You are here

Home

CBS51388_006363-T1, CBS51388_006363-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006363-T1
Unique NameCBS51388_006363-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An09:1428557..1430044+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006363-T1 ID=CBS51388_006363-T1|Name=CBS51388_006363-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1488bp|location=Sequence derived from alignment at An09:1428557..1430044+ (Aspergillus niger CBS 513.88)
ATGGCCACTCCAGCAGCTCCCTCACTCGCCCCTGCGCCCGGTCCAGCTCC
GTTGGCACCCGCATTGGCCGCCAAGCCAGCCATCTCACCGTCTCCCGGTC
CGGGCACACCCGGTTCCGTCACCTCCAAGGAATGGGTGATTCCCCCTCGT
CCCAAGCCCGGCCGCAAGCCCGCCACAGACACGCCCCCTACCAAACGCAA
AGCGCAGAATCGAGCTGCCCAGAGAGCTTTCCGCGAGCGTAGAGCAGCCC
GCGTCAACGAACTCGAGGACCAGATCAAGAAGATTGAAGACGACCATGAG
ATCCATGTGTTGCAACTCAAGGAGCAGATTTCGAACCTTTCCCATGAGGT
CGAACAATGTCGGAGCGAAATGGCCTGGTGGCGTGACCGTTGCCACGCTT
TGGAAAAAGAGGTCTCCGTCGAGCGCAGCGCTAAAGAAAGCCTCGTGAAG
GAGTTCCGCTCCTCGTTGTCCGACAAGAATGCCTCTCGCTCCGACAAGGC
ACCCTTGACACGCATACCCAGAGACTCATCTGCAGCTCATGCGGCAGTTG
AGAACAACATGCACGAGGAGCGGGAGGAGGTGCCCCTGGGCTGTAGTAAC
TGCTCGAACGTGCACTGTCAGTGCATTGAAGACGCCTTTAGTGGCATGCC
CGGCATCGAACGGACTTCAGCCCAGTCAAAGCGTCCTGATAACTCGAGCC
AGTCTCATGCCGAACCTGAAATCAAGCCCGAGCCAGAGGAGATGGAGATC
GATTTCACAACGCGATTCGCGGCCCCTCATCACGTCCAGGACGACACTGT
CACTAACGTTTCCTCCCCCGCCGTCGATCCTTGTGGTTTCTGCCAGGATG
GCACGCCATGCATTTGTGCTGAAATGGCTGCCCAGGAAGAGGAGCGCCGG
CGGCGCAACTCGTTCGAGAACAACCGCCTGGCACCCATCCAGAACCTGTC
GCAGTTCACGCCGCCCCCTTCCGACGGCGATGTGCGGTCCGAGGTGACCC
TCCCCCCCATTAGCCAAGCGACAAATCCCTGCGCCAATGGCCCGGGTACT
TGTGCCCAATGTCTCGCCGATCCCAGGCGGACCCTTTTTTGCAAGACGCT
GGCGGCCTCCCGCCCCGCCAGCGCTGCTCCCTCCGGATGTTGCGGCGGTA
AAGGCGCTGATGGTGGATGCTGCATGTCACGCAACTCCAACCCTCAACGC
AGCGGGTCGACTCAACAACAATCACAGACTTCCAGCTCGCGCCGCTCGGC
GACTCCATCCCTGACTCTCTCCTGTGCCGACGCCTTCACTACCCTCTCCC
GCCACCCGAACTTCTCTCGAGCTAGCGATGATATCTCTTCCTGGCTTCCC
AAACTTCACACTCTGCCTAATCCTAGTCAGAGCCAAAAGGAGGTTATGCA
ACCAGGCTCCCGAGCCGCATTGGAAGTCGAAGCCGCCAGTGTCATGGGTG
TGCTACGCTACTTTGATCGGAGATTCGCCGACAAGTGA
back to top

Coding sequence (CDS) from alignment at An09:1428557..1430044+

>CBS51388_006363-T1 ID=CBS51388_006363-T1|Name=CBS51388_006363-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1488bp|location=Sequence derived from alignment at An09:1428557..1430044+ (Aspergillus niger CBS 513.88)
ATGGCCACTCCAGCAGCTCCCTCACTCGCCCCTGCGCCCGGTCCAGCTCC
GTTGGCACCCGCATTGGCCGCCAAGCCAGCCATCTCACCGTCTCCCGGTC
CGGGCACACCCGGTTCCGTCACCTCCAAGGAATGGGTGATTCCCCCTCGT
CCCAAGCCCGGCCGCAAGCCCGCCACAGACACGCCCCCTACCAAACGCAA
AGCGCAGAATCGAGCTGCCCAGAGAGCTTTCCGCGAGCGTAGAGCAGCCC
GCGTCAACGAACTCGAGGACCAGATCAAGAAGATTGAAGACGACCATGAG
ATCCATGTGTTGCAACTCAAGGAGCAGATTTCGAACCTTTCCCATGAGGT
CGAACAATGTCGGAGCGAAATGGCCTGGTGGCGTGACCGTTGCCACGCTT
TGGAAAAAGAGGTCTCCGTCGAGCGCAGCGCTAAAGAAAGCCTCGTGAAG
GAGTTCCGCTCCTCGTTGTCCGACAAGAATGCCTCTCGCTCCGACAAGGC
ACCCTTGACACGCATACCCAGAGACTCATCTGCAGCTCATGCGGCAGTTG
AGAACAACATGCACGAGGAGCGGGAGGAGGTGCCCCTGGGCTGTAGTAAC
TGCTCGAACGTGCACTGTCAGTGCATTGAAGACGCCTTTAGTGGCATGCC
CGGCATCGAACGGACTTCAGCCCAGTCAAAGCGTCCTGATAACTCGAGCC
AGTCTCATGCCGAACCTGAAATCAAGCCCGAGCCAGAGGAGATGGAGATC
GATTTCACAACGCGATTCGCGGCCCCTCATCACGTCCAGGACGACACTGT
CACTAACGTTTCCTCCCCCGCCGTCGATCCTTGTGGTTTCTGCCAGGATG
GCACGCCATGCATTTGTGCTGAAATGGCTGCCCAGGAAGAGGAGCGCCGG
CGGCGCAACTCGTTCGAGAACAACCGCCTGGCACCCATCCAGAACCTGTC
GCAGTTCACGCCGCCCCCTTCCGACGGCGATGTGCGGTCCGAGGTGACCC
TCCCCCCCATTAGCCAAGCGACAAATCCCTGCGCCAATGGCCCGGGTACT
TGTGCCCAATGTCTCGCCGATCCCAGGCGGACCCTTTTTTGCAAGACGCT
GGCGGCCTCCCGCCCCGCCAGCGCTGCTCCCTCCGGATGTTGCGGCGGTA
AAGGCGCTGATGGTGGATGCTGCATGTCACGCAACTCCAACCCTCAACGC
AGCGGGTCGACTCAACAACAATCACAGACTTCCAGCTCGCGCCGCTCGGC
GACTCCATCCCTGACTCTCTCCTGTGCCGACGCCTTCACTACCCTCTCCC
GCCACCCGAACTTCTCTCGAGCTAGCGATGATATCTCTTCCTGGCTTCCC
AAACTTCACACTCTGCCTAATCCTAGTCAGAGCCAAAAGGAGGTTATGCA
ACCAGGCTCCCGAGCCGCATTGGAAGTCGAAGCCGCCAGTGTCATGGGTG
TGCTACGCTACTTTGATCGGAGATTCGCCGACAAGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_006363CBS51388_006363Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006363-T1.exon1CBS51388_006363-T1.exon1Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006363-T1.cdsCBS51388_006363-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006363-T1CBS51388_006363-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR018287
DBxrefInterPro:IPR004827
DBxrefPFAM:PF10297
DBxrefPFAM:PF00170
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An09supercontigAn09:1428557..1430044 +
Powered by Drupal