You are here

Home

CBS51388_008322-T1, CBS51388_008322-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_008322-T1
Unique NameCBS51388_008322-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An13:245067..246251+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_008322-T1 ID=CBS51388_008322-T1|Name=CBS51388_008322-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1185bp|location=Sequence derived from alignment at An13:245067..246251+ (Aspergillus niger CBS 513.88)
ATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATCGAATCCAGCTT
GAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAACTTGGACAGCG
TGCGTCAATTCTTACTATAACCATGGTTCTTCTCTTGATGATGGGGACGA
TGGTTGACAGGTGATGCTAGAGGAGGGATGAGCTAGAATATTGGCTTACA
GAACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGACGGCTCTACATCT
CCTTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACCATCGATTTTGTTC
TCTCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGCTCCGGGCCATGAT
GCACACATGCTGTACACAGTATCGGCAGTGCAAATTCTCGTAACCCTAGA
CGCGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGAAAAGAGAAGGTTG
GCTCTTTCATCGCAGGGCTACAGGACAAAGACACTGGCGCTTTCATGGGC
GATGAATGGGGTGAGAGAGATACACGCTTTCTGTATGGCGCGTTTAATGC
ACTCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTGCCCAAAGCCATTT
CCTATGTCCAACAGTGTGAGAACTTGGACGGCGGCTATGGCATCCAGCCT
GGAGCTGAGTCACATGCTGGTCAAATTTTCACTTGCGTAGGAGCTCTGGC
AATCGCCGGACGACTGGACTTGGTAAACAAGGACCGTCTTGGAGGTTGGC
TCAGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGGAAGGCCCGAGAAA
CTGCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTAGCTTGGCTATGAT
CGACAAACTCCACTGGATTGATAGTGGCAAGCTTTCTGCTTTCATCTTGC
GCTGTCAGGTATGTTATCCCTTCGCCATGGCCTTGCATGCATGGCACTGA
CGCAATCCAGGATTCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCA
TGGTTGATGTGTTTCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTG
AAGTTCAATGGCATCCAAGAAGTAGATCCTGTTTAGTGAGTTATGCAAAC
CTGCGCAACGCAGTGGTGCGGATAGCTAACTTTCTTGTTTAGTTGTATGC
CGAAGGCAATTACACAGAAATATCTGCAACGGTAA
back to top

