CBS51388_007550-T1, CBS51388_007550-T1 (mRNA) Aspergillus niger CBS 513.88

Overview


Name	CBS51388_007550-T1
Unique Name	CBS51388_007550-T1
Type	mRNA
Organism	Aspergillus niger CBS 513.88

Sequences

The following sequences are available for this feature:

mRNA from alignment at An12:491177..492782-
coding sequence from alignment at An12:491177..492782-

mRNA from alignment at An12:491177..492782-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>CBS51388_007550-T1 ID=CBS51388_007550-T1|Name=CBS51388_007550-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1606bp|location=Sequence derived from alignment at An12:491177..492782- (Aspergillus niger CBS 513.88)
ATGGGTCTCGCATCGAATGCCATCTACTACACCTTTCATCCCTCGGAACT
GAGGTCGATTTTGCAATGGTTGGTTCCGGCCCTTGTCCTCGACCGGCTAT
GATGGGCTTTAGTGTGTTGTGCCAACGCTTACGAAGGCTTTGCCCGTGGT
CATAGGAAGATCTGGCACTCCCCGGTTCATGAGCGCAATGAGAAGAACGA
AACCGAGACTGAGAAGGCCTGCTTCAAATTCCTCGACCTGACCAGTCGGA
GCTTCAGCGCCGTCATCAAGGAGCTCCACCCGGAGCTGTTGATGCCCGTC
TGCGTCTTCTACCTCACACTTCGCGGGCTGGACACCATCGAAGATGACAC
GTCGATTCCTTTGGAAACAAAGGAACCCCTGCTGCGTGGCTTCAAGGACT
TCCTGGAACAGGATGGCTGGACGTTTAATGGCAACCGCCCCGAAGAGAAG
GACCGTGAGCTGCTGGTTCAGTTTCACAATGTCATCACCGAGTTCAAGAA
GATGAAGCCCGCCTACCAGGCCATCATCAAGGACATCACTGACAAGATGG
GCAACGGTATGGCCGATTACTGTCGCAAGGCGGCCTTCGATGACGCCAGC
GTGATCACCGTCGAGGAATACGACCTGTACTGCTACTACGTCGCCGGCTT
GGTTGGTGAAGGACTGACGCGCCTCTTCGTCGAGGCCGAGTTTGGTAACC
CTGCCCTGCTGGAACGCGCGCGTCTGCACAAGTCCATGGGACTCTTCCTC
CAAAAGACAAACATCATCCGAGACATCCGAGAGGACGACGATGATGGACG
TCGCTTCTGGCCCAAAGAGATTTGGTCCAAGCACGTCAAGCAGTTCGATG
ATCTGTTCAAGCCCGAGCACCGCGAAGCTGCACTGAACTGCAGCTCCGAG
ATGGTGTTGAACGCTTTGGAACATGTTGAAGACTGCCTGTTTTACCTGGC
TGGCCTGCGTGAGCAGAGTGTGTTTAACTTCTGCGCGATCCCGCAATCGA
TGGCCATTGCCACGCTGGAGCTCTGCTTCCGCAACCCCGCGATCTTCGAG
CGTAACATCAAGATCACCAAGGGTGAGGCGTGCCAGCTGATGTTCGAGTC
GACGCAGAACCTGCGTATCCTCTGTGCTGCCTTCCGCAAGTACGCGCGCA
AGATTCACAAGAAGAACACACCCAAGGACCCTAACTTCCTCAAGGTCAGC
CTTGTTTGTGGACGGGTATGTTTTTTTATTCCCCTCTGCTCTGGTTGGGC
TGCGCTAATGATTATAGATTGAAAAATGGATCGAGACCATCTTCCCATCT
CAGAATGCCGAGGCCGCCAAGCGTCGTGTCACTGGCGAGCTGACGGAACA
GGAGAAGAAGCAGGCCGAGGAGCACGCCGAGACTCGGAAGGACATGTACT
TTATGATGGGTCTCATGGTGGTGATTGTGTTCATCACCTCGGTCGTTATG
GTATGTGCCTTCACCTGACATCTAATTGAATTTGGCTAACCCGAATAGAT
CTTCACTGCCTGGCTACTGGGTGCGCGATTCGACTTGGCGTGGCAGGAGC
TGCGGTCCGGTAACTTCCGGCCACCAAGAGAAATCCGCCAAAAGCAAGAG
CTGTAA

