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Sequences
The following sequences are available for this feature:
mRNA from alignment at An11:993119..994758- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006830-T1 ID=CBS51388_006830-T1|Name=CBS51388_006830-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1640bp|location=Sequence derived from alignment at An11:993119..994758- (Aspergillus niger CBS 513.88)
ATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGCTTTG
CGTGTCTAGCAAAACTCCTTCCGCGCCTACGATCTCTGCATATCCGAAAT
CTCCAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAGCAAT
GTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTCTTGC
CGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCGGGTG
ACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACATCGAT
TTTGCCATCTGGGGCAACATCACTTTCAAAAAGGATATCGATCTCTGGAC
AACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTTTTCTGGCGAT
TCGGAGGCAATAACGTGAACATCTACGGCGATGGGAAGGGGGTGATTGAT
GGTGAATATTTTTTTTCTTGGTGCTGGATTTGCTAGGGAAAGATTAATGA
CCTTGATGTTCTAATATAGGAGCTGGTCAATACTGGTGGAGTGCGATGGC
TGAGGATTCCAGTGTCATGCGTCCTTGCCTCCTGGGCACAGACGGACTGC
ATCATGCCACCATTTCTGGGCTCACGATGCTCAACTCCCCAAATTGGTTC
AACCTGATTGCAAACTCCACGGACATCCTCATCAGTAATATGACAATGTT
GGTGGAGAGTGAGATATCGGATGCTCCAGCCAAGGTGCGACTTATAATAT
CACCCCTGTTTCCATCTGCTATAGCCTACTGCTACCTGAACCTGACTTGT
ACTGTGACTAGAACACAGATGGCTGGGACATCTACCGCAGCTCGAATATC
GTGATCCAAGACTCAAGAATTGTCAACACGGACGGTAAGCCATGGCATTC
CGTAACTGTATTCTCTGAAACGTCACTCATGGTCTCCGCCTTAGACTGTG
TATCGTTCAAACCAAACTCCACCCAGATTGTCATCCAAAATCTCGACTGC
ACTGGTTCCCACGGTATTTCTGTCGGCAGCTTGGGTCAATACCAAGGGGA
AACGGATATCGTCGAAGATCTGTACATCTATAACATCTCCATGACAGATG
CATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTGCTGATACG
TCAGGATCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTA
TGAACACATGCAAAGCGAGAATAACGATCACATCATTTCGGTCTCGCAGT
GCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTGTACGTACT
TACAAGCTCCTGATAGGCAAAAGATTCAATAGCAGCAAAAAACTGATCAG
TCTTTCAAAGTCAAAACTCGTGATTGAGGATGTACTTTTCAAGGACTTTA
AGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGACATGT
AGTAGTCCGGATGTAGGTTTCTTTGCTGCAACTTTGCATTGCAGATTGAC
CCACGGCCACTAACAGCTGCTAGGTCTGCCATAATATCACTGTCCAAGAC
ATCAATGTGACTCCACCCAGTGGTGACTCTCCCACTTTCACCTGCAACAA
TATGGGGAATTCGAATTTGGAGGACATTACGTGTGCCTGA back to topCoding sequence (CDS) from alignment at An11:993119..994758- >CBS51388_006830-T1 ID=CBS51388_006830-T1|Name=CBS51388_006830-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=7830bp|location=Sequence derived from alignment at An11:993119..994758- (Aspergillus niger CBS 513.88)
GTCTGCCATAATATCACTGTCCAAGACATCAATGTGACTCCACCCAGTGG
TGACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATTTGGAGG
ACATTACGTGTGCCTGATCAAAACTCGTGATTGAGGATGTACTTTTCAAG
GACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTT
GACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCAAACTCCACCCA
GATTGTCATCCAAAATCTCGACTGCACTGGTTCCCACGGTATTTCTGTCG
GCAGCTTGGGTCAATACCAAGGGGAAACGGATATCGTCGAAGATCTGTAC
ATCTATAACATCTCCATGACAGATGCATCAGATGTGGCCCGAATCAAGGT
CTGGCCTGGTGTTCCTGCTGATACGTCAGGATCAACCAGCGGTGGAGGAC
TAGGCCGCGTCCGCAACGTTACCTATGAACACATGCAAAGCGAGAATAAC
GATCACATCATTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAAACGAT
GTGCGATTCATATCCTAACACAGATGGCTGGGACATCTACCGCAGCTCGA
ATATCGTGATCCAAGACTCAAGAATTGTCAACACGGACGGAGCTGGTCAA
TACTGGTGGAGTGCGATGGCTGAGGATTCCAGTGTCATGCGTCCTTGCCT
CCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGGCTCACGATGC
TCAACTCCCCAAATTGGTTCAACCTGATTGCAAACTCCACGGACATCCTC
ATCAGTAATATGACAATGTTGGTGGAGAGTGAGATATCGGATGCTCCAGC
CAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGC
TTTGCGTGTCTAGCAAAACTCCTTCCGCGCCTACGATCTCTGCATATCCG
AAATCTCCAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAG
CAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTC
TTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCG
GGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACAT
CGATTTTGCCATCTGGGGCAACATCACTTTCAAAAAGGATATCGATCTCT
GGACAACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTTTTCTGG
CGATTCGGAGGCAATAACGTGAACATCTACGGCGATGGGAAGGGGGTGAT
