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CBS51388_007353-T1, CBS51388_007353-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_007353-T1
Unique NameCBS51388_007353-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An11:2564316..2566306+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_007353-T1 ID=CBS51388_007353-T1|Name=CBS51388_007353-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1991bp|location=Sequence derived from alignment at An11:2564316..2566306+ (Aspergillus niger CBS 513.88)
ATGTCTCCGGAGACCCGTCGCCTGTATAAGCTGCTGACCGAGGTCGTGGA
GCGGCAAGACCTCCGCGGCGCTCTTTACACCGATGACCGCGATGACGAGG
TCAGCGACCGTTTGGAGGTGGTGATTGTCAACGACGAGGTTGCCCGACTC
TACCAGCACAGCGAGCGTGCGAAGAAGGACCACCCTAGCTTCGCCCCCTT
GACGCATTACTGTGTGGCCTTGGCCAAGTACCTGCAGAGTCCGCTGAAGG
AATACGCGTCCCTGGGCCGGGACATCGTGTCCATCCAATTCAAGCCGGGC
CAGCAGCTTGTCTCTCAGGATCTGTTGCTGAAGCAGCTGGAGACCGCGTT
GGTGGACATGGTGAACCTGGTGGGTGTGGACATTAATGAAGCCGTCACGG
ATTCGGCGACAGCCAATCTCCTGCCTTACGTCTGTGGTCTGGGACCCCGA
AAGGCGGCACACCTGCTCAAGATTGTGAACATGAACGGCGGCGTGGTCAA
CAACCGGGCGGAGCTGCTGGGTGTGAACGCCCAGTATCCGGCCATGGGTG
TGAAGGTGTGGAACAACTGCGCCAGCTTCTTGTACATCGACTTTGAGAAC
GCCGATCCGGACGCAGACCCGCTGGACAACACGCGTGTGCACCCCGAAGA
CTACGATATTGCGCGCAAGATGGCGGCCGATGCGCTGGAACTCGACGAAG
AGGATATCAAGGCGGAGACGGACGAGAATGGACCGGGGGCAATTGTGCGC
AAATTGTTCCGCGAGGAGGCACAAGATCGGGTGAACGACTTGATTCTGGA
GGAGTACGCCGAGCAACTGGAGAAGAACCTGAACCAGCGCAAGCGAGCGA
CATTGGAGACGATCCGGGCGGAGCTGCAACAGCCGTACGAGGAACTACGG
AAGCAATTCGTCTTCCTCAGCACGGATGACATTTTCACCATGCTCACTGG
TGAGACGGCAGAGACGTTGTCGGAGGGCATGGTGGTGCCCATCTCCATCA
AGCGGATCACGGACGATCACATTGACGGCAAGCTGGACTGTGGAATCGAC
GCCCTGGTGCCCGAGTCGGAGCTGACCGACCGGTATGATATCCCCGTGCG
GGCGCTGTATCAAATCCACCAGACGCTGCCGGCCAAGGTGCTCTTCCTGA
ACCGCAAGAACTTCCTGTGCAATGTCTCGCTGCGGGAGGAGCAGGTCAGC
CGGCCGGTTCTACGGACGCCGGACCGACTGCAAGGGGAGTGGGACGACCG
GCAGGAGGCGCAGGACCGGGAAGCGCAGCAGGAGAAGACCCAGAGCGGCG
GACGGACGATGCGGGTGATCAAGCACCCGCTGTTCCGGCCGTTCAACTCG
ACGCAGGCAGAGGAATTCTTGGGGTCGCAGAGCCGGGGAGATGTGGTGAT
TCGCCCGTCGTCCAAGGGACCGGACCATCTGGCGGTAACGTGGAAGGTGT
CCGACGGCATCTTCCAGCATATCGATGTGCTGGAGCTGGACAAGGAGAAC
GAATTCTCCGTGGGACGGACACTGAAGGTGGGCGGACGCTACACGTACAG
TGATTTGGACGATTTGATCTTCAACCACGTCAAGGCGATGACCAAGAAGG
TGGATGAGATGATGTTGCATGAGAAGTACCAGGACGGCAACAAGGACGCC
ACCTGTAAGTCCATCTTTCCTTCGTCTTCTTCTTTGTTCTTTGCGACTGG
TCATATTGTAAATGATCACTAACCTTTTCTCTTTTGCTAGACTCCTGGTT
GGAAACATACACCAAGGCCAACCCCCGGCGGTCGGCCTACGCCTTCTGCA
TCGATCCCAAACATGCGGGCTACTTCTTCCTGTGCTTCAAGGCAGGTGAG
AAGGCGCCGCTGCACAGCTGGCCGGTGAAGGTGATCCCTCAAGGATATGA
GCTGCAGCGCAACCCATATCCGGACATGCGGGCCCTGTGCAATGGCTTCA
AGCTGTTGTTCACCAACATGCAGGCCGGCAAGAGGCGGTGA
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Coding sequence (CDS) from alignment at An11:2564316..2566306+

