|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An09:1562482..1563357- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006405-T1 ID=CBS51388_006405-T1|Name=CBS51388_006405-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=876bp|location=Sequence derived from alignment at An09:1562482..1563357- (Aspergillus niger CBS 513.88)
ATGCTTTACTTGGCCGGCGCGGCCCTCTGTGTGCGTATCGATCCATATGC
TAATGATTTGGCTAGATACGATTATCTTTTCAAGTTGCTCCTCATCGGAG
ACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTACGTTTTGCCGACGATACC
TATACGGAGAGCTACATCTCCACCATCGGAGTTGACTTCGTACGTATCTG
GCCTCTCATTATTCATCACAGCTGCTAGCAGTGAACTGCGTCATAGATCC
ACATCTAACGTTCCAATACAGAAAATTCGTACCATCGAGCTGGATGGAAA
GACGGTGAAACTCCAGATCGTAAGGCAGCCCCGTTCACAACAGTCGCTCA
CCTGGCTTAACTAACGGGCGCTCTAGTGGGATACTGCAGGCCAGGAACGT
TTCCGGACAATCACGTCGTCTTACTACCGTGGTGCCCATGGCATCTGTGT
CGTCTACGATGTTACCGACATGGACTCTTTCAACAATGTGAAGCAGTGGC
TTCAAGAGATTGATCGCTACGCCACTGAAGGTGTCAATAAGCTCCTTGTC
GGAAACAAGAGCGATATGGAAGACAAAAAGGTCGTGGAATACACAGTGGC
TAAGGTATGTGGCCAGACCTTGGTGTGGGACTCTTTATTTCTGGCAGAGT
GGGTGATTGACGCAATGTGTTGTTGGTTTAGGAATTCGCCGACAGCCTTG
GGATCCCGTTCTTGGAAACCTCGGCGAAGAACGCTTCGAATGTCGAGCAG
GCTTTTTTGACAATGGCGAGGCAGATCAAGGAACGCATGGGCACTGCGAC
TGTCAACAACAAGCCAACTGTGCAGGTTGGCCAAGGCCAGGGCGTTCAAT
CCGGCTCCGCGGGCGGCTGCTGCTAG back to topCoding sequence (CDS) from alignment at An09:1562482..1563357- >CBS51388_006405-T1 ID=CBS51388_006405-T1|Name=CBS51388_006405-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2640bp|location=Sequence derived from alignment at An09:1562482..1563357- (Aspergillus niger CBS 513.88)
GAATTCGCCGACAGCCTTGGGATCCCGTTCTTGGAAACCTCGGCGAAGAA
CGCTTCGAATGTCGAGCAGGCTTTTTTGACAATGGCGAGGCAGATCAAGG
AACGCATGGGCACTGCGACTGTCAACAACAAGCCAACTGTGCAGGTTGGC
CAAGGCCAGGGCGTTCAATCCGGCTCCGCGGGCGGCTGCTGCTAGTGGGA
TACTGCAGGCCAGGAACGTTTCCGGACAATCACGTCGTCTTACTACCGTG
GTGCCCATGGCATCTGTGTCGTCTACGATGTTACCGACATGGACTCTTTC
AACAATGTGAAGCAGTGGCTTCAAGAGATTGATCGCTACGCCACTGAAGG
TGTCAATAAGCTCCTTGTCGGAAACAAGAGCGATATGGAAGACAAAAAGG
TCGTGGAATACACAGTGGCTAAGAAAATTCGTACCATCGAGCTGGATGGA
AAGACGGTGAAACTCCAGATCATGCTTTACTTGGCCGGCGCGGCCCTCTG
TGTGCGTATCGATCCATATGCTAATGATTTGGCTAGATACGATTATCTTT
TCAAGTTGCTCCTCATCGGAGACTCTGGTGTCGGAAAGTCGTGCTTGCTC
CTACGTTTTGCCGACGATACCTATACGGAGAGCTACATCTCCACCATCGG
AGTTGACTTCGAATTCGCCGACAGCCTTGGGATCCCGTTCTTGGAAACCT
CGGCGAAGAACGCTTCGAATGTCGAGCAGGCTTTTTTGACAATGGCGAGG
