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Sequences
The following sequences are available for this feature:
mRNA from alignment at An12:259520..261024- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_007478-T1 ID=CBS51388_007478-T1|Name=CBS51388_007478-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1505bp|location=Sequence derived from alignment at An12:259520..261024- (Aspergillus niger CBS 513.88)
ATGCCTGCTCTTCCCATCCTCGCCCTTGCCCTCGCCCCGTTGCTGGTCAA
CGGCCAGCTCTCCGGTAGCGTCGGTCCGCTCACTTCGGCACACTCCAAGG
CTGCGACCAAGACGTGTAACGTGCTGGACTATGGTGCTGTGGCGGACAAC
TCCACCGACATTGGGTCCGCCCTCTCAGAAGCCTGGGATGCGTGCTCGGA
TGGAGGTCTGATCTATATTCCTCCTGGTGATTATGCGATGGATACCTGGG
TGTCTCTGTCGGGAGGCAAGGCGACCGCCATCATATTAGACGGCACTATC
TACCGCACTGGCACCGACGGAGGTAATATGATTCTAGTGGAGAATTCTTC
CGACTTTGAGTTGTACAGCAACTCGTCCTCTGGTGCCGTCCAGGGATTTG
GATATGTGTACCACCGGGAGGGTGATCTTGATGGGCCACGGATTTTGCGA
CTCCAGGACGTGAGCAATTTCGCGGTTCATGATATTATCCTGGTGGACGC
GCCGGCTTTCCACTTCGTCATGGACGACTGCTCCGATGGGGAGGTGTACA
ACATGGCCATTCGCGGTGGTAACTCCGGCGGCTTGGATGGGATTGATGTG
TGGGGTAGCAACATCTGGGTCCACGATGTATGTCCCACGTTATGTCACAA
TAAAAAGCGCTCGGTGCTGACCCATGTATCCAGGTCGAGGTGACCAACAA
GGATGAATGTGTCACGGTCAAGGTAAGGGCCATCTGGTATGATCACCCCT
AGCTCGTGTACTGACAATCCGCAGAGCCCTGCCAACAACATCCTTGTGGA
AAGTATCTACTGCAACTGGAGTGGAGGTTGTGCGATGGGATCTCTCGGCG
CGGACACCGATATCACTGATATTCTGTACCGCAACGTTTACACCTGGAGT
TCCAACCAGATGTACATGATCAAGAGCAACGGCGGCAGTGGGACAGTCAA
TAACACCGTTCTGGAGAACTTCATTGGTATGTTTGACCCACTCGAACGAG
GTATATACAGCCTCTGACTAATGTGGTTGCAGGACACGGCAACGCTTATT
CTCTGGACGTTGACAGCTACTGGAGCAGCATGACAGCCGTGGATGGCGAC
GGTGTGCAACTGAGCAACATCACGTTCAAGAACTGGAAGGGAACGGAGGC
GGATGGCGCCGAACGCGGGCCCATCAAGGTGGTATGCTCAGACACGGCCC
CTTGCACCGACATCACCATCGAGGATTTTGCCATGTGGACCGAAAGCGGC
GATGAGCAGACCTACACCTGCGAGTCGGCGTATGGCGATGGATTCTGCCT
CGAAGACAGCGATTCCACCACCTCGTACACGACCACCCAGACTGTCACCA
CGGCGCCCTCGGGATATTCGGCAACCACGATGGCAGCGGATCTCACCACG
GACTTTGGCACGACCGCGTCCATCCCCATCCCTACCATCCCGACTTCCTT
CTATCCCGGCTTGACGGCGATCAGTCCGTTGGCATCGGCTGCCACCACGG