Coding sequence (CDS) from alignment at An13:245067..246251+

>CBS51388_008322-T1 ID=CBS51388_008322-T1|Name=CBS51388_008322-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4020bp|location=Sequence derived from alignment at An13:245067..246251+ (Aspergillus niger CBS 513.88)
ATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATCGAATCCAGCTT
GAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAACTTGGACAGCA
GGAGGGATGAGCTAGAATATTGGCTTACAGAACACCTTCGCCTGAATGGG
GTGTATTGGGGCTTGACGGCTCTACATCTCCTTGGCCGTCCCGATGTCCT
TCCTCGTGAAGATACCATCGATTTTGTTCTCTCGTGTCAACGGGAGAATG
GCGGCTTCGGGGCAGCTCCGGGCCATGATGCACACATGCTGTACACAGTA
TCGGCAGTGCAAATTCTCGTAACCCTAGACGCGGTGGATGAGCTGGAGAA
GCGCGGTCTAGGAGGAAAAGAGAAGGTTGGCTCTTTCATCGCAGGGCTAC
AGGACAAAGACACTGGCGCTTTCATGGGCGATGAATGGGGTGAGAGAGAT
ACACGCTTTCTGTATGGCGCGTTTAATGCACTCTCCCTTCTTGGGCTTCT
TCACACAGTTGATGTGCCCAAAGCCATTTCCTATGTCCAACAGTGTGAGA
ACTTGGACGGCGGCTATGGCATCCAGCCTGGAGCTGAGTCACATGCTGGT
CAAATTTTCACTTGCGTAGGAGCTCTGGCAATCGCCGGACGACTGGACTT
GGTAAACAAGGACCGTCTTGGAGGTTGGCTCAGCGAAAGACAGGTCGAAA
ATGGTGGTCTGAATGGAAGGCCCGAGAAACTGCCCGATGCATGCTATAGC
TGGTGGGTTGGTGCTAGCTTGGCTATGATCGACAAACTCCACTGGATTGA
TAGTGGCAAGCTTTCTGCTTTCATCTTGCGCTGTCAGGATTCGGAGGCTG
GGGGTATCGGAGACAGACCAGGCAGCATGGTTGATGTGTTTCATACGCAT
TTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAATGGCATCCAAGAAGT
AGATCCTGTTTATTGTATGCCGAAGGCAATTACACAGAAATATCTGCAAC
GGTAAATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATCGAATCC
AGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAACTTGGA
CAGCAGGAGGGATGAGCTAGAATATTGGCTTACAGAACACCTTCGCCTGA
ATGGGGTGTATTGGGGCTTGACGGCTCTACATCTCCTTGGCCGTCCCGAT
GTCCTTCCTCGTGAAGATACCATCGATTTTGTTCTCTCGTGTCAACGGGA
GAATGGCGGCTTCGGGGCAGCTCCGGGCCATGATGCACACATGCTGTACA
CAGTATCGGCAGTGCAAATTCTCGTAACCCTAGACGCGGTGGATGAGCTG
GAGAAGCGCGGTCTAGGAGGAAAAGAGAAGGTTGGCTCTTTCATCGCAGG
GCTACAGGACAAAGACACTGGCGCTTTCATGGGCGATGAATGGGGTGAGA
GAGATACACGCTTTCTGTATGGCGCGTTTAATGCACTCTCCCTTCTTGGG
CTTCTTCACACAGTTGATGTGCCCAAAGCCATTTCCTATGTCCAACAGTG
TGAGAACTTGGACGGCGGCTATGGCATCCAGCCTGGAGCTGAGTCACATG
CTGGTCAAATTTTCACTTGCGTAGGAGCTCTGGCAATCGCCGGACGACTG
GACTTGGTAAACAAGGACCGTCTTGGAGGTTGGCTCAGCGAAAGACAGGT
CGAAAATGGTGGTCTGAATGGAAGGCCCGAGAAACTGCCCGATGCATGCT
ATAGCTGGTGGGTTGGTGCTAGCTTGGCTATGATCGACAAACTCCACTGG
ATTGATAGTGGCAAGCTTTCTGCTTTCATCTTGCGCTGTCAGGATTCGGA
GGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGATGTGTTTCATA
CGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAATGGCATCCAA
GAAGTAGATCCTGTTTATTGTATGCCGAAGGCAATTACACAGAAATATCT
GCAACGGTAAATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATCG
AATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAAC
TTGGACAGCAGGAGGGATGAGCTAGAATATTGGCTTACAGAACACCTTCG
CCTGAATGGGGTGTATTGGGGCTTGACGGCTCTACATCTCCTTGGCCGTC
CCGATGTCCTTCCTCGTGAAGATACCATCGATTTTGTTCTCTCGTGTCAA
CGGGAGAATGGCGGCTTCGGGGCAGCTCCGGGCCATGATGCACACATGCT
GTACACAGTATCGGCAGTGCAAATTCTCGTAACCCTAGACGCGGTGGATG
AGCTGGAGAAGCGCGGTCTAGGAGGAAAAGAGAAGGTTGGCTCTTTCATC
GCAGGGCTACAGGACAAAGACACTGGCGCTTTCATGGGCGATGAATGGGG
TGAGAGAGATACACGCTTTCTGTATGGCGCGTTTAATGCACTCTCCCTTC
TTGGGCTTCTTCACACAGTTGATGTGCCCAAAGCCATTTCCTATGTCCAA
CAGTGTGAGAACTTGGACGGCGGCTATGGCATCCAGCCTGGAGCTGAGTC
ACATGCTGGTCAAATTTTCACTTGCGTAGGAGCTCTGGCAATCGCCGGAC
GACTGGACTTGGTAAACAAGGACCGTCTTGGAGGTTGGCTCAGCGAAAGA
CAGGTCGAAAATGGTGGTCTGAATGGAAGGCCCGAGAAACTGCCCGATGC
ATGCTATAGCTGGTGGGTTGGTGCTAGCTTGGCTATGATCGACAAACTCC
ACTGGATTGATAGTGGCAAGCTTTCTGCTTTCATCTTGCGCTGTCAGGAT
TCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGATGTGTT
TCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAATGGCA
TCCAAGAAGTAGATCCTGTTTATTGTATGCCGAAGGCAATTACACAGAAA
TATCTGCAACGGTAAATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGG
GATCGAATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCA
AGAACTTGGACAGCAGGAGGGATGAGCTAGAATATTGGCTTACAGAACAC
CTTCGCCTGAATGGGGTGTATTGGGGCTTGACGGCTCTACATCTCCTTGG
CCGTCCCGATGTCCTTCCTCGTGAAGATACCATCGATTTTGTTCTCTCGT
GTCAACGGGAGAATGGCGGCTTCGGGGCAGCTCCGGGCCATGATGCACAC
ATGCTGTACACAGTATCGGCAGTGCAAATTCTCGTAACCCTAGACGCGGT
GGATGAGCTGGAGAAGCGCGGTCTAGGAGGAAAAGAGAAGGTTGGCTCTT
TCATCGCAGGGCTACAGGACAAAGACACTGGCGCTTTCATGGGCGATGAA
TGGGGTGAGAGAGATACACGCTTTCTGTATGGCGCGTTTAATGCACTCTC
CCTTCTTGGGCTTCTTCACACAGTTGATGTGCCCAAAGCCATTTCCTATG
TCCAACAGTGTGAGAACTTGGACGGCGGCTATGGCATCCAGCCTGGAGCT
GAGTCACATGCTGGTCAAATTTTCACTTGCGTAGGAGCTCTGGCAATCGC
CGGACGACTGGACTTGGTAAACAAGGACCGTCTTGGAGGTTGGCTCAGCG
AAAGACAGGTCGAAAATGGTGGTCTGAATGGAAGGCCCGAGAAACTGCCC
GATGCATGCTATAGCTGGTGGGTTGGTGCTAGCTTGGCTATGATCGACAA
ACTCCACTGGATTGATAGTGGCAAGCTTTCTGCTTTCATCTTGCGCTGTC
AGGATTCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGAT
GTGTTTCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAA
TGGCATCCAAGAAGTAGATCCTGTTTATTGTATGCCGAAGGCAATTACAC
AGAAATATCTGCAACGGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0018344protein geranylgeranylation
Vocabulary: Molecular Function
TermDefinition
GO:0004663Rab geranylgeranyltransferase activity
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_008322CBS51388_008322Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008322-T1.exon1CBS51388_008322-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_008322-T1.exon2CBS51388_008322-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_008322-T1.exon3CBS51388_008322-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_008322-T1.exon4CBS51388_008322-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008322-T1.cdsCBS51388_008322-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_008322-T1CBS51388_008322-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263G3M
DBxrefInterPro:IPR008930
DBxrefInterPro:IPR026873
DBxrefInterPro:IPR001330
DBxrefPFAM:PF00432
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An13supercontigAn13:245067..246251 +
Powered by Drupal