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CBS51388_007247-T1, CBS51388_007247-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_007247-T1
Unique NameCBS51388_007247-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An11:2262477..2263623-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_007247-T1 ID=CBS51388_007247-T1|Name=CBS51388_007247-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1147bp|location=Sequence derived from alignment at An11:2262477..2263623- (Aspergillus niger CBS 513.88)
ATGCCTCGCGGACCGTGAGTAACACGCCCAATGTTGTTCTTACTGCATGC
AGCGAGATTACCGGTGGAATTGCGTTTTCACAGGTCTATCTTCGCTACGG
CAGGAGAATTGAAGATTTTGAGGAGCTGAAAACTAACCACCATGCTCGTA
CAGTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCCTGG
ACAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCACAAG
CTCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGGTACGAGCC
ATCCAGCGATTACGAAGGAACCGAAAGAGAGGATCGGAATAGGAGGACTG
ACAGGTTTATAGTCTCAAGTACGCCCTTAACGGCCGTGAGACCAAGGCGA
TCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGCACCGACCCT
ACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAAGACCGGCGA
GAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCGTCCACCGTA
TCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAGCGTGTTCAG
CTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGAGAACGTG
AGTGCATACTCTCTACAAGTTCCGCGTCATTCAGTCGTTGGACCAAGCTT
TGGTTGATCGGCGGAGGACGACAGAACTAGAATCGCAGTTCTTTGCTGGA
ACACAGTAAGGAGCCGCAACTTCAGAACAAAGTGTGCTAACAAGGGCTTT
TTTATAGCATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTG
AAGATCGACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACAC
TGGTGTTGTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTG
TCGTTACCCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATC
AAGGACGCTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGT
CATCGGTCAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCA
AGCTCTCCATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAG
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Coding sequence (CDS) from alignment at An11:2262477..2263623-

>CBS51388_007247-T1 ID=CBS51388_007247-T1|Name=CBS51388_007247-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3108bp|location=Sequence derived from alignment at An11:2262477..2263623- (Aspergillus niger CBS 513.88)
CATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTGAAGATCG
ACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACACTGGTGTT
GTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTGTCGTTAC
CCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATCAAGGACG
CTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGTCATCGGT
CAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCAAGCTCTC
CATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAGTCTCAAGTAC
GCCCTTAACGGCCGTGAGACCAAGGCGATCATGATGCAGCGTCTGATCAA
GGTCGACGGCAAGGTCCGCACCGACCCTACCTACCCCGCTGGTTTCATGG
ACGTCATCGGCATCGAGAAGACCGGCGAGAACTTCCGTCTCATCTACGAC
ACCAAGGGTCGCTTCACCGTCCACCGTATCCAGGCTGAGGAGGCCGAGTA
CAAGCTCTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCAT
TCTTGGTTACGCACGATGCGAGAACTAAGAAGCACCAGAAGCGCCTTAGC
GCGCCTTCTCACTGGCTCCTGGACAAGATGTCCGGAACCTACGCCCCCAA
GGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTGCCCCTGATCGTCT
TCATCCGCAACCGATGCCTCGCGGACCCATCCGTTACCCCGACCCCGCCA
TCAAGGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGATCGCC
GACTTCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTGGTCG
TAACATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGATGGTG
GTTTCAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGCCACC
CGTGAGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCTCCCT
GCCCAAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGACCGCC
GCCGTGCCCTCCAGTAGTCTCAAGTACGCCCTTAACGGCCGTGAGACCAA
GGCGATCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGCACCG
ACCCTACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAAGACC
GGCGAGAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCGTCCA
CCGTATCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAGCGTG
TTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGCGAGA
ACTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCCTGGA
CAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCACAAGC
TCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGATGCCTCGCG
GACCCATCCGTTACCCCGACCCCGCCATCAAGGTCAACGACACCGTGAAG
ATCGACATTGCCACTGGCAAGATCGCCGACTTCGTCAAGTTCGACACTGG
TGTTGTCGCCATGGCCACCGGTGGTCGTAACATGGGTCGTGTCGGTGTCG
TTACCCACCGTGAGCGCCACGATGGTGGTTTCAACATCGTCCACATCAAG
GACGCTATTGACAACACCTTCGCCACCCGTGAGTCCAACGTCTTCGTCAT
CGGTCAGGACAAGCCCTGGATCTCCCTGCCCAAGGGCAAGGGTGTCAAGC
TCTCCATCGCTGAGGAGCGTGACCGCCGCCGTGCCCTCCAGTAGTCTCAA
GTACGCCCTTAACGGCCGTGAGACCAAGGCGATCATGATGCAGCGTCTGA
TCAAGGTCGACGGCAAGGTCCGCACCGACCCTACCTACCCCGCTGGTTTC
ATGGACGTCATCGGCATCGAGAAGACCGGCGAGAACTTCCGTCTCATCTA
CGACACCAAGGGTCGCTTCACCGTCCACCGTATCCAGGCTGAGGAGGCCG
AGTACAAGCTCTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATC
CCATTCTTGGTTACGCACGATGCGAGAACTAAGAAGCACCAGAAGCGCCT
TAGCGCGCCTTCTCACTGGCTCCTGGACAAGATGTCCGGAACCTACGCCC
CCAAGGCCTCCCCCGGTCCTCACAAGCTCCGGGACTGCCTGCCCCTGATC
GTCTTCATCCGCAACCGATGCCTCGCGGACCCATCCGTTACCCCGACCCC
GCCATCAAGGTCAACGACACCGTGAAGATCGACATTGCCACTGGCAAGAT
CGCCGACTTCGTCAAGTTCGACACTGGTGTTGTCGCCATGGCCACCGGTG
GTCGTAACATGGGTCGTGTCGGTGTCGTTACCCACCGTGAGCGCCACGAT
GGTGGTTTCAACATCGTCCACATCAAGGACGCTATTGACAACACCTTCGC
CACCCGTGAGTCCAACGTCTTCGTCATCGGTCAGGACAAGCCCTGGATCT
CCCTGCCCAAGGGCAAGGGTGTCAAGCTCTCCATCGCTGAGGAGCGTGAC
CGCCGCCGTGCCCTCCAGTAGTCTCAAGTACGCCCTTAACGGCCGTGAGA
CCAAGGCGATCATGATGCAGCGTCTGATCAAGGTCGACGGCAAGGTCCGC
ACCGACCCTACCTACCCCGCTGGTTTCATGGACGTCATCGGCATCGAGAA
GACCGGCGAGAACTTCCGTCTCATCTACGACACCAAGGGTCGCTTCACCG
TCCACCGTATCCAGGCTGAGGAGGCCGAGTACAAGCTCTGCAAGGTCAAG
CGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTACGCACGATGC
GAGAACTAAGAAGCACCAGAAGCGCCTTAGCGCGCCTTCTCACTGGCTCC
TGGACAAGATGTCCGGAACCTACGCCCCCAAGGCCTCCCCCGGTCCTCAC
AAGCTCCGGGACTGCCTGCCCCTGATCGTCTTCATCCGCAACCGATGCCT
CGCGGACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_007247CBS51388_007247Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007247-T1CBS51388_007247-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007247-T1.cdsCBS51388_007247-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007247-T1.exon4CBS51388_007247-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_007247-T1.exon3CBS51388_007247-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_007247-T1.exon2CBS51388_007247-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_007247-T1.exon1CBS51388_007247-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR041982
DBxrefInterPro:IPR018199
DBxrefInterPro:IPR013843
DBxrefInterPro:IPR032277
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR038237
DBxrefInterPro:IPR000876
DBxrefInterPro:IPR013845
DBxrefInterPro:IPR002942
DBxrefPFAM:PF01479
DBxrefPFAM:PF08071
DBxrefPFAM:PF00900
DBxrefPFAM:PF16121
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An11supercontigAn11:2262477..2263623 -
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