CATGA back to topCoding sequence (CDS) from alignment at An12:259520..261024- >CBS51388_007478-T1 ID=CBS51388_007478-T1|Name=CBS51388_007478-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5364bp|location=Sequence derived from alignment at An12:259520..261024- (Aspergillus niger CBS 513.88)
GACACGGCAACGCTTATTCTCTGGACGTTGACAGCTACTGGAGCAGCATG
ACAGCCGTGGATGGCGACGGTGTGCAACTGAGCAACATCACGTTCAAGAA
CTGGAAGGGAACGGAGGCGGATGGCGCCGAACGCGGGCCCATCAAGGTGG
TATGCTCAGACACGGCCCCTTGCACCGACATCACCATCGAGGATTTTGCC
ATGTGGACCGAAAGCGGCGATGAGCAGACCTACACCTGCGAGTCGGCGTA
TGGCGATGGATTCTGCCTCGAAGACAGCGATTCCACCACCTCGTACACGA
CCACCCAGACTGTCACCACGGCGCCCTCGGGATATTCGGCAACCACGATG
GCAGCGGATCTCACCACGGACTTTGGCACGACCGCGTCCATCCCCATCCC
TACCATCCCGACTTCCTTCTATCCCGGCTTGACGGCGATCAGTCCGTTGG
CATCGGCTGCCACCACGGCATGAAGCCCTGCCAACAACATCCTTGTGGAA
AGTATCTACTGCAACTGGAGTGGAGGTTGTGCGATGGGATCTCTCGGCGC
GGACACCGATATCACTGATATTCTGTACCGCAACGTTTACACCTGGAGTT
CCAACCAGATGTACATGATCAAGAGCAACGGCGGCAGTGGGACAGTCAAT
AACACCGTTCTGGAGAACTTCATTGGTCGAGGTGACCAACAAGGATGAAT
GTGTCACGGTCAAGATGCCTGCTCTTCCCATCCTCGCCCTTGCCCTCGCC
CCGTTGCTGGTCAACGGCCAGCTCTCCGGTAGCGTCGGTCCGCTCACTTC
GGCACACTCCAAGGCTGCGACCAAGACGTGTAACGTGCTGGACTATGGTG
CTGTGGCGGACAACTCCACCGACATTGGGTCCGCCCTCTCAGAAGCCTGG
GATGCGTGCTCGGATGGAGGTCTGATCTATATTCCTCCTGGTGATTATGC
GATGGATACCTGGGTGTCTCTGTCGGGAGGCAAGGCGACCGCCATCATAT
TAGACGGCACTATCTACCGCACTGGCACCGACGGAGGTAATATGATTCTA
GTGGAGAATTCTTCCGACTTTGAGTTGTACAGCAACTCGTCCTCTGGTGC
CGTCCAGGGATTTGGATATGTGTACCACCGGGAGGGTGATCTTGATGGGC
CACGGATTTTGCGACTCCAGGACGTGAGCAATTTCGCGGTTCATGATATT
ATCCTGGTGGACGCGCCGGCTTTCCACTTCGTCATGGACGACTGCTCCGA
TGGGGAGGTGTACAACATGGCCATTCGCGGTGGTAACTCCGGCGGCTTGG
ATGGGATTGATGTGTGGGGTAGCAACATCTGGGTCCACGATGACACGGCA
ACGCTTATTCTCTGGACGTTGACAGCTACTGGAGCAGCATGACAGCCGTG
GATGGCGACGGTGTGCAACTGAGCAACATCACGTTCAAGAACTGGAAGGG
AACGGAGGCGGATGGCGCCGAACGCGGGCCCATCAAGGTGGTATGCTCAG
ACACGGCCCCTTGCACCGACATCACCATCGAGGATTTTGCCATGTGGACC
GAAAGCGGCGATGAGCAGACCTACACCTGCGAGTCGGCGTATGGCGATGG
ATTCTGCCTCGAAGACAGCGATTCCACCACCTCGTACACGACCACCCAGA
CTGTCACCACGGCGCCCTCGGGATATTCGGCAACCACGATGGCAGCGGAT
CTCACCACGGACTTTGGCACGACCGCGTCCATCCCCATCCCTACCATCCC
GACTTCCTTCTATCCCGGCTTGACGGCGATCAGTCCGTTGGCATCGGCTG
CCACCACGGCATGAAGCCCTGCCAACAACATCCTTGTGGAAAGTATCTAC
TGCAACTGGAGTGGAGGTTGTGCGATGGGATCTCTCGGCGCGGACACCGA
TATCACTGATATTCTGTACCGCAACGTTTACACCTGGAGTTCCAACCAGA
TGTACATGATCAAGAGCAACGGCGGCAGTGGGACAGTCAATAACACCGTT
CTGGAGAACTTCATTGGTCGAGGTGACCAACAAGGATGAATGTGTCACGG
TCAAGATGCCTGCTCTTCCCATCCTCGCCCTTGCCCTCGCCCCGTTGCTG
GTCAACGGCCAGCTCTCCGGTAGCGTCGGTCCGCTCACTTCGGCACACTC
CAAGGCTGCGACCAAGACGTGTAACGTGCTGGACTATGGTGCTGTGGCGG
ACAACTCCACCGACATTGGGTCCGCCCTCTCAGAAGCCTGGGATGCGTGC
TCGGATGGAGGTCTGATCTATATTCCTCCTGGTGATTATGCGATGGATAC
CTGGGTGTCTCTGTCGGGAGGCAAGGCGACCGCCATCATATTAGACGGCA
CTATCTACCGCACTGGCACCGACGGAGGTAATATGATTCTAGTGGAGAAT
TCTTCCGACTTTGAGTTGTACAGCAACTCGTCCTCTGGTGCCGTCCAGGG
ATTTGGATATGTGTACCACCGGGAGGGTGATCTTGATGGGCCACGGATTT
TGCGACTCCAGGACGTGAGCAATTTCGCGGTTCATGATATTATCCTGGTG
GACGCGCCGGCTTTCCACTTCGTCATGGACGACTGCTCCGATGGGGAGGT
GTACAACATGGCCATTCGCGGTGGTAACTCCGGCGGCTTGGATGGGATTG
ATGTGTGGGGTAGCAACATCTGGGTCCACGATGACACGGCAACGCTTATT
CTCTGGACGTTGACAGCTACTGGAGCAGCATGACAGCCGTGGATGGCGAC
GGTGTGCAACTGAGCAACATCACGTTCAAGAACTGGAAGGGAACGGAGGC
GGATGGCGCCGAACGCGGGCCCATCAAGGTGGTATGCTCAGACACGGCCC
CTTGCACCGACATCACCATCGAGGATTTTGCCATGTGGACCGAAAGCGGC
GATGAGCAGACCTACACCTGCGAGTCGGCGTATGGCGATGGATTCTGCCT
CGAAGACAGCGATTCCACCACCTCGTACACGACCACCCAGACTGTCACCA
CGGCGCCCTCGGGATATTCGGCAACCACGATGGCAGCGGATCTCACCACG
GACTTTGGCACGACCGCGTCCATCCCCATCCCTACCATCCCGACTTCCTT
CTATCCCGGCTTGACGGCGATCAGTCCGTTGGCATCGGCTGCCACCACGG
CATGAAGCCCTGCCAACAACATCCTTGTGGAAAGTATCTACTGCAACTGG
AGTGGAGGTTGTGCGATGGGATCTCTCGGCGCGGACACCGATATCACTGA
TATTCTGTACCGCAACGTTTACACCTGGAGTTCCAACCAGATGTACATGA
TCAAGAGCAACGGCGGCAGTGGGACAGTCAATAACACCGTTCTGGAGAAC
TTCATTGGTCGAGGTGACCAACAAGGATGAATGTGTCACGGTCAAGATGC
CTGCTCTTCCCATCCTCGCCCTTGCCCTCGCCCCGTTGCTGGTCAACGGC
CAGCTCTCCGGTAGCGTCGGTCCGCTCACTTCGGCACACTCCAAGGCTGC
GACCAAGACGTGTAACGTGCTGGACTATGGTGCTGTGGCGGACAACTCCA
CCGACATTGGGTCCGCCCTCTCAGAAGCCTGGGATGCGTGCTCGGATGGA
GGTCTGATCTATATTCCTCCTGGTGATTATGCGATGGATACCTGGGTGTC
TCTGTCGGGAGGCAAGGCGACCGCCATCATATTAGACGGCACTATCTACC
GCACTGGCACCGACGGAGGTAATATGATTCTAGTGGAGAATTCTTCCGAC
TTTGAGTTGTACAGCAACTCGTCCTCTGGTGCCGTCCAGGGATTTGGATA
TGTGTACCACCGGGAGGGTGATCTTGATGGGCCACGGATTTTGCGACTCC
AGGACGTGAGCAATTTCGCGGTTCATGATATTATCCTGGTGGACGCGCCG
GCTTTCCACTTCGTCATGGACGACTGCTCCGATGGGGAGGTGTACAACAT
GGCCATTCGCGGTGGTAACTCCGGCGGCTTGGATGGGATTGATGTGTGGG
GTAGCAACATCTGGGTCCACGATGACACGGCAACGCTTATTCTCTGGACG
TTGACAGCTACTGGAGCAGCATGACAGCCGTGGATGGCGACGGTGTGCAA
CTGAGCAACATCACGTTCAAGAACTGGAAGGGAACGGAGGCGGATGGCGC
CGAACGCGGGCCCATCAAGGTGGTATGCTCAGACACGGCCCCTTGCACCG
ACATCACCATCGAGGATTTTGCCATGTGGACCGAAAGCGGCGATGAGCAG
ACCTACACCTGCGAGTCGGCGTATGGCGATGGATTCTGCCTCGAAGACAG
CGATTCCACCACCTCGTACACGACCACCCAGACTGTCACCACGGCGCCCT
CGGGATATTCGGCAACCACGATGGCAGCGGATCTCACCACGGACTTTGGC
ACGACCGCGTCCATCCCCATCCCTACCATCCCGACTTCCTTCTATCCCGG
CTTGACGGCGATCAGTCCGTTGGCATCGGCTGCCACCACGGCATGAAGCC
CTGCCAACAACATCCTTGTGGAAAGTATCTACTGCAACTGGAGTGGAGGT
TGTGCGATGGGATCTCTCGGCGCGGACACCGATATCACTGATATTCTGTA
CCGCAACGTTTACACCTGGAGTTCCAACCAGATGTACATGATCAAGAGCA
ACGGCGGCAGTGGGACAGTCAATAACACCGTTCTGGAGAACTTCATTGGT
CGAGGTGACCAACAAGGATGAATGTGTCACGGTCAAGATGCCTGCTCTTC
CCATCCTCGCCCTTGCCCTCGCCCCGTTGCTGGTCAACGGCCAGCTCTCC
GGTAGCGTCGGTCCGCTCACTTCGGCACACTCCAAGGCTGCGACCAAGAC
GTGTAACGTGCTGGACTATGGTGCTGTGGCGGACAACTCCACCGACATTG
GGTCCGCCCTCTCAGAAGCCTGGGATGCGTGCTCGGATGGAGGTCTGATC
TATATTCCTCCTGGTGATTATGCGATGGATACCTGGGTGTCTCTGTCGGG
AGGCAAGGCGACCGCCATCATATTAGACGGCACTATCTACCGCACTGGCA
CCGACGGAGGTAATATGATTCTAGTGGAGAATTCTTCCGACTTTGAGTTG
TACAGCAACTCGTCCTCTGGTGCCGTCCAGGGATTTGGATATGTGTACCA
CCGGGAGGGTGATCTTGATGGGCCACGGATTTTGCGACTCCAGGACGTGA
GCAATTTCGCGGTTCATGATATTATCCTGGTGGACGCGCCGGCTTTCCAC
TTCGTCATGGACGACTGCTCCGATGGGGAGGTGTACAACATGGCCATTCG
CGGTGGTAACTCCGGCGGCTTGGATGGGATTGATGTGTGGGGTAGCAACA
TCTGGGTCCACGAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-18) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR012334 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An12 | supercontig | An12:259520..261024 - |
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