>CBS51388_007353-T1 ID=CBS51388_007353-T1|Name=CBS51388_007353-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3810bp|location=Sequence derived from alignment at An11:2564316..2566306+ (Aspergillus niger CBS 513.88)
ATGTCTCCGGAGACCCGTCGCCTGTATAAGCTGCTGACCGAGGTCGTGGA
GCGGCAAGACCTCCGCGGCGCTCTTTACACCGATGACCGCGATGACGAGG
TCAGCGACCGTTTGGAGGTGGTGATTGTCAACGACGAGGTTGCCCGACTC
TACCAGCACAGCGAGCGTGCGAAGAAGGACCACCCTAGCTTCGCCCCCTT
GACGCATTACTGTGTGGCCTTGGCCAAGTACCTGCAGAGTCCGCTGAAGG
AATACGCGTCCCTGGGCCGGGACATCGTGTCCATCCAATTCAAGCCGGGC
CAGCAGCTTGTCTCTCAGGATCTGTTGCTGAAGCAGCTGGAGACCGCGTT
GGTGGACATGGTGAACCTGGTGGGTGTGGACATTAATGAAGCCGTCACGG
ATTCGGCGACAGCCAATCTCCTGCCTTACGTCTGTGGTCTGGGACCCCGA
AAGGCGGCACACCTGCTCAAGATTGTGAACATGAACGGCGGCGTGGTCAA
CAACCGGGCGGAGCTGCTGGGTGTGAACGCCCAGTATCCGGCCATGGGTG
TGAAGGTGTGGAACAACTGCGCCAGCTTCTTGTACATCGACTTTGAGAAC
GCCGATCCGGACGCAGACCCGCTGGACAACACGCGTGTGCACCCCGAAGA
CTACGATATTGCGCGCAAGATGGCGGCCGATGCGCTGGAACTCGACGAAG
AGGATATCAAGGCGGAGACGGACGAGAATGGACCGGGGGCAATTGTGCGC
AAATTGTTCCGCGAGGAGGCACAAGATCGGGTGAACGACTTGATTCTGGA
GGAGTACGCCGAGCAACTGGAGAAGAACCTGAACCAGCGCAAGCGAGCGA
CATTGGAGACGATCCGGGCGGAGCTGCAACAGCCGTACGAGGAACTACGG
AAGCAATTCGTCTTCCTCAGCACGGATGACATTTTCACCATGCTCACTGG
TGAGACGGCAGAGACGTTGTCGGAGGGCATGGTGGTGCCCATCTCCATCA
AGCGGATCACGGACGATCACATTGACGGCAAGCTGGACTGTGGAATCGAC
GCCCTGGTGCCCGAGTCGGAGCTGACCGACCGGTATGATATCCCCGTGCG
GGCGCTGTATCAAATCCACCAGACGCTGCCGGCCAAGGTGCTCTTCCTGA
ACCGCAAGAACTTCCTGTGCAATGTCTCGCTGCGGGAGGAGCAGGTCAGC
CGGCCGGTTCTACGGACGCCGGACCGACTGCAAGGGGAGTGGGACGACCG
GCAGGAGGCGCAGGACCGGGAAGCGCAGCAGGAGAAGACCCAGAGCGGCG
GACGGACGATGCGGGTGATCAAGCACCCGCTGTTCCGGCCGTTCAACTCG
ACGCAGGCAGAGGAATTCTTGGGGTCGCAGAGCCGGGGAGATGTGGTGAT
TCGCCCGTCGTCCAAGGGACCGGACCATCTGGCGGTAACGTGGAAGGTGT
CCGACGGCATCTTCCAGCATATCGATGTGCTGGAGCTGGACAAGGAGAAC
GAATTCTCCGTGGGACGGACACTGAAGGTGGGCGGACGCTACACGTACAG
TGATTTGGACGATTTGATCTTCAACCACGTCAAGGCGATGACCAAGAAGG
TGGATGAGATGATGTTGCATGAGAAGTACCAGGACGGCAACAAGGACGCC
ACCTACTCCTGGTTGGAAACATACACCAAGGCCAACCCCCGGCGGTCGGC
CTACGCCTTCTGCATCGATCCCAAACATGCGGGCTACTTCTTCCTGTGCT
TCAAGGCAGGTGAGAAGGCGCCGCTGCACAGCTGGCCGGTGAAGGTGATC
CCTCAAGGATATGAGCTGCAGCGCAACCCATATCCGGACATGCGGGCCCT
GTGCAATGGCTTCAAGCTGTTGTTCACCAACATGCAGGCCGGCAAGAGGC
GGTGAATGTCTCCGGAGACCCGTCGCCTGTATAAGCTGCTGACCGAGGTC
GTGGAGCGGCAAGACCTCCGCGGCGCTCTTTACACCGATGACCGCGATGA
CGAGGTCAGCGACCGTTTGGAGGTGGTGATTGTCAACGACGAGGTTGCCC
GACTCTACCAGCACAGCGAGCGTGCGAAGAAGGACCACCCTAGCTTCGCC
CCCTTGACGCATTACTGTGTGGCCTTGGCCAAGTACCTGCAGAGTCCGCT
GAAGGAATACGCGTCCCTGGGCCGGGACATCGTGTCCATCCAATTCAAGC
CGGGCCAGCAGCTTGTCTCTCAGGATCTGTTGCTGAAGCAGCTGGAGACC
GCGTTGGTGGACATGGTGAACCTGGTGGGTGTGGACATTAATGAAGCCGT
