|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at An12:1697631..1698629+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_007956-T1 ID=CBS51388_007956-T1|Name=CBS51388_007956-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=999bp|location=Sequence derived from alignment at An12:1697631..1698629+ (Aspergillus niger CBS 513.88)
ATGTTGAGCCTCATAGTTCCTAGCGTGCAGGTTACTATTGACCGGAGTAA
GGTCACAGTCACGGGAGGTGACGATGAAGATATACGCCGAGCAACCGAGC
AGATCAAAAGAATGCTGGAAGCGGAGCTGGCCGAAGACATTGCCCTGCCA
TCTCCTGTCCCAGGCAAGATAAACCTGAATGTGGATGCAAAGACATATCA
GACCCGCGTAGCTAATGCGATCGCGGATATTTCCGAAGCCAAATATACCA
AGGCAATCCCATCCAGGAAGGTACCTTTGGACTTTCGGGTTGATATGTTA
GCAACACTTCTTCACGGCCGACGGGCCAACAATCCCGCGCGCACGTTCTC
CTTCAATCACAACGGCATCCAGGCGACTGGCTTCAGCCCCGAAGTACTTC
TTAGCATCAACGGTGAGGATGCCTATACAGAAGCACTGGCCGGAACTCAA
CTGTCAAACTCCGCCAAAGCCAGCCTCGATCCGTTCGACAATAAACTCCA
CAATGATACCAAAGAGGTCGCCGAACACGTCATTGCTATCAAAGGCTCTA
TCCGCCGGTTAAGTAAGCTATGCGAACCAGACTCAATTGCGATCAAGGAT
TTCATGAAGGTTATGCCGAGAGGAAGCGTACAGCACCTACATTCTCATGT
GTGCGGACACCTGAAGCCGGGATGCGATGGTTGGGATGCTCTGCCGGGCC
TCATAGCCAATATTACCGTGCCTGGATTACCAGGAGACGGCAACTCGGAT
GCAATGAAGTCCTTCGAGCCAGACCCGAGGGATCTTTATTGTGGTGCAGT
GCTTATGTTGGATGACAGCTCAAAACTGTTTGATGCTACTCTGGTGCTTC
GCACAGTATTCCAGGATGAGACTCGGCAATGGTTGCAGGCTGGGGCTGGT
GTGACCATCAACTCCAACCCGGAACGCGAATATGCTGAAACATGTGAGAA
GCTGGGGAGTGTGGCACCCTTCGTAGTTCCAGCTTCTACTCAGGTTTGA back to topCoding sequence (CDS) from alignment at An12:1697631..1698629+ >CBS51388_007956-T1 ID=CBS51388_007956-T1|Name=CBS51388_007956-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=999bp|location=Sequence derived from alignment at An12:1697631..1698629+ (Aspergillus niger CBS 513.88)
ATGTTGAGCCTCATAGTTCCTAGCGTGCAGGTTACTATTGACCGGAGTAA
GGTCACAGTCACGGGAGGTGACGATGAAGATATACGCCGAGCAACCGAGC
AGATCAAAAGAATGCTGGAAGCGGAGCTGGCCGAAGACATTGCCCTGCCA
TCTCCTGTCCCAGGCAAGATAAACCTGAATGTGGATGCAAAGACATATCA
GACCCGCGTAGCTAATGCGATCGCGGATATTTCCGAAGCCAAATATACCA
AGGCAATCCCATCCAGGAAGGTACCTTTGGACTTTCGGGTTGATATGTTA
GCAACACTTCTTCACGGCCGACGGGCCAACAATCCCGCGCGCACGTTCTC
CTTCAATCACAACGGCATCCAGGCGACTGGCTTCAGCCCCGAAGTACTTC
TTAGCATCAACGGTGAGGATGCCTATACAGAAGCACTGGCCGGAACTCAA
CTGTCAAACTCCGCCAAAGCCAGCCTCGATCCGTTCGACAATAAACTCCA
CAATGATACCAAAGAGGTCGCCGAACACGTCATTGCTATCAAAGGCTCTA
TCCGCCGGTTAAGTAAGCTATGCGAACCAGACTCAATTGCGATCAAGGAT
TTCATGAAGGTTATGCCGAGAGGAAGCGTACAGCACCTACATTCTCATGT
GTGCGGACACCTGAAGCCGGGATGCGATGGTTGGGATGCTCTGCCGGGCC
TCATAGCCAATATTACCGTGCCTGGATTACCAGGAGACGGCAACTCGGAT
GCAATGAAGTCCTTCGAGCCAGACCCGAGGGATCTTTATTGTGGTGCAGT
GCTTATGTTGGATGACAGCTCAAAACTGTTTGATGCTACTCTGGTGCTTC
GCACAGTATTCCAGGATGAGACTCGGCAATGGTTGCAGGCTGGGGCTGGT
GTGACCATCAACTCCAACCCGGAACGCGAATATGCTGAAACATGTGAGAA
GCTGGGGAGTGTGGCACCCTTCGTAGTTCCAGCTTCTACTCAGGTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009058 | biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016833 | oxo-acid-lyase activity |
| GO:0008909 | isochorismate synthase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_12.5 |
| Note | SMCOG1018:isochorismate synthase |
| DBxref | InterPro:IPR005801 |
| DBxref | InterPro:IPR015890 |
| DBxref | InterPro:IPR019996 |
| DBxref | PFAM:PF00425 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An12 | supercontig | An12:1697631..1698629 + |
|