Coding sequence (CDS) from alignment at An12:491177..492782-

>CBS51388_007550-T1 ID=CBS51388_007550-T1|Name=CBS51388_007550-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=5676bp|location=Sequence derived from alignment at An12:491177..492782- (Aspergillus niger CBS 513.88)
ATCTTCACTGCCTGGCTACTGGGTGCGCGATTCGACTTGGCGTGGCAGGA
GCTGCGGTCCGGTAACTTCCGGCCACCAAGAGAAATCCGCCAAAAGCAAG
AGCTGTAAATTGAAAAATGGATCGAGACCATCTTCCCATCTCAGAATGCC
GAGGCCGCCAAGCGTCGTGTCACTGGCGAGCTGACGGAACAGGAGAAGAA
GCAGGCCGAGGAGCACGCCGAGACTCGGAAGGACATGTACTTTATGATGG
GTCTCATGGTGGTGATTGTGTTCATCACCTCGGTCGTTATGGAAGATCTG
GCACTCCCCGGTTCATGAGCGCAATGAGAAGAACGAAACCGAGACTGAGA
AGGCCTGCTTCAAATTCCTCGACCTGACCAGTCGGAGCTTCAGCGCCGTC
ATCAAGGAGCTCCACCCGGAGCTGTTGATGCCCGTCTGCGTCTTCTACCT
CACACTTCGCGGGCTGGACACCATCGAAGATGACACGTCGATTCCTTTGG
AAACAAAGGAACCCCTGCTGCGTGGCTTCAAGGACTTCCTGGAACAGGAT
GGCTGGACGTTTAATGGCAACCGCCCCGAAGAGAAGGACCGTGAGCTGCT
GGTTCAGTTTCACAATGTCATCACCGAGTTCAAGAAGATGAAGCCCGCCT
ACCAGGCCATCATCAAGGACATCACTGACAAGATGGGCAACGGTATGGCC
GATTACTGTCGCAAGGCGGCCTTCGATGACGCCAGCGTGATCACCGTCGA
GGAATACGACCTGTACTGCTACTACGTCGCCGGCTTGGTTGGTGAAGGAC
TGACGCGCCTCTTCGTCGAGGCCGAGTTTGGTAACCCTGCCCTGCTGGAA
CGCGCGCGTCTGCACAAGTCCATGGGACTCTTCCTCCAAAAGACAAACAT
CATCCGAGACATCCGAGAGGACGACGATGATGGACGTCGCTTCTGGCCCA
AAGAGATTTGGTCCAAGCACGTCAAGCAGTTCGATGATCTGTTCAAGCCC
GAGCACCGCGAAGCTGCACTGAACTGCAGCTCCGAGATGGTGTTGAACGC
TTTGGAACATGTTGAAGACTGCCTGTTTTACCTGGCTGGCCTGCGTGAGC
AGAGTGTGTTTAACTTCTGCGCGATCCCGCAATCGATGGCCATTGCCACG
CTGGAGCTCTGCTTCCGCAACCCCGCGATCTTCGAGCGTAACATCAAGAT
CACCAAGGGTGAGGCGTGCCAGCTGATGTTCGAGTCGACGCAGAACCTGC
GTATCCTCTGTGCTGCCTTCCGCAAGTACGCGCGCAAGATTCACAAGAAG
AACACACCCAAGGACCCTAACTTCCTCAAGGTCAGCCTTGTTTGTGGACG
GATGGGTCTCGCATCGAATGCCATCTACTACACCTTTCATCCCTCGGAAC
TGAGGTCGATTTTGCAATGATCTTCACTGCCTGGCTACTGGGTGCGCGAT
TCGACTTGGCGTGGCAGGAGCTGCGGTCCGGTAACTTCCGGCCACCAAGA
GAAATCCGCCAAAAGCAAGAGCTGTAAATTGAAAAATGGATCGAGACCAT
CTTCCCATCTCAGAATGCCGAGGCCGCCAAGCGTCGTGTCACTGGCGAGC
TGACGGAACAGGAGAAGAAGCAGGCCGAGGAGCACGCCGAGACTCGGAAG
GACATGTACTTTATGATGGGTCTCATGGTGGTGATTGTGTTCATCACCTC
GGTCGTTATGGAAGATCTGGCACTCCCCGGTTCATGAGCGCAATGAGAAG
AACGAAACCGAGACTGAGAAGGCCTGCTTCAAATTCCTCGACCTGACCAG
