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Sequences
The following sequences are available for this feature:
mRNA from alignment at An14:282338..284786- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_008645-T1 ID=CBS51388_008645-T1|Name=CBS51388_008645-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2449bp|location=Sequence derived from alignment at An14:282338..284786- (Aspergillus niger CBS 513.88)
ATGTCGCGCTTTTTCTACGGTGGCGGTAGCGACAGCGAGTCCAGCTCCTC
TGAGGAGGAGGAGCTCTACAGTGATCGCGAGGAGGAGGAGCAGTCCGAGG
AGGAGTCCAGCGAGGAAGAGTCTGAGGAGGAGGAGGAGTCCTCTTCCGAG
GACGAGGATGCCGGCAAGACCGGTGCCAACCGTTTCATGAAGAATGTTTC
CGAAAGCGAAGAAAGCGAGGATGAGGAACGAGTAACTATCGTCAAGAGTG
CCAAGGACAAGCGGTTGGAGGAACTCGAAAACACCGTCAAGTTGATTGAA
AATGCCGAGAAGATCAGCGACTGGGCGGTTATCTCGACAGGTGCGTTTGG
CCCTGGAATCAAAGAATGGAATTGCGGGACCGGCAGCGGAGGGAAGGATG
GGTTTTTGATACTAACATCCGTTTTATAGAGTTTGACAAGCTGAACCGTC
AAATCGTCAAGATTGTCCAGTCTGGCCCGACCCCGAAGATCTACGTCAAG
ACCGTTGCGGACCTGGAGGATTTCGTCAACGGGACCATCTCGAAGCAGAA
GTCGAGCAACAAGAAGATGAACGCCAGCAACGCCAAGGGATTCAACGCCG
TTAAGCAGCGTATCAAGAAGAACAACAAGGACTACGCCGTTCAGATCGAC
AAGTACAGGAAGGACAAGGATGGCTTCATGGAAGCCAAGGAGGAAGTGGC
CCGTCCCGTCGCCGCCGCCCCTCGCCTGACCAAGATTGAGCGTATCGAAG
CCCCTGCTCTTTCCACCGCCGGTGATGACGAGGTTTTGCGACCGTTGGCC
GTGGCGGCAAGACCCTCCAGTACACCCCCGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGGCAGCATCTGTNCT
CGTATGTCGAGNAGCACTGGATGATGAGTCTCACCCGTTCCCTGCAGCAC
ATTGACCCCCACACTGCCGAGTACATCGACCGTCTGGGTGATGAGAAGCA
GCTGTACGCCAACCTTGTGCGCACCCAGGTCTACGTCGAGGGTCTTACTC
AGTCCGAGAAGACCGATCCCCGTCAGGACAGCCTTAACCGCGTGGTCATG
AGGAGACTGGAGCACATCTACTTCAAGCCCTCTCAGGTCGTCACGATCCT
GGAGGAAGGTACCTGGAAGGTCCTTCCCTCCGAATTGGAATCCAACGTCA
CTCCCCGTGGCAACACGGGAGATGTGACCAACCTTGTGCAGACCCTTTGC
AGCTACCTGTTCAAGCACAGCGACGGTATCATCCGTGCTCGTGCGATGCT
GTGCCAGATCTACTTCCTTGCTCTGCACGACCAGTACTACCGCTCTCGTG
ACCTGATGCTCATGTCCCACCTTACCGAGAACATCGCCAACTTCGACGTT
TCCACCCAGATCCTCTTCAACCGCACCCTTGTTCAGATCGGTCTGTGTGC
CTTCCGGGCCGGCCTGATCTACGAGGCTCAGACCACCCTCTCTGAGGTCT
GCGGCAGTGGACGTCAGAAAGAGCTGTTGGCTCAGGGCATCATCCTCCAG
CGCTACTCCACCGTCTCGCCGGAACAGGAGCGTCTGGAGCGTCAGCGTCA
GCTGCCCTTCCACATGCACATCAACCTGGAGCTTCTCGAGTGCATCTACC
TGACGTCGAGCATGTTCCTGGAGGTCCCTCTGATGGCTCAGACTTCTTCC
TCCCCCGAGATGAAGCGTCGTGTCATCTCCAAGACCTTCCGTCGTATGCT
GGACTACAACGAGCGCCAGGTCTTCACTGGTCCTGCTGAGAACACCCGTG
