You are here

Home

CBS51388_006407-T1, CBS51388_006407-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006407-T1
Unique NameCBS51388_006407-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An09:1568477..1569639+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006407-T1 ID=CBS51388_006407-T1|Name=CBS51388_006407-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1163bp|location=Sequence derived from alignment at An09:1568477..1569639+ (Aspergillus niger CBS 513.88)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGTAGGGTGTACTTTCAA
GCCGAGTTAGTCTCAGTTTTGATAACGGTTCGAGCTGAGTTCCATGTCTT
CGCGCTTGCAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAAT
CCGTCATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAG
ATCTCCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTC
GTGAGGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGG
CCTCAAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTA
CTGAGCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGT
CTTCCTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTGTA
TGTCTTTTCCACGGTAGCGTCGTACACACTCAATGATAAGGTGGACTAAT
TTGTCTTGCAACAGCCATACTCCAAGCCATGGCACCCGTGAGATCTTCGT
CATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAACAA
TTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTTGCT
GCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGGCGA
CGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACCTTG
TGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCCACA
AGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTACCC
TTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGTGCT
CACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGT
GGTCTTACTTTGA
back to top

Coding sequence (CDS) from alignment at An09:1568477..1569639+

>CBS51388_006407-T1 ID=CBS51388_006407-T1|Name=CBS51388_006407-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3852bp|location=Sequence derived from alignment at An09:1568477..1569639+ (Aspergillus niger CBS 513.88)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGA
CTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTG
TCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTC
CTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCA
TCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTC
AGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACT
GCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAA
TGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATC
TTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCA
AACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCC
TTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGG
GGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGA
CCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGT
CCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCT
TACCCTTCACTTTCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGT
GGTCTTACTTTGAATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCT
CTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACT
ACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATG
GGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAA
TCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTC
CTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGTCATCTCATCTT
GATTATAGATCTGTCACAATCTATGACCGAGAAAGATCTCCGACCGACAC
GTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTC
GAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACT
GGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGTG
CCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAA
AATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGG
CACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCG
GTGATATTCACCAAACAATTACTACGCTTATAAATGATAAAATACGTGTT
GGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGG
CAAGACTAACGGGGGCGACGATACCACATACGGTGTAGCACTCAATGAAC
AACATTTCCGTGACCTTGTGATGAATGTGACAACACCACCAGCCACATAC
TCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACG
AACCGTTGAGGCTTACCCTTCACTTTCAAGGTTTGTGGTCTCCCTGCCGA
GTGTCCTTCCTGTGGTCTTACTTTGAATGGTCGATTCCGATGAAGAGTAC
ATAGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTC
TCGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTG
GAGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGT
GCCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAA
AAGGAAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCC
GTCATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGAT
CTCCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGT
GAGGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCC
TCAAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACT
GAGCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCT
TCCTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATA
CTCCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTT
TCCTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGA
TAAAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTC
GCGAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTA
GCACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACC
ACCAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGG
GTTTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTCAAGGTTTGTG
GTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGAATGGTCGATTC
CGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATGAAAACAATC
TTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGG
AGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAAC
CTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTC
TCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGACTCCTTTACAA
CGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTGTCACAATCTAT
GACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCTTACGGTATG
CACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATCTCTCAACTC
GGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAGTGATATGAG
TGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGCGAGACCAGG
ATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGT
GCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTTCGTCATTTT
TGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAACAATTACTA
CGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAA
GTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGGCGACGATAC
CACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACCTTGTGATGA
ATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCCACAAGCTCT
CTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTACCCTTCACT
TTCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTT
GA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_006407CBS51388_006407Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006407-T1.exon1CBS51388_006407-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_006407-T1.exon2CBS51388_006407-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_006407-T1.exon3CBS51388_006407-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_006407-T1.exon4CBS51388_006407-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006407-T1.cdsCBS51388_006407-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006407-T1CBS51388_006407-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR007198
DBxrefInterPro:IPR012170
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR002035
DBxrefPFAM:PF13519
DBxrefPFAM:PF00092
DBxrefPFAM:PF04056
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An09supercontigAn09:1568477..1569639 +
Powered by Drupal