TCGGAGCTTCAGCGCCGTCATCAAGGAGCTCCACCCGGAGCTGTTGATGC
CCGTCTGCGTCTTCTACCTCACACTTCGCGGGCTGGACACCATCGAAGAT
GACACGTCGATTCCTTTGGAAACAAAGGAACCCCTGCTGCGTGGCTTCAA
GGACTTCCTGGAACAGGATGGCTGGACGTTTAATGGCAACCGCCCCGAAG
AGAAGGACCGTGAGCTGCTGGTTCAGTTTCACAATGTCATCACCGAGTTC
AAGAAGATGAAGCCCGCCTACCAGGCCATCATCAAGGACATCACTGACAA
GATGGGCAACGGTATGGCCGATTACTGTCGCAAGGCGGCCTTCGATGACG
CCAGCGTGATCACCGTCGAGGAATACGACCTGTACTGCTACTACGTCGCC
GGCTTGGTTGGTGAAGGACTGACGCGCCTCTTCGTCGAGGCCGAGTTTGG
TAACCCTGCCCTGCTGGAACGCGCGCGTCTGCACAAGTCCATGGGACTCT
TCCTCCAAAAGACAAACATCATCCGAGACATCCGAGAGGACGACGATGAT
GGACGTCGCTTCTGGCCCAAAGAGATTTGGTCCAAGCACGTCAAGCAGTT
CGATGATCTGTTCAAGCCCGAGCACCGCGAAGCTGCACTGAACTGCAGCT
CCGAGATGGTGTTGAACGCTTTGGAACATGTTGAAGACTGCCTGTTTTAC
CTGGCTGGCCTGCGTGAGCAGAGTGTGTTTAACTTCTGCGCGATCCCGCA
ATCGATGGCCATTGCCACGCTGGAGCTCTGCTTCCGCAACCCCGCGATCT
TCGAGCGTAACATCAAGATCACCAAGGGTGAGGCGTGCCAGCTGATGTTC
GAGTCGACGCAGAACCTGCGTATCCTCTGTGCTGCCTTCCGCAAGTACGC
GCGCAAGATTCACAAGAAGAACACACCCAAGGACCCTAACTTCCTCAAGG
TCAGCCTTGTTTGTGGACGGATGGGTCTCGCATCGAATGCCATCTACTAC
ACCTTTCATCCCTCGGAACTGAGGTCGATTTTGCAATGATCTTCACTGCC
TGGCTACTGGGTGCGCGATTCGACTTGGCGTGGCAGGAGCTGCGGTCCGG
TAACTTCCGGCCACCAAGAGAAATCCGCCAAAAGCAAGAGCTGTAAATTG
AAAAATGGATCGAGACCATCTTCCCATCTCAGAATGCCGAGGCCGCCAAG
CGTCGTGTCACTGGCGAGCTGACGGAACAGGAGAAGAAGCAGGCCGAGGA
GCACGCCGAGACTCGGAAGGACATGTACTTTATGATGGGTCTCATGGTGG
TGATTGTGTTCATCACCTCGGTCGTTATGGAAGATCTGGCACTCCCCGGT
TCATGAGCGCAATGAGAAGAACGAAACCGAGACTGAGAAGGCCTGCTTCA
AATTCCTCGACCTGACCAGTCGGAGCTTCAGCGCCGTCATCAAGGAGCTC
CACCCGGAGCTGTTGATGCCCGTCTGCGTCTTCTACCTCACACTTCGCGG
GCTGGACACCATCGAAGATGACACGTCGATTCCTTTGGAAACAAAGGAAC
CCCTGCTGCGTGGCTTCAAGGACTTCCTGGAACAGGATGGCTGGACGTTT
AATGGCAACCGCCCCGAAGAGAAGGACCGTGAGCTGCTGGTTCAGTTTCA
CAATGTCATCACCGAGTTCAAGAAGATGAAGCCCGCCTACCAGGCCATCA
TCAAGGACATCACTGACAAGATGGGCAACGGTATGGCCGATTACTGTCGC
AAGGCGGCCTTCGATGACGCCAGCGTGATCACCGTCGAGGAATACGACCT
GTACTGCTACTACGTCGCCGGCTTGGTTGGTGAAGGACTGACGCGCCTCT
TCGTCGAGGCCGAGTTTGGTAACCCTGCCCTGCTGGAACGCGCGCGTCTG
CACAAGTCCATGGGACTCTTCCTCCAAAAGACAAACATCATCCGAGACAT
CCGAGAGGACGACGATGATGGACGTCGCTTCTGGCCCAAAGAGATTTGGT
CCAAGCACGTCAAGCAGTTCGATGATCTGTTCAAGCCCGAGCACCGCGAA
GCTGCACTGAACTGCAGCTCCGAGATGGTGTTGAACGCTTTGGAACATGT