CACGGATTCGGCGACAGCCAATCTCCTGCCTTACGTCTGTGGTCTGGGAC
CCCGAAAGGCGGCACACCTGCTCAAGATTGTGAACATGAACGGCGGCGTG
GTCAACAACCGGGCGGAGCTGCTGGGTGTGAACGCCCAGTATCCGGCCAT
GGGTGTGAAGGTGTGGAACAACTGCGCCAGCTTCTTGTACATCGACTTTG
AGAACGCCGATCCGGACGCAGACCCGCTGGACAACACGCGTGTGCACCCC
GAAGACTACGATATTGCGCGCAAGATGGCGGCCGATGCGCTGGAACTCGA
CGAAGAGGATATCAAGGCGGAGACGGACGAGAATGGACCGGGGGCAATTG
TGCGCAAATTGTTCCGCGAGGAGGCACAAGATCGGGTGAACGACTTGATT
CTGGAGGAGTACGCCGAGCAACTGGAGAAGAACCTGAACCAGCGCAAGCG
AGCGACATTGGAGACGATCCGGGCGGAGCTGCAACAGCCGTACGAGGAAC
TACGGAAGCAATTCGTCTTCCTCAGCACGGATGACATTTTCACCATGCTC
ACTGGTGAGACGGCAGAGACGTTGTCGGAGGGCATGGTGGTGCCCATCTC
CATCAAGCGGATCACGGACGATCACATTGACGGCAAGCTGGACTGTGGAA
TCGACGCCCTGGTGCCCGAGTCGGAGCTGACCGACCGGTATGATATCCCC
GTGCGGGCGCTGTATCAAATCCACCAGACGCTGCCGGCCAAGGTGCTCTT
CCTGAACCGCAAGAACTTCCTGTGCAATGTCTCGCTGCGGGAGGAGCAGG
TCAGCCGGCCGGTTCTACGGACGCCGGACCGACTGCAAGGGGAGTGGGAC
GACCGGCAGGAGGCGCAGGACCGGGAAGCGCAGCAGGAGAAGACCCAGAG
CGGCGGACGGACGATGCGGGTGATCAAGCACCCGCTGTTCCGGCCGTTCA
ACTCGACGCAGGCAGAGGAATTCTTGGGGTCGCAGAGCCGGGGAGATGTG
GTGATTCGCCCGTCGTCCAAGGGACCGGACCATCTGGCGGTAACGTGGAA
GGTGTCCGACGGCATCTTCCAGCATATCGATGTGCTGGAGCTGGACAAGG
AGAACGAATTCTCCGTGGGACGGACACTGAAGGTGGGCGGACGCTACACG
TACAGTGATTTGGACGATTTGATCTTCAACCACGTCAAGGCGATGACCAA
GAAGGTGGATGAGATGATGTTGCATGAGAAGTACCAGGACGGCAACAAGG
ACGCCACCTACTCCTGGTTGGAAACATACACCAAGGCCAACCCCCGGCGG
TCGGCCTACGCCTTCTGCATCGATCCCAAACATGCGGGCTACTTCTTCCT
GTGCTTCAAGGCAGGTGAGAAGGCGCCGCTGCACAGCTGGCCGGTGAAGG
TGATCCCTCAAGGATATGAGCTGCAGCGCAACCCATATCCGGACATGCGG
GCCCTGTGCAATGGCTTCAAGCTGTTGTTCACCAACATGCAGGCCGGCAA
GAGGCGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPT6CBS51388_007353Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007353-T1.exon1CBS51388_007353-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_007353-T1.exon2CBS51388_007353-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007353-T1.cdsCBS51388_007353-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007353-T1CBS51388_007353-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR012337
DBxrefInterPro:IPR010994
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR035019
DBxrefInterPro:IPR035018
DBxrefInterPro:IPR000980
DBxrefInterPro:IPR003029
DBxrefInterPro:IPR028231
DBxrefInterPro:IPR035420
DBxrefInterPro:IPR042066
DBxrefInterPro:IPR041692
DBxrefInterPro:IPR037027
DBxrefInterPro:IPR036860
DBxrefInterPro:IPR032706
DBxrefPFAM:PF14633
DBxrefPFAM:PF00017
DBxrefPFAM:PF17674
DBxrefPFAM:PF14635
ProductTranscription elongation factor spt6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An11supercontigAn11:2564316..2566306 +
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