGGATCATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGAC
GACAGTGACTGCGAAGAGATGGAGGATTTGGGATGA back to topCoding sequence (CDS) from alignment at An09:1331633..1332968+ >CBS51388_006323-T1 ID=CBS51388_006323-T1|Name=CBS51388_006323-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2550bp|location=Sequence derived from alignment at An09:1331633..1332968+ (Aspergillus niger CBS 513.88)
ATGGATGATGCAGAGGTTGATCATACTAAACCAATCCCGGCCTACTACTG
CTGTTATCTGCTGCGCTCGACCAAACAGCGCACCTCCCTGTATATTGGCT
CCACTCCACACCCTGCCAGGCGACTTGCGCAGCACAATGGGGAGTCTAAA
GGTGGCGCTCGCAAAACAGCCAAGGATGACAAAAGACCGTGGGAGATGGT
CTTGCTCGTTGAGGGCTTTACGAGCCGCGTTGGCGCGTTGCAATTCGAGT
GGGCATGGCAGAACCCAAGGATGTCTTCGCAGCACCCGGCAAATCGCCAC
CAGTTCGACCTAGAAACTGGCGATGTGGCAGGCACCTCAGGGGTTCAGCC
CAGTACCGAGGCCGGCAAGGCCAAGCATCGAGGTCGTGGCTCCCGGAGAT
CATTGAAGGCCCATTTAGAAGATTTGCATCTTTTCTTACGTTCGACCTAT
TTTTCGAAATGGCCACTGAGGTTACGATTCTTCAACAGAGACGTCTACCA
ATTGTGGACGACTTGGTGCGACCGCGTTGATGCCTTGCTTCCCGAGCATG
TCCGGACCATTTTAGATGGGGACTGTCCTAAGGACCACCTGTCATGGGCT
GACGAGCCGAGAGTCGGAAGCGTTGAACATATCAAGGTCGATTACAGTGA
TATCTATGACTACGTAGAGAAGTCCCATTTCTTGCTGGATGATCCCAGCG
ATTTGCGTTGCAAAATATGTCAAGCAAAGATCGCCCTCAGTGAAGAACTG
GCTCTAGTCTGCCCCCGGGCGAGCTGCTACTGCATCAGCCATCTATTGTG
TCTGTCATCCAGGTTTCTGGACCACGCCGAGGAGCCCGAGCAGCTCGTTC
CGATTGATGGAATTTGTCCTCTATGTAATAAGGTCATCCAATGGTCAACA
ATGATGCAGGAACTGAGCCTCAGAACTCGAGGACATAATGAGTTTCGTGC
CATTCTGCGCAAGGCAAAACGAGGCCGTGCAAAGGCGCATGGTTCTGTCC
ATGAAGCAAGCGCCCCTGATGGAGTAGCCAGCGCCGTCGAAAACCCAGGC
AGCCGAGCTGCTTGCGTCGAGAGTGCGTCAGTTGGCGTCAGCGATAGTCT
CGATGTGGATAATCATGACGACGCCAGTTTGGATGAGAATTGGACGGAGT
CGTTGGATCTGGATCCGAATCCCGATGAACTCTTGAACCGCCCAAAGGAT
CATAAGATGGAGTCGTCTAGGGTGGAAATCATCATAGACGACAGTGACTG
CGAAGAGATGGAGGATTTGGGATGAATGGATGATGCAGAGGTTGATCATA
CTAAACCAATCCCGGCCTACTACTGCTGTTATCTGCTGCGCTCGACCAAA
CAGCGCACCTCCCTGTATATTGGCTCCACTCCACACCCTGCCAGGCGACT
TGCGCAGCACAATGGGGAGTCTAAAGGTGGCGCTCGCAAAACAGCCAAGG
ATGACAAAAGACCGTGGGAGATGGTCTTGCTCGTTGAGGGCTTTACGAGC
CGCGTTGGCGCGTTGCAATTCGAGTGGGCATGGCAGAACCCAAGGATGTC
TTCGCAGCACCCGGCAAATCGCCACCAGTTCGACCTAGAAACTGGCGATG
TGGCAGGCACCTCAGGGGTTCAGCCCAGTACCGAGGCCGGCAAGGCCAAG
CATCGAGGTCGTGGCTCCCGGAGATCATTGAAGGCCCATTTAGAAGATTT
GCATCTTTTCTTACGTTCGACCTATTTTTCGAAATGGCCACTGAGGTTAC
GATTCTTCAACAGAGACGTCTACCAATTGTGGACGACTTGGTGCGACCGC
GTTGATGCCTTGCTTCCCGAGCATGTCCGGACCATTTTAGATGGGGACTG
TCCTAAGGACCACCTGTCATGGGCTGACGAGCCGAGAGTCGGAAGCGTTG
AACATATCAAGGTCGATTACAGTGATATCTATGACTACGTAGAGAAGTCC
CATTTCTTGCTGGATGATCCCAGCGATTTGCGTTGCAAAATATGTCAAGC
AAAGATCGCCCTCAGTGAAGAACTGGCTCTAGTCTGCCCCCGGGCGAGCT
GCTACTGCATCAGCCATCTATTGTGTCTGTCATCCAGGTTTCTGGACCAC
GCCGAGGAGCCCGAGCAGCTCGTTCCGATTGATGGAATTTGTCCTCTATG
TAATAAGGTCATCCAATGGTCAACAATGATGCAGGAACTGAGCCTCAGAA
CTCGAGGACATAATGAGTTTCGTGCCATTCTGCGCAAGGCAAAACGAGGC
CGTGCAAAGGCGCATGGTTCTGTCCATGAAGCAAGCGCCCCTGATGGAGT
AGCCAGCGCCGTCGAAAACCCAGGCAGCCGAGCTGCTTGCGTCGAGAGTG
CGTCAGTTGGCGTCAGCGATAGTCTCGATGTGGATAATCATGACGACGCC
AGTTTGGATGAGAATTGGACGGAGTCGTTGGATCTGGATCCGAATCCCGA
TGAACTCTTGAACCGCCCAAAGGATCATAAGATGGAGTCGTCTAGGGTGG
AAATCATCATAGACGACAGTGACTGCGAAGAGATGGAGGATTTGGGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0033557 | Slx1-Slx4 complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0017108 | 5'-flap endonuclease activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027520 |
| DBxref | InterPro:IPR035901 |
| DBxref | InterPro:IPR013083 |
| DBxref | InterPro:IPR000305 |
| DBxref | PFAM:PF01541 |
| Product | Slx4p interacting protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An09 | supercontig | An09:1331633..1332968 + |
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