TGATGGTCTGCCATAATATCACTGTCCAAGACATCAATGTGACTCCACCC
AGTGGTGACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATTT
GGAGGACATTACGTGTGCCTGATCAAAACTCGTGATTGAGGATGTACTTT
TCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGA
GAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCAAACTCC
ACCCAGATTGTCATCCAAAATCTCGACTGCACTGGTTCCCACGGTATTTC
TGTCGGCAGCTTGGGTCAATACCAAGGGGAAACGGATATCGTCGAAGATC
TGTACATCTATAACATCTCCATGACAGATGCATCAGATGTGGCCCGAATC
AAGGTCTGGCCTGGTGTTCCTGCTGATACGTCAGGATCAACCAGCGGTGG
AGGACTAGGCCGCGTCCGCAACGTTACCTATGAACACATGCAAAGCGAGA
ATAACGATCACATCATTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAA
ACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACATCTACCGCAG
CTCGAATATCGTGATCCAAGACTCAAGAATTGTCAACACGGACGGAGCTG
GTCAATACTGGTGGAGTGCGATGGCTGAGGATTCCAGTGTCATGCGTCCT
TGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGGCTCAC
GATGCTCAACTCCCCAAATTGGTTCAACCTGATTGCAAACTCCACGGACA
TCCTCATCAGTAATATGACAATGTTGGTGGAGAGTGAGATATCGGATGCT
CCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCC
CGCGCTTTGCGTGTCTAGCAAAACTCCTTCCGCGCCTACGATCTCTGCAT
ATCCGAAATCTCCAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGC
ACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGG
TATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTAC
CACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAAC
AACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAAAGGATATCGA
TCTCTGGACAACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTTT
TCTGGCGATTCGGAGGCAATAACGTGAACATCTACGGCGATGGGAAGGGG
GTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATCAATGTGACTC
CACCCAGTGGTGACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCG
AATTTGGAGGACATTACGTGTGCCTGATCAAAACTCGTGATTGAGGATGT
ACTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGA
TTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAAACCAA
ACTCCACCCAGATTGTCATCCAAAATCTCGACTGCACTGGTTCCCACGGT
ATTTCTGTCGGCAGCTTGGGTCAATACCAAGGGGAAACGGATATCGTCGA
AGATCTGTACATCTATAACATCTCCATGACAGATGCATCAGATGTGGCCC
GAATCAAGGTCTGGCCTGGTGTTCCTGCTGATACGTCAGGATCAACCAGC
GGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAACACATGCAAAG
CGAGAATAACGATCACATCATTTCGGTCTCGCAGTGCTATGAGTCGAAGA
ACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACATCTAC
CGCAGCTCGAATATCGTGATCCAAGACTCAAGAATTGTCAACACGGACGG
AGCTGGTCAATACTGGTGGAGTGCGATGGCTGAGGATTCCAGTGTCATGC
GTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTTCTGGG
CTCACGATGCTCAACTCCCCAAATTGGTTCAACCTGATTGCAAACTCCAC
GGACATCCTCATCAGTAATATGACAATGTTGGTGGAGAGTGAGATATCGG
ATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTATTACT
CTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCGCGCCTACGATCTC
TGCATATCCGAAATCTCCAGGGAACTTCAAGCCCGCCTCTGGACGCCAGA
ACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCC
CCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTT
CCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTC
TAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAAAGGAT
ATCGATCTCTGGACAACCCAGGCATTTCAATACACATTCCAGACTGCGAG
TCTTTTCTGGCGATTCGGAGGCAATAACGTGAACATCTACGGCGATGGGA
AGGGGGTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATCAATGT
GACTCCACCCAGTGGTGACTCTCCCACTTTCACCTGCAACAATATGGGGA
ATTCGAATTTGGAGGACATTACGTGTGCCTGATCAAAACTCGTGATTGAG
GATGTACTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTACGATCC
TGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCGTTCAA
ACCAAACTCCACCCAGATTGTCATCCAAAATCTCGACTGCACTGGTTCCC
ACGGTATTTCTGTCGGCAGCTTGGGTCAATACCAAGGGGAAACGGATATC
GTCGAAGATCTGTACATCTATAACATCTCCATGACAGATGCATCAGATGT
GGCCCGAATCAAGGTCTGGCCTGGTGTTCCTGCTGATACGTCAGGATCAA
CCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAACACATG
CAAAGCGAGAATAACGATCACATCATTTCGGTCTCGCAGTGCTATGAGTC
GAAGAACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTGGGACA
TCTACCGCAGCTCGAATATCGTGATCCAAGACTCAAGAATTGTCAACACG
GACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAGGATTCCAGTGT
CATGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTT
CTGGGCTCACGATGCTCAACTCCCCAAATTGGTTCAACCTGATTGCAAAC
TCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGGAGAGTGAGAT
ATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCTATTTA
TTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCGCGCCTACG
ATCTCTGCATATCCGAAATCTCCAGGGAACTTCAAGCCCGCCTCTGGACG
CCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATG
CTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACC
GTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCAC
ATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAA
AGGATATCGATCTCTGGACAACCCAGGCATTTCAATACACATTCCAGACT
GCGAGTCTTTTCTGGCGATTCGGAGGCAATAACGTGAACATCTACGGCGA
TGGGAAGGGGGTGATTGATGGTCTGCCATAATATCACTGTCCAAGACATC
AATGTGACTCCACCCAGTGGTGACTCTCCCACTTTCACCTGCAACAATAT
GGGGAATTCGAATTTGGAGGACATTACGTGTGCCTGATCAAAACTCGTGA
TTGAGGATGTACTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTAC
GATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTGTATCG
TTCAAACCAAACTCCACCCAGATTGTCATCCAAAATCTCGACTGCACTGG
TTCCCACGGTATTTCTGTCGGCAGCTTGGGTCAATACCAAGGGGAAACGG
ATATCGTCGAAGATCTGTACATCTATAACATCTCCATGACAGATGCATCA
GATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTGCTGATACGTCAGG
ATCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAAC
ACATGCAAAGCGAGAATAACGATCACATCATTTCGGTCTCGCAGTGCTAT
GAGTCGAAGAACCAAACGATGTGCGATTCATATCCTAACACAGATGGCTG
GGACATCTACCGCAGCTCGAATATCGTGATCCAAGACTCAAGAATTGTCA
ACACGGACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAGGATTCC
AGTGTCATGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCAC
CATTTCTGGGCTCACGATGCTCAACTCCCCAAATTGGTTCAACCTGATTG
CAAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGGAGAGT
GAGATATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTGACTCT
ATTTATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCGCGC
CTACGATCTCTGCATATCCGAAATCTCCAGGGAACTTCAAGCCCGCCTCT
GGACGCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAAC
AGATGCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGG
GCACCGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGAT
CTCACATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTT
CAAAAAGGATATCGATCTCTGGACAACCCAGGCATTTCAATACACATTCC
AGACTGCGAGTCTTTTCTGGCGATTCGGAGGCAATAACGTGAACATCTAC
GGCGATGGGAAGGGGGTGATTGATGGTCTGCCATAATATCACTGTCCAAG
ACATCAATGTGACTCCACCCAGTGGTGACTCTCCCACTTTCACCTGCAAC
AATATGGGGAATTCGAATTTGGAGGACATTACGTGTGCCTGATCAAAACT
CGTGATTGAGGATGTACTTTTCAAGGACTTTAAGGGAACGACATCTAAGA
AGTACGATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATACTGTG
TATCGTTCAAACCAAACTCCACCCAGATTGTCATCCAAAATCTCGACTGC
ACTGGTTCCCACGGTATTTCTGTCGGCAGCTTGGGTCAATACCAAGGGGA
AACGGATATCGTCGAAGATCTGTACATCTATAACATCTCCATGACAGATG
CATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTGCTGATACG
TCAGGATCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTA
TGAACACATGCAAAGCGAGAATAACGATCACATCATTTCGGTCTCGCAGT
GCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTAACACAGAT
GGCTGGGACATCTACCGCAGCTCGAATATCGTGATCCAAGACTCAAGAAT
TGTCAACACGGACGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAGG
ATTCCAGTGTCATGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCAT
GCCACCATTTCTGGGCTCACGATGCTCAACTCCCCAAATTGGTTCAACCT
GATTGCAAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGG
AGAGTGAGATATCGGATGCTCCAGCCAAGATGAAGCTCCCCATCCTAGTG
ACTCTATTTATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTC
CGCGCCTACGATCTCTGCATATCCGAAATCTCCAGGGAACTTCAAGCCCG
CCTCTGGACGCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAAC
CAAACAGATGCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAA
TGGGGGCACCGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCAC
TGGATCTCACATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATC
ACTTTCAAAAAGGATATCGATCTCTGGACAACCCAGGCATTTCAATACAC
ATTCCAGACTGCGAGTCTTTTCTGGCGATTCGGAGGCAATAACGTGAACA
TCTACGGCGATGGGAAGGGGGTGATTGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0005975 | carbohydrate metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-19) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR012334 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| An11 | supercontig | An11:993119..994758 - |
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