ACGGTGTCATCATGAGTGCCAAGTTCCTCGCCGCCGGAGACTGGAAGAAG
GCCGCTGAGATGCTCAACTCGATCAAGATCTGGGATCTGATGCCCCAGCC
CGACAAGGTCAAGGAGATGCTGTCCCAGCAGATCCAGGAGGAGGGTCTCC
GCACCTACCTCTTCACCTACGCCCCCTTCTACGACAGCCTCTCCATCTCC
ACCCTGGCTACCATGTTCGAGCTCCCCGAGAAGAAGATCGCCGCTATCAT
CAGCCGTATGATCTCTCACGAGGAATTGGCCGCTGCTCTCGACCAGGTCA
ACGATGCCATTGTCTTCCGCAAGGGTGTCGAGTTGTCGCGTCTCCAGTCC
CAGATCGTCACCCTCGCCGACAAGTCGATGAACCTTCTGGAGTCCAACGA
AAAGACTCTCGAGCAGCGTACGCAAGGCATGGCCAACGCCTTCCAGCGCG
ATCAGGGCGCCGGCGCCCGTGGTGGCCGTGGTCCTCGAGGTGGTGGCCAA
GCCCGTGGTGGTCCCAGATTCCCTGGTGGCCAACAAGGTCGTCGGCCTGG
TGGACAGCAGTTTAGCGGTGGTGCATTGGGCGGGGCGATCAAGGCATAA back to topCoding sequence (CDS) from alignment at An14:282338..284786- >CBS51388_008645-T1 ID=CBS51388_008645-T1|Name=CBS51388_008645-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=6435bp|location=Sequence derived from alignment at An14:282338..284786- (Aspergillus niger CBS 513.88)
CACATTGACCCCCACACTGCCGAGTACATCGACCGTCTGGGTGATGAGAA
GCAGCTGTACGCCAACCTTGTGCGCACCCAGGTCTACGTCGAGGGTCTTA
CTCAGTCCGAGAAGACCGATCCCCGTCAGGACAGCCTTAACCGCGTGGTC
ATGAGGAGACTGGAGCACATCTACTTCAAGCCCTCTCAGGTCGTCACGAT
CCTGGAGGAAGGTACCTGGAAGGTCCTTCCCTCCGAATTGGAATCCAACG
TCACTCCCCGTGGCAACACGGGAGATGTGACCAACCTTGTGCAGACCCTT
TGCAGCTACCTGTTCAAGCACAGCGACGGTATCATCCGTGCTCGTGCGAT
GCTGTGCCAGATCTACTTCCTTGCTCTGCACGACCAGTACTACCGCTCTC
GTGACCTGATGCTCATGTCCCACCTTACCGAGAACATCGCCAACTTCGAC
GTTTCCACCCAGATCCTCTTCAACCGCACCCTTGTTCAGATCGGTCTGTG
TGCCTTCCGGGCCGGCCTGATCTACGAGGCTCAGACCACCCTCTCTGAGG
TCTGCGGCAGTGGACGTCAGAAAGAGCTGTTGGCTCAGGGCATCATCCTC
CAGCGCTACTCCACCGTCTCGCCGGAACAGGAGCGTCTGGAGCGTCAGCG
TCAGCTGCCCTTCCACATGCACATCAACCTGGAGCTTCTCGAGTGCATCT
ACCTGACGTCGAGCATGTTCCTGGAGGTCCCTCTGATGGCTCAGACTTCT
TCCTCCCCCGAGATGAAGCGTCGTGTCATCTCCAAGACCTTCCGTCGTAT
GCTGGACTACAACGAGCGCCAGGTCTTCACTGGTCCTGCTGAGAACACCC
GTGACGGTGTCATCATGAGTGCCAAGTTCCTCGCCGCCGGAGACTGGAAG
AAGGCCGCTGAGATGCTCAACTCGATCAAGATCTGGGATCTGATGCCCCA
GCCCGACAAGGTCAAGGAGATGCTGTCCCAGCAGATCCAGGAGGAGGGTC
TCCGCACCTACCTCTTCACCTACGCCCCCTTCTACGACAGCCTCTCCATC
TCCACCCTGGCTACCATGTTCGAGCTCCCCGAGAAGAAGATCGCCGCTAT
CATCAGCCGTATGATCTCTCACGAGGAATTGGCCGCTGCTCTCGACCAGG
TCAACGATGCCATTGTCTTCCGCAAGGGTGTCGAGTTGTCGCGTCTCCAG
TCCCAGATCGTCACCCTCGCCGACAAGTCGATGAACCTTCTGGAGTCCAA
CGAAAAGACTCTCGAGCAGCGTACGCAAGGCATGGCCAACGCCTTCCAGC
GCGATCAGGGCGCCGGCGCCCGTGGTGGCCGTGGTCCTCGAGGTGGTGGC