TGAAGACTGCCTGTTTTACCTGGCTGGCCTGCGTGAGCAGAGTGTGTTTA
ACTTCTGCGCGATCCCGCAATCGATGGCCATTGCCACGCTGGAGCTCTGC
TTCCGCAACCCCGCGATCTTCGAGCGTAACATCAAGATCACCAAGGGTGA
GGCGTGCCAGCTGATGTTCGAGTCGACGCAGAACCTGCGTATCCTCTGTG
CTGCCTTCCGCAAGTACGCGCGCAAGATTCACAAGAAGAACACACCCAAG
GACCCTAACTTCCTCAAGGTCAGCCTTGTTTGTGGACGGATGGGTCTCGC
ATCGAATGCCATCTACTACACCTTTCATCCCTCGGAACTGAGGTCGATTT
TGCAATGATCTTCACTGCCTGGCTACTGGGTGCGCGATTCGACTTGGCGT
GGCAGGAGCTGCGGTCCGGTAACTTCCGGCCACCAAGAGAAATCCGCCAA
AAGCAAGAGCTGTAAATTGAAAAATGGATCGAGACCATCTTCCCATCTCA
GAATGCCGAGGCCGCCAAGCGTCGTGTCACTGGCGAGCTGACGGAACAGG
AGAAGAAGCAGGCCGAGGAGCACGCCGAGACTCGGAAGGACATGTACTTT
ATGATGGGTCTCATGGTGGTGATTGTGTTCATCACCTCGGTCGTTATGGA
AGATCTGGCACTCCCCGGTTCATGAGCGCAATGAGAAGAACGAAACCGAG
ACTGAGAAGGCCTGCTTCAAATTCCTCGACCTGACCAGTCGGAGCTTCAG
CGCCGTCATCAAGGAGCTCCACCCGGAGCTGTTGATGCCCGTCTGCGTCT
TCTACCTCACACTTCGCGGGCTGGACACCATCGAAGATGACACGTCGATT
CCTTTGGAAACAAAGGAACCCCTGCTGCGTGGCTTCAAGGACTTCCTGGA
ACAGGATGGCTGGACGTTTAATGGCAACCGCCCCGAAGAGAAGGACCGTG
AGCTGCTGGTTCAGTTTCACAATGTCATCACCGAGTTCAAGAAGATGAAG
CCCGCCTACCAGGCCATCATCAAGGACATCACTGACAAGATGGGCAACGG
TATGGCCGATTACTGTCGCAAGGCGGCCTTCGATGACGCCAGCGTGATCA
CCGTCGAGGAATACGACCTGTACTGCTACTACGTCGCCGGCTTGGTTGGT
GAAGGACTGACGCGCCTCTTCGTCGAGGCCGAGTTTGGTAACCCTGCCCT
GCTGGAACGCGCGCGTCTGCACAAGTCCATGGGACTCTTCCTCCAAAAGA
CAAACATCATCCGAGACATCCGAGAGGACGACGATGATGGACGTCGCTTC
TGGCCCAAAGAGATTTGGTCCAAGCACGTCAAGCAGTTCGATGATCTGTT
CAAGCCCGAGCACCGCGAAGCTGCACTGAACTGCAGCTCCGAGATGGTGT
TGAACGCTTTGGAACATGTTGAAGACTGCCTGTTTTACCTGGCTGGCCTG
CGTGAGCAGAGTGTGTTTAACTTCTGCGCGATCCCGCAATCGATGGCCAT
TGCCACGCTGGAGCTCTGCTTCCGCAACCCCGCGATCTTCGAGCGTAACA
TCAAGATCACCAAGGGTGAGGCGTGCCAGCTGATGTTCGAGTCGACGCAG
AACCTGCGTATCCTCTGTGCTGCCTTCCGCAAGTACGCGCGCAAGATTCA
CAAGAAGAACACACCCAAGGACCCTAACTTCCTCAAGGTCAGCCTTGTTT
GTGGACGGATGGGTCTCGCATCGAATGCCATCTACTACACCTTTCATCCC
TCGGAACTGAGGTCGATTTTGCAATG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0051996	squalene synthase activity
GO:0004310	farnesyl-diphosphate farnesyltransferase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0016740	transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process
GO:0008610	lipid biosynthetic process

