You are here

Home

CBS51388_006826-T1, CBS51388_006826-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006826-T1
Unique NameCBS51388_006826-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An11:983885..985426+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006826-T1 ID=CBS51388_006826-T1|Name=CBS51388_006826-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1542bp|location=Sequence derived from alignment at An11:983885..985426+ (Aspergillus niger CBS 513.88)
ATGATCAGATGTCCCATATGCCAGAAACACGTCCTTCTTTCAGAAATCAA
CGAACACCTCGATTCTGGCTGTCAAAAATTCATTGCAATTACCCACCTAC
AAAGTACGATATCATCTACCCTAAGCGAAAATGACTGCAACTATCTACAA
CCAACGGAACAACGTCAGTCGAAAGAGAATCGCAAGTCAACAGGACCATC
CGCTAGTGTTACCGGAAGCTCAAAGAGAGCGGTCTCTCAACCGGATTCCA
ATACCACACGCAAGAAGGCACATGCGGGATTAGCAACGGAGCAATTACAT
CTTCGGCATGCACCTCTAGCTGAGCAAGTTCGGCCACGATGCTTTGATGA
TATCGTCGGTCAGAAATCCTTGATCGGGCCAAATGGTACACTCAGGCGGT
TGATTGAACAAGATGAGCTTCCGAACCTGATTTTATGGGGGCCCCCAGGA
AGTGGTAAAACTACAATTGCCAGAATCATCGGGCCAATGATGAGGAGAAA
GGTCTACGAGATTAGTAGCTTGACTACAATAACGACAGAGTACAGAGACA
TCGTCACCAAGGCTACACACGATGGTCGGAATAAATCCATCATATTCTGT
GATGAGATACATCGACTCACGCGTCCACAACAAGATATTTTTCTCGATGC
TATGCGAAGGAATAAAATCACTCTCATCGGTGCGACGACAGAGAACCCAT
CATTGAATATTCACCATACACTTGTCTACAAATGCAGGGTCTTCACTGTC
GCAAAGCCAACTACCACTGATTTGGCCACTATCCTTCGTCGTTCATTGAT
ATCACAAACCCACCTAAAGTCATCCCCACTTCTGGATGATGAATTCCTTC
AATACATAGCTGGATTCGCTGATGGGGACAGTAGAACCGCACTGAACGTT
CTGGAGATAGCTACCGATCTCTGCAGACGACCAAATATGACCAAGGAGAA
GCTGAAGTATTCATTAACCAAGAGCTTACTCTACGACCGTTCGGGCGACC
AGCACTATGACACCATTTCAGCACTCCACAAGTCAATTCGAGGCAGTGAT
CCCGATGCTGCGCTATATTACCTTGTACGAATGCTCCAGTCAGGCGAGAA
TCCTTTGTTCATCGCTCGCCGGCTTATCGTGGCGACGTCGGAGGACATCG
GGCTGGCGAATAATGTGTTGCAAACATATGCAACCTCCATCTACTTGATG
ATTGAGAAGCTAGGGATCAATGACGCACAGTCTGCTTTGGCTCAACTGGT
GATAACAATGTGTTTGTCGAAGAAGAGCACTCGATCTTATCGCGGGCTTA
ATAATGCCCTTGCTGCAGTGAAGGAGCCTGGGATGGGCGATCTTCCAATT
CCTTTTCACATCTTGGATCGTAGACCCGAGCTTCTGAGAGAGGCTGACCT
GGTCGTGACTACCGACTCCCAACAAAGTCAGAAAAGGCTGCCATCTACCC
AGGGGTTTCTTCCGCATGCTCTCGAAGGACGGAAGTTTCTGGAAGATACT
GATTTTCTGTTCAAACGAGATCCAGACCTAAGTTATGGGTGA
back to top

Coding sequence (CDS) from alignment at An11:983885..985426+

>CBS51388_006826-T1 ID=CBS51388_006826-T1|Name=CBS51388_006826-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1542bp|location=Sequence derived from alignment at An11:983885..985426+ (Aspergillus niger CBS 513.88)
ATGATCAGATGTCCCATATGCCAGAAACACGTCCTTCTTTCAGAAATCAA
CGAACACCTCGATTCTGGCTGTCAAAAATTCATTGCAATTACCCACCTAC
AAAGTACGATATCATCTACCCTAAGCGAAAATGACTGCAACTATCTACAA
CCAACGGAACAACGTCAGTCGAAAGAGAATCGCAAGTCAACAGGACCATC
CGCTAGTGTTACCGGAAGCTCAAAGAGAGCGGTCTCTCAACCGGATTCCA
ATACCACACGCAAGAAGGCACATGCGGGATTAGCAACGGAGCAATTACAT
CTTCGGCATGCACCTCTAGCTGAGCAAGTTCGGCCACGATGCTTTGATGA
TATCGTCGGTCAGAAATCCTTGATCGGGCCAAATGGTACACTCAGGCGGT
TGATTGAACAAGATGAGCTTCCGAACCTGATTTTATGGGGGCCCCCAGGA
AGTGGTAAAACTACAATTGCCAGAATCATCGGGCCAATGATGAGGAGAAA
GGTCTACGAGATTAGTAGCTTGACTACAATAACGACAGAGTACAGAGACA
TCGTCACCAAGGCTACACACGATGGTCGGAATAAATCCATCATATTCTGT
GATGAGATACATCGACTCACGCGTCCACAACAAGATATTTTTCTCGATGC
TATGCGAAGGAATAAAATCACTCTCATCGGTGCGACGACAGAGAACCCAT
CATTGAATATTCACCATACACTTGTCTACAAATGCAGGGTCTTCACTGTC
GCAAAGCCAACTACCACTGATTTGGCCACTATCCTTCGTCGTTCATTGAT
ATCACAAACCCACCTAAAGTCATCCCCACTTCTGGATGATGAATTCCTTC
AATACATAGCTGGATTCGCTGATGGGGACAGTAGAACCGCACTGAACGTT
CTGGAGATAGCTACCGATCTCTGCAGACGACCAAATATGACCAAGGAGAA
GCTGAAGTATTCATTAACCAAGAGCTTACTCTACGACCGTTCGGGCGACC
AGCACTATGACACCATTTCAGCACTCCACAAGTCAATTCGAGGCAGTGAT
CCCGATGCTGCGCTATATTACCTTGTACGAATGCTCCAGTCAGGCGAGAA
TCCTTTGTTCATCGCTCGCCGGCTTATCGTGGCGACGTCGGAGGACATCG
GGCTGGCGAATAATGTGTTGCAAACATATGCAACCTCCATCTACTTGATG
ATTGAGAAGCTAGGGATCAATGACGCACAGTCTGCTTTGGCTCAACTGGT
GATAACAATGTGTTTGTCGAAGAAGAGCACTCGATCTTATCGCGGGCTTA
ATAATGCCCTTGCTGCAGTGAAGGAGCCTGGGATGGGCGATCTTCCAATT
CCTTTTCACATCTTGGATCGTAGACCCGAGCTTCTGAGAGAGGCTGACCT
GGTCGTGACTACCGACTCCCAACAAAGTCAGAAAAGGCTGCCATCTACCC
AGGGGTTTCTTCCGCATGCTCTCGAAGGACGGAAGTTTCTGGAAGATACT
GATTTTCTGTTCAAACGAGATCCAGACCTAAGTTATGGGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0009378four-way junction helicase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006310DNA recombination
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_006826CBS51388_006826Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006826-T1.exon1CBS51388_006826-T1.exon1Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006826-T1.cdsCBS51388_006826-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006826-T1CBS51388_006826-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_11.5
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR008921
DBxrefInterPro:IPR032423
DBxrefInterPro:IPR008824
DBxrefInterPro:IPR021886
DBxrefInterPro:IPR003593
DBxrefInterPro:IPR006642
DBxrefPFAM:PF05496
DBxrefPFAM:PF12002
DBxrefPFAM:PF16193
DBxrefPFAM:PF07728
DBxrefPFAM:PF00004
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An11supercontigAn11:983885..985426 +
Powered by Drupal