You are here

Home

CBS51388_006869-T1, CBS51388_006869-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006869-T1
Unique NameCBS51388_006869-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An11:1117604..1119844-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006869-T1 ID=CBS51388_006869-T1|Name=CBS51388_006869-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2241bp|location=Sequence derived from alignment at An11:1117604..1119844- (Aspergillus niger CBS 513.88)
ATGGCCGACCAGACCCCCGATTCCTGGGAGGATGAGCTCTCCAGACAGAC
TGAGGGCGTCCGTCTGAACCCCAACGCACAAGGCCGCCCTCAGCCTCAGG
CTCCTTCTTTCCACCCTGGTGCTGCCACTTTCACCCCCGGCGCTGCTTCC
TTCGTCCCTGGACAGGCCTACCAGCCCTACGGCGGCGGTTTCCCGCAATA
TGGCCAGTACGGCCAGCAGGCTTACGGTGGATACCCTTATGACCAGCAGC
AGCAGGCCTATGCCCAATACGGCGCCTACGCTCAGCAACCTGGTGGCTTT
AACAACAACCAGATCTACAACCAGCAATACGGTGGTTACCAGCAGCAGCA
ACAGCAGCCCCGTCAAGCTGCCGCCCCCGCTGCCGCCCAGCCCGCTCAGC
CCGCCCCGAAGCCTGCCGCAAGCAACGCTGCTCCCCCCAAGGCCAAGGTC
CTGTCTATTGGCGGCGCCAGCAACTCCCCCGCCGCTCCCAAGACCAAGGT
TCTTTCCATCGGCACCCCCTCCCCCGCTCCCACCTCGAGCACGCCTTCTT
CGACCTCCGGTGCCGCTACGCCTGGAGATACCAAGGGTGCTGCCGCTGTT
GAGGCGGCCGCTAAGGTGACGGCTTCCAAGGCCATCGAGAAGACTGAGAA
GAAGGCCGACGCGAAGGCTGCCGCCAGCGGCAAGTCGTCCCCTACCCCCT
CGGGTCGCTCCAGCCCCGGAAGATCCAGCCCTGCTCGCGGCGAGGCTGCC
AAGGCTGCTCGTAACGCCGACGCCGTCGCCATGGAGCAACAAGCCGATGT
CGATGAGGCTACTTTGAAGGAAATCTACGGTGAGAAGAAGGAGCACGTCA
ACATTGTCTTCATCGGTCACGTCGATGCCGGAAAGTCTACTTTGGGTGGA
TCCATCCTTTACGTGACCGGCATGGTGGACGAGCGTACTTTGGAGAAGTA
CAAGAGAGATGCCAAGGAGGCTGGTCGTGAGACCTGGTACCTCTCTTGGG
CCTTGGATTTGACCAACGAGGAACGTGCCAAGGGTAAGACTGTTGAGGTT
GGTCGTGCTCACTTCCAGCTCCCCGTCAAGGGAGCCGACGGCAGCACCAT
CACGAGACATTTCTCCATCCTGGATGCTCCTGGTCACAAGTCTTATGTTC
ACCACATGATCGGTGGTGCTTCCCAGGCCGATGTTGGTGTCCTTGTCATC
TCCGCGCGTAAGGGTGAATACGAAACCGGTTTCGAGAAGGGTGGTCAGAC
TCGTGAGCACGCCCTGCTTGCAAGAAACACCGGTGTGAAGACCCTTATCG
TCGCTGTCAACAAGATGGACGACCCTACCGTTGAGTGGAGCAAGGCTCGT
TTCGACGAGTGTACCGTCAAGGTGGGCAAGTACTTGGAGAACCTCGGTTA
CAAGAAGAGCGATCTCTTCTTCATGCCCATCTCTGCCCAGAGGACCACGG
GTATCAAGGACCGCGTCCCCACGGACCTTGCTCCCTGGTATGGCGGTCCC
TCCCTTTTGGAGTTCCTGTCGGAGATGAAGGTGCCCGAGCGTAAGATCAA
CGCACCTTTCATGATGCCCATCAGTGCCAAGTACCGTGACATGGGTACCA
TGGTCGAGGGTCGCATTGAGTCTGGTGTGCTTAAGAAGAACGGCAGCTGC
ATCATGATGCCCAACCGCACCAAGGTCGAAATTGCCGCTCTCTATGGTGA
GACTGAAGACGAAATCCCCACCGCTACCTGCGGTGACCAGGTCCGTCTTC
GTCTCCGTGGTGTGGAAGAAGAAGATATCTTGCCCGGATTCGTGCTCTGC
TCCCCCAAGCGTCTGGTGAACTGTGTCAAGACTTTCGAGGCCAAGATCAG
GATTCTTGACCTGAAGAGCATTCTCACGGCTGGTTACAACTGCGTGATGC
ACGTGCACTCTGCTGTCGAAGAAGTTACTGTTGCAGCACTTCTGCACAAG
TGCGAGCCCGGCACTGGACGTCGGAGCAAGCGCCCCCCTCCTTTCGCTAG
CAAGGGTCAGACCATCATCGCTCGTCTCGAGGTGACGAGCACTGCTGGTG
CCGTTTGTGTCGAGCGCTTTGAGGACTACAACCAGATGGGTCGGTTTACT
CTGCGTGATCAGGTAAGCAGTCATTTCCAAAGTGCCATTATTGAACAATG
CTAACATACACAAAACCAGGGTCAAACCGTTGCCATTGGTATGATTACCA
AGCTCATCTCTGCCGAAGAGGTGGCGCAGGCGCAGGCGTAA
back to top

Coding sequence (CDS) from alignment at An11:1117604..1119844-

>CBS51388_006869-T1 ID=CBS51388_006869-T1|Name=CBS51388_006869-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4368bp|location=Sequence derived from alignment at An11:1117604..1119844- (Aspergillus niger CBS 513.88)
GGTCAAACCGTTGCCATTGGTATGATTACCAAGCTCATCTCTGCCGAAGA
GGTGGCGCAGGCGCAGGCGTAAATGGCCGACCAGACCCCCGATTCCTGGG
AGGATGAGCTCTCCAGACAGACTGAGGGCGTCCGTCTGAACCCCAACGCA
CAAGGCCGCCCTCAGCCTCAGGCTCCTTCTTTCCACCCTGGTGCTGCCAC
TTTCACCCCCGGCGCTGCTTCCTTCGTCCCTGGACAGGCCTACCAGCCCT
ACGGCGGCGGTTTCCCGCAATATGGCCAGTACGGCCAGCAGGCTTACGGT
GGATACCCTTATGACCAGCAGCAGCAGGCCTATGCCCAATACGGCGCCTA
CGCTCAGCAACCTGGTGGCTTTAACAACAACCAGATCTACAACCAGCAAT
ACGGTGGTTACCAGCAGCAGCAACAGCAGCCCCGTCAAGCTGCCGCCCCC
GCTGCCGCCCAGCCCGCTCAGCCCGCCCCGAAGCCTGCCGCAAGCAACGC
TGCTCCCCCCAAGGCCAAGGTCCTGTCTATTGGCGGCGCCAGCAACTCCC
CCGCCGCTCCCAAGACCAAGGTTCTTTCCATCGGCACCCCCTCCCCCGCT
CCCACCTCGAGCACGCCTTCTTCGACCTCCGGTGCCGCTACGCCTGGAGA
TACCAAGGGTGCTGCCGCTGTTGAGGCGGCCGCTAAGGTGACGGCTTCCA
AGGCCATCGAGAAGACTGAGAAGAAGGCCGACGCGAAGGCTGCCGCCAGC
GGCAAGTCGTCCCCTACCCCCTCGGGTCGCTCCAGCCCCGGAAGATCCAG
CCCTGCTCGCGGCGAGGCTGCCAAGGCTGCTCGTAACGCCGACGCCGTCG
CCATGGAGCAACAAGCCGATGTCGATGAGGCTACTTTGAAGGAAATCTAC
GGTGAGAAGAAGGAGCACGTCAACATTGTCTTCATCGGTCACGTCGATGC
CGGAAAGTCTACTTTGGGTGGATCCATCCTTTACGTGACCGGCATGGTGG
ACGAGCGTACTTTGGAGAAGTACAAGAGAGATGCCAAGGAGGCTGGTCGT
GAGACCTGGTACCTCTCTTGGGCCTTGGATTTGACCAACGAGGAACGTGC
CAAGGGTAAGACTGTTGAGGTTGGTCGTGCTCACTTCCAGCTCCCCGTCA
AGGGAGCCGACGGCAGCACCATCACGAGACATTTCTCCATCCTGGATGCT
CCTGGTCACAAGTCTTATGTTCACCACATGATCGGTGGTGCTTCCCAGGC
CGATGTTGGTGTCCTTGTCATCTCCGCGCGTAAGGGTGAATACGAAACCG
GTTTCGAGAAGGGTGGTCAGACTCGTGAGCACGCCCTGCTTGCAAGAAAC
ACCGGTGTGAAGACCCTTATCGTCGCTGTCAACAAGATGGACGACCCTAC
CGTTGAGTGGAGCAAGGCTCGTTTCGACGAGTGTACCGTCAAGGTGGGCA
AGTACTTGGAGAACCTCGGTTACAAGAAGAGCGATCTCTTCTTCATGCCC
ATCTCTGCCCAGAGGACCACGGGTATCAAGGACCGCGTCCCCACGGACCT
TGCTCCCTGGTATGGCGGTCCCTCCCTTTTGGAGTTCCTGTCGGAGATGA
AGGTGCCCGAGCGTAAGATCAACGCACCTTTCATGATGCCCATCAGTGCC
AAGTACCGTGACATGGGTACCATGGTCGAGGGTCGCATTGAGTCTGGTGT
GCTTAAGAAGAACGGCAGCTGCATCATGATGCCCAACCGCACCAAGGTCG
AAATTGCCGCTCTCTATGGTGAGACTGAAGACGAAATCCCCACCGCTACC
TGCGGTGACCAGGTCCGTCTTCGTCTCCGTGGTGTGGAAGAAGAAGATAT
CTTGCCCGGATTCGTGCTCTGCTCCCCCAAGCGTCTGGTGAACTGTGTCA
AGACTTTCGAGGCCAAGATCAGGATTCTTGACCTGAAGAGCATTCTCACG
GCTGGTTACAACTGCGTGATGCACGTGCACTCTGCTGTCGAAGAAGTTAC
TGTTGCAGCACTTCTGCACAAGTGCGAGCCCGGCACTGGACGTCGGAGCA
AGCGCCCCCCTCCTTTCGCTAGCAAGGGTCAGACCATCATCGCTCGTCTC
GAGGTGACGAGCACTGCTGGTGCCGTTTGTGTCGAGCGCTTTGAGGACTA
CAACCAGATGGGTCGGTTTACTCTGCGTGATCAGGGTCAAACCGTTGCCA
TTGGTATGATTACCAAGCTCATCTCTGCCGAAGAGGTGGCGCAGGCGCAG
GCGTAAATGGCCGACCAGACCCCCGATTCCTGGGAGGATGAGCTCTCCAG
ACAGACTGAGGGCGTCCGTCTGAACCCCAACGCACAAGGCCGCCCTCAGC
CTCAGGCTCCTTCTTTCCACCCTGGTGCTGCCACTTTCACCCCCGGCGCT
GCTTCCTTCGTCCCTGGACAGGCCTACCAGCCCTACGGCGGCGGTTTCCC
GCAATATGGCCAGTACGGCCAGCAGGCTTACGGTGGATACCCTTATGACC
AGCAGCAGCAGGCCTATGCCCAATACGGCGCCTACGCTCAGCAACCTGGT
GGCTTTAACAACAACCAGATCTACAACCAGCAATACGGTGGTTACCAGCA
GCAGCAACAGCAGCCCCGTCAAGCTGCCGCCCCCGCTGCCGCCCAGCCCG
CTCAGCCCGCCCCGAAGCCTGCCGCAAGCAACGCTGCTCCCCCCAAGGCC
AAGGTCCTGTCTATTGGCGGCGCCAGCAACTCCCCCGCCGCTCCCAAGAC
CAAGGTTCTTTCCATCGGCACCCCCTCCCCCGCTCCCACCTCGAGCACGC
CTTCTTCGACCTCCGGTGCCGCTACGCCTGGAGATACCAAGGGTGCTGCC
GCTGTTGAGGCGGCCGCTAAGGTGACGGCTTCCAAGGCCATCGAGAAGAC
TGAGAAGAAGGCCGACGCGAAGGCTGCCGCCAGCGGCAAGTCGTCCCCTA
CCCCCTCGGGTCGCTCCAGCCCCGGAAGATCCAGCCCTGCTCGCGGCGAG
GCTGCCAAGGCTGCTCGTAACGCCGACGCCGTCGCCATGGAGCAACAAGC
CGATGTCGATGAGGCTACTTTGAAGGAAATCTACGGTGAGAAGAAGGAGC
ACGTCAACATTGTCTTCATCGGTCACGTCGATGCCGGAAAGTCTACTTTG
GGTGGATCCATCCTTTACGTGACCGGCATGGTGGACGAGCGTACTTTGGA
GAAGTACAAGAGAGATGCCAAGGAGGCTGGTCGTGAGACCTGGTACCTCT
CTTGGGCCTTGGATTTGACCAACGAGGAACGTGCCAAGGGTAAGACTGTT
GAGGTTGGTCGTGCTCACTTCCAGCTCCCCGTCAAGGGAGCCGACGGCAG
CACCATCACGAGACATTTCTCCATCCTGGATGCTCCTGGTCACAAGTCTT
ATGTTCACCACATGATCGGTGGTGCTTCCCAGGCCGATGTTGGTGTCCTT
GTCATCTCCGCGCGTAAGGGTGAATACGAAACCGGTTTCGAGAAGGGTGG
TCAGACTCGTGAGCACGCCCTGCTTGCAAGAAACACCGGTGTGAAGACCC
TTATCGTCGCTGTCAACAAGATGGACGACCCTACCGTTGAGTGGAGCAAG
GCTCGTTTCGACGAGTGTACCGTCAAGGTGGGCAAGTACTTGGAGAACCT
CGGTTACAAGAAGAGCGATCTCTTCTTCATGCCCATCTCTGCCCAGAGGA
CCACGGGTATCAAGGACCGCGTCCCCACGGACCTTGCTCCCTGGTATGGC
GGTCCCTCCCTTTTGGAGTTCCTGTCGGAGATGAAGGTGCCCGAGCGTAA
GATCAACGCACCTTTCATGATGCCCATCAGTGCCAAGTACCGTGACATGG
GTACCATGGTCGAGGGTCGCATTGAGTCTGGTGTGCTTAAGAAGAACGGC
AGCTGCATCATGATGCCCAACCGCACCAAGGTCGAAATTGCCGCTCTCTA
TGGTGAGACTGAAGACGAAATCCCCACCGCTACCTGCGGTGACCAGGTCC
GTCTTCGTCTCCGTGGTGTGGAAGAAGAAGATATCTTGCCCGGATTCGTG
CTCTGCTCCCCCAAGCGTCTGGTGAACTGTGTCAAGACTTTCGAGGCCAA
GATCAGGATTCTTGACCTGAAGAGCATTCTCACGGCTGGTTACAACTGCG
TGATGCACGTGCACTCTGCTGTCGAAGAAGTTACTGTTGCAGCACTTCTG
CACAAGTGCGAGCCCGGCACTGGACGTCGGAGCAAGCGCCCCCCTCCTTT
CGCTAGCAAGGGTCAGACCATCATCGCTCGTCTCGAGGTGACGAGCACTG
CTGGTGCCGTTTGTGTCGAGCGCTTTGAGGACTACAACCAGATGGGTCGG
TTTACTCTGCGTGATCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0003747translation release factor activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
GO:0000288nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SUP35CBS51388_006869Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006869-T1CBS51388_006869-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006869-T1.cdsCBS51388_006869-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006869-T1.exon2CBS51388_006869-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_006869-T1.exon1CBS51388_006869-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteBUSCO:EOG09261PUF
DBxrefInterPro:IPR009001
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR004160
DBxrefInterPro:IPR004161
DBxrefInterPro:IPR000795
DBxrefInterPro:IPR003285
DBxrefPFAM:PF03143
DBxrefPFAM:PF03144
DBxrefPFAM:PF00009
Producttranslation termination factor GTPase eRF3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An11supercontigAn11:1117604..1119844 -
Powered by Drupal