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ERG6_1	CBS51388_007550	Aspergillus niger CBS 513.88	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_007550-T1	CBS51388_007550-T1-protein	Aspergillus niger CBS 513.88	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_007550-T1.cds	CBS51388_007550-T1.cds	Aspergillus niger CBS 513.88	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CBS51388_007550-T1.exon4	CBS51388_007550-T1.exon4	Aspergillus niger CBS 513.88	exon
CBS51388_007550-T1.exon3	CBS51388_007550-T1.exon3	Aspergillus niger CBS 513.88	exon
CBS51388_007550-T1.exon2	CBS51388_007550-T1.exon2	Aspergillus niger CBS 513.88	exon
CBS51388_007550-T1.exon1	CBS51388_007550-T1.exon1	Aspergillus niger CBS 513.88	exon

Properties


Property Name	Value
Note	antiSMASH:Cluster_12.1
Note	BUSCO:EOG09262HA6
DBxref	InterPro:IPR033904
DBxref	InterPro:IPR019845
DBxref	InterPro:IPR002060
DBxref	InterPro:IPR006449
DBxref	InterPro:IPR008949
DBxref	PFAM:PF00494
Product	Delta(24)-sterol C-methyltransferase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Aspergillus niger CBS 513.88 whole genome analysis	2021-11-01

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
An12	supercontig	An12:491177..492782 -

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CBS51388_007550-T1, CBS51388_007550-T1 (mRNA) Aspergillus niger CBS 513.88

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CBS51388_007550-T1, CBS51388_007550-T1 (mRNA) Aspergillus niger CBS 513.88