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Sequences
The following sequences are available for this feature:
mRNA from alignment at An09:1403216..1403841+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006353-T1 ID=CBS51388_006353-T1|Name=CBS51388_006353-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=626bp|location=Sequence derived from alignment at An09:1403216..1403841+ (Aspergillus niger CBS 513.88)
ATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTC
CGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCA
TCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGT
CGCTTAACAAAACTAATCCTTCAAGTGAGTCTATTTGCAGTCTACTCCAA
TGCTACTGACTCGTACTGACTGAAGTCCTCTAGAATGCATCTTATGTGTA
TGTTTCTCCGCACTCGGACTCCCCTCGATCAATCCGAACTAACGAATGCA
CAAAGACTCTCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGG
TTACCGAGGACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCT
CCCGATGACAAGTACTCTCGGTAGGTTCTTTTCGCCGACGATCTCCAGGC
ACATTGGAGAGAATTTGTGGACTAATGATATTGGCTATTTAGGCACCGTG
TGACCCTCAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCCGGTATG
AAACCCCGAGTGCGAGTCCCCATATAGTGGATATGGCTGACGGCAGACTA
CAGACAAGGAGGCTGCTAAGCTGTAA back to topCoding sequence (CDS) from alignment at An09:1403216..1403841+ >CBS51388_006353-T1 ID=CBS51388_006353-T1|Name=CBS51388_006353-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1935bp|location=Sequence derived from alignment at An09:1403216..1403841+ (Aspergillus niger CBS 513.88)
ATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTC
CGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCA
TCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGT
CGCTTAACAAAACTAATCCTTCAATCCTCTAGAATGCATCTTATGTACTC
TCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGG
ACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGAC
AAGTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTAT
GACCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAAATGGGACCGCGCG
TGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTCCGCCAAAAATTTC
CTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCATCGATAAACGCAC
TCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGTCGCTTAACAAAAC
TAATCCTTCAATCCTCTAGAATGCATCTTATGTACTCTCTGGGCCCCGAT
GGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTAC
CAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGGC
ACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCC
GACAAGGAGGCTGCTAAGCTGTAAATGGGACCGCGCGTGACTAAGCTGGC
CCTTGGCCCGTGCCCCGTTCGGTCCGCCAAAAATTTCCTGCGTATCGCCG
AAGTTCAAGTGCAGCGGTTTGGCATCGATAAACGCACTCGTTCAACACCC
AGCACCTTCATTTCGTCTTCCAGTCGCTTAACAAAACTAATCCTTCAATC
CTCTAGAATGCATCTTATGTACTCTCTGGGCCCCGATGGCAAGCGGGTTT
ACACCCTCAAGAAGGTTACCGAGGACGGTCGCGTTACCAAGAGTGCTCAC
CCCGCCCGTTTCTCTCCCGATGACAAGTACTCTCGGCACCGTGTGACCCT
CAAGAAGAGATACGGTCTGCTTATGACCCAGCAAGCCGACAAGGAGGCTG
CTAAGCTGTAAATGGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGC
CCCGTTCGGTCCGCCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCA
GCGGTTTGGCATCGATAAACGCACTCGTTCAACACCCAGCACCTTCATTT
CGTCTTCCAGTCGCTTAACAAAACTAATCCTTCAATCCTCTAGAATGCAT
CTTATGTACTCTCTGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAA
GGTTACCGAGGACGGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCT
CTCCCGATGACAAGTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATAC
GGTCTGCTTATGACCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAAAT
GGGACCGCGCGTGACTAAGCTGGCCCTTGGCCCGTGCCCCGTTCGGTCCG
CCAAAAATTTCCTGCGTATCGCCGAAGTTCAAGTGCAGCGGTTTGGCATC
GATAAACGCACTCGTTCAACACCCAGCACCTTCATTTCGTCTTCCAGTCG
CTTAACAAAACTAATCCTTCAATCCTCTAGAATGCATCTTATGTACTCTC
TGGGCCCCGATGGCAAGCGGGTTTACACCCTCAAGAAGGTTACCGAGGAC
GGTCGCGTTACCAAGAGTGCTCACCCCGCCCGTTTCTCTCCCGATGACAA
GTACTCTCGGCACCGTGTGACCCTCAAGAAGAGATACGGTCTGCTTATGA
CCCAGCAAGCCGACAAGGAGGCTGCTAAGCTGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042254 | ribosome biogenesis |
| GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030515 | snoRNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036756 |
| DBxref | InterPro:IPR007264 |
| DBxref | PFAM:PF04135 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An09 | supercontig | An09:1403216..1403841 + |
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