CAAGCCCGTGGTGGTCCCAGATTCCCTGGTGGCCAACAAGGTCGTCGGCC
TGGTGGACAGCAGTTTAGCGGTGGTGCATTGGGCGGGGCGATCAAGGCAT
AAAGTTTGACAAGCTGAACCGTCAAATCGTCAAGATTGTCCAGTCTGGCC
CGACCCCGAAGATCTACGTCAAGACCGTTGCGGACCTGGAGGATTTCGTC
AACGGGACCATCTCGAAGCAGAAGTCGAGCAACAAGAAGATGAACGCCAG
CAACGCCAAGGGATTCAACGCCGTTAAGCAGCGTATCAAGAAGAACAACA
AGGACTACGCCGTTCAGATCGACAAGTACAGGAAGGACAAGGATGGCTTC
ATGGAAGCCAAGGAGGAAGTGGCCCGTCCCGTCGCCGCCGCCCCTCGCCT
GACCAAGATTGAGCGTATCGAAGCCCCTGCTCTTTCCACCGCCGGTGATG
ACGAGATGTCGCGCTTTTTCTACGGTGGCGGTAGCGACAGCGAGTCCAGC
TCCTCTGAGGAGGAGGAGCTCTACAGTGATCGCGAGGAGGAGGAGCAGTC
CGAGGAGGAGTCCAGCGAGGAAGAGTCTGAGGAGGAGGAGGAGTCCTCTT
CCGAGGACGAGGATGCCGGCAAGACCGGTGCCAACCGTTTCATGAAGAAT
GTTTCCGAAAGCGAAGAAAGCGAGGATGAGGAACGAGTAACTATCGTCAA
GAGTGCCAAGGACAAGCGGTTGGAGGAACTCGAAAACACCGTCAAGTTGA
TTGAAAATGCCGAGAAGATCAGCGACTGGGCGGTTATCTCGACAGCACAT
TGACCCCCACACTGCCGAGTACATCGACCGTCTGGGTGATGAGAAGCAGC
TGTACGCCAACCTTGTGCGCACCCAGGTCTACGTCGAGGGTCTTACTCAG
TCCGAGAAGACCGATCCCCGTCAGGACAGCCTTAACCGCGTGGTCATGAG
GAGACTGGAGCACATCTACTTCAAGCCCTCTCAGGTCGTCACGATCCTGG
AGGAAGGTACCTGGAAGGTCCTTCCCTCCGAATTGGAATCCAACGTCACT
CCCCGTGGCAACACGGGAGATGTGACCAACCTTGTGCAGACCCTTTGCAG
CTACCTGTTCAAGCACAGCGACGGTATCATCCGTGCTCGTGCGATGCTGT
GCCAGATCTACTTCCTTGCTCTGCACGACCAGTACTACCGCTCTCGTGAC
CTGATGCTCATGTCCCACCTTACCGAGAACATCGCCAACTTCGACGTTTC
CACCCAGATCCTCTTCAACCGCACCCTTGTTCAGATCGGTCTGTGTGCCT
TCCGGGCCGGCCTGATCTACGAGGCTCAGACCACCCTCTCTGAGGTCTGC
GGCAGTGGACGTCAGAAAGAGCTGTTGGCTCAGGGCATCATCCTCCAGCG
CTACTCCACCGTCTCGCCGGAACAGGAGCGTCTGGAGCGTCAGCGTCAGC
TGCCCTTCCACATGCACATCAACCTGGAGCTTCTCGAGTGCATCTACCTG
ACGTCGAGCATGTTCCTGGAGGTCCCTCTGATGGCTCAGACTTCTTCCTC
CCCCGAGATGAAGCGTCGTGTCATCTCCAAGACCTTCCGTCGTATGCTGG
ACTACAACGAGCGCCAGGTCTTCACTGGTCCTGCTGAGAACACCCGTGAC
GGTGTCATCATGAGTGCCAAGTTCCTCGCCGCCGGAGACTGGAAGAAGGC
CGCTGAGATGCTCAACTCGATCAAGATCTGGGATCTGATGCCCCAGCCCG
ACAAGGTCAAGGAGATGCTGTCCCAGCAGATCCAGGAGGAGGGTCTCCGC
ACCTACCTCTTCACCTACGCCCCCTTCTACGACAGCCTCTCCATCTCCAC
CCTGGCTACCATGTTCGAGCTCCCCGAGAAGAAGATCGCCGCTATCATCA
GCCGTATGATCTCTCACGAGGAATTGGCCGCTGCTCTCGACCAGGTCAAC
GATGCCATTGTCTTCCGCAAGGGTGTCGAGTTGTCGCGTCTCCAGTCCCA
GATCGTCACCCTCGCCGACAAGTCGATGAACCTTCTGGAGTCCAACGAAA
AGACTCTCGAGCAGCGTACGCAAGGCATGGCCAACGCCTTCCAGCGCGAT
CAGGGCGCCGGCGCCCGTGGTGGCCGTGGTCCTCGAGGTGGTGGCCAAGC
CCGTGGTGGTCCCAGATTCCCTGGTGGCCAACAAGGTCGTCGGCCTGGTG
GACAGCAGTTTAGCGGTGGTGCATTGGGCGGGGCGATