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Sequences
The following sequences are available for this feature:
mRNA from alignment at An11:1200376..1200896- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006897-T1 ID=CBS51388_006897-T1|Name=CBS51388_006897-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=521bp|location=Sequence derived from alignment at An11:1200376..1200896- (Aspergillus niger CBS 513.88)
ATGAAGCTCGTCCGGTAAGCCAACCGCTGCAGATCGCGCCTGGTGCAGCT
GTGCCCGCGAAGATTGCACAGCGACTAATTCCTATCTGCACAGGTTTCTG
ATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAATGGTGAGTT
TCCTATCCCTTTATTTCTTCCAGCGCCTGAAGCTCCATCCATCTCAACAT
CAAATCTAACCACAAATAGGCACCATCCTCCACGGCACCATCACCTCCGT
CTCCCCCCAGATGAACACCTCCCTCCGCACGGTCAAAATGACCCCCAAAG
GCCGCGACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATT
CGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGA
CGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAG
GCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGT
GGCCGTGGTCGTGGATTCTAA back to topCoding sequence (CDS) from alignment at An11:1200376..1200896- >CBS51388_006897-T1 ID=CBS51388_006897-T1|Name=CBS51388_006897-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1098bp|location=Sequence derived from alignment at An11:1200376..1200896- (Aspergillus niger CBS 513.88)
GCACCATCCTCCACGGCACCATCACCTCCGTCTCCCCCCAGATGAACACC
TCCCTCCGCACGGTCAAAATGACCCCCAAAGGCCGCGACCCCATCTCCCT
CGACACCATCAACATCCGTGGCTCCACGATTCGCTACTACATCCTGCCCG
ATAGTCTGCCCCTCGATACGCTGCTGATCGACGACACGCCCAAGCCGAAG
AACAAGGCGCGCAAGGAAGCGGACCGCGGAGGCCGTGGTGGTCGTGGTGG
TCCTCGTGGTAGAGGGCGCGGTCGTGGCCGTGGCCGTGGTCGTGGATTCT
AAGTTTCTGATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAA
TGATGAAGCTCGTCCGGCACCATCCTCCACGGCACCATCACCTCCGTCTC
CCCCCAGATGAACACCTCCCTCCGCACGGTCAAAATGACCCCCAAAGGCC
GCGACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATTCGC
TACTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGACGA
CACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAGGCC
GTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGTGGC
CGTGGTCGTGGATTCTAAGTTTCTGATGAAGTGCGCCAACGAGACGGTGA
CGATTGAGCTGAAGAATGATGAAGCTCGTCCGGCACCATCCTCCACGGCA
CCATCACCTCCGTCTCCCCCCAGATGAACACCTCCCTCCGCACGGTCAAA
ATGACCCCCAAAGGCCGCGACCCCATCTCCCTCGACACCATCAACATCCG
TGGCTCCACGATTCGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATA
CGCTGCTGATCGACGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAA
GCGGACCGCGGAGGCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCG
CGGTCGTGGCCGTGGCCGTGGTCGTGGATTCTAAGTTTCTGATGAAGTGC
GCCAACGAGACGGTGACGATTGAGCTGAAGAATGATGAAGCTCGTCCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000387 | spliceosomal snRNP assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265FL1 |
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034102 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | mRNA splicing protein smd1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An11 | supercontig | An11:1200376..1200896 - |
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