CAGATCAAGGAACGCATGGGCACTGCGACTGTCAACAACAAGCCAACTGT
GCAGGTTGGCCAAGGCCAGGGCGTTCAATCCGGCTCCGCGGGCGGCTGCT
GCTAGTGGGATACTGCAGGCCAGGAACGTTTCCGGACAATCACGTCGTCT
TACTACCGTGGTGCCCATGGCATCTGTGTCGTCTACGATGTTACCGACAT
GGACTCTTTCAACAATGTGAAGCAGTGGCTTCAAGAGATTGATCGCTACG
CCACTGAAGGTGTCAATAAGCTCCTTGTCGGAAACAAGAGCGATATGGAA
GACAAAAAGGTCGTGGAATACACAGTGGCTAAGAAAATTCGTACCATCGA
GCTGGATGGAAAGACGGTGAAACTCCAGATCATGCTTTACTTGGCCGGCG
CGGCCCTCTGTGTGCGTATCGATCCATATGCTAATGATTTGGCTAGATAC
GATTATCTTTTCAAGTTGCTCCTCATCGGAGACTCTGGTGTCGGAAAGTC
GTGCTTGCTCCTACGTTTTGCCGACGATACCTATACGGAGAGCTACATCT
CCACCATCGGAGTTGACTTCGAATTCGCCGACAGCCTTGGGATCCCGTTC
TTGGAAACCTCGGCGAAGAACGCTTCGAATGTCGAGCAGGCTTTTTTGAC
AATGGCGAGGCAGATCAAGGAACGCATGGGCACTGCGACTGTCAACAACA
AGCCAACTGTGCAGGTTGGCCAAGGCCAGGGCGTTCAATCCGGCTCCGCG
GGCGGCTGCTGCTAGTGGGATACTGCAGGCCAGGAACGTTTCCGGACAAT
CACGTCGTCTTACTACCGTGGTGCCCATGGCATCTGTGTCGTCTACGATG
TTACCGACATGGACTCTTTCAACAATGTGAAGCAGTGGCTTCAAGAGATT
GATCGCTACGCCACTGAAGGTGTCAATAAGCTCCTTGTCGGAAACAAGAG
CGATATGGAAGACAAAAAGGTCGTGGAATACACAGTGGCTAAGAAAATTC
GTACCATCGAGCTGGATGGAAAGACGGTGAAACTCCAGATCATGCTTTAC
TTGGCCGGCGCGGCCCTCTGTGTGCGTATCGATCCATATGCTAATGATTT
GGCTAGATACGATTATCTTTTCAAGTTGCTCCTCATCGGAGACTCTGGTG
TCGGAAAGTCGTGCTTGCTCCTACGTTTTGCCGACGATACCTATACGGAG
AGCTACATCTCCACCATCGGAGTTGACTTCGAATTCGCCGACAGCCTTGG
GATCCCGTTCTTGGAAACCTCGGCGAAGAACGCTTCGAATGTCGAGCAGG
CTTTTTTGACAATGGCGAGGCAGATCAAGGAACGCATGGGCACTGCGACT
GTCAACAACAAGCCAACTGTGCAGGTTGGCCAAGGCCAGGGCGTTCAATC
CGGCTCCGCGGGCGGCTGCTGCTAGTGGGATACTGCAGGCCAGGAACGTT
TCCGGACAATCACGTCGTCTTACTACCGTGGTGCCCATGGCATCTGTGTC
GTCTACGATGTTACCGACATGGACTCTTTCAACAATGTGAAGCAGTGGCT
TCAAGAGATTGATCGCTACGCCACTGAAGGTGTCAATAAGCTCCTTGTCG
GAAACAAGAGCGATATGGAAGACAAAAAGGTCGTGGAATACACAGTGGCT
AAGAAAATTCGTACCATCGAGCTGGATGGAAAGACGGTGAAACTCCAGAT
CATGCTTTACTTGGCCGGCGCGGCCCTCTGTGTGCGTATCGATCCATATG
CTAATGATTTGGCTAGATACGATTATCTTTTCAAGTTGCTCCTCATCGGA
GACTCTGGTGTCGGAAAGTCGTGCTTGCTCCTACGTTTTGCCGACGATAC
CTATACGGAGAGCTACATCTCCACCATCGGAGTTGACTTC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR005225 |
| DBxref | InterPro:IPR001806 |
| DBxref | PFAM:PF08477 |
| DBxref | PFAM:PF00071 |
| DBxref | PFAM:PF01926 |
| DBxref | PFAM:PF00025 |
| Product | GTP-binding protein of the rab |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An09 | supercontig | An09:1562482..1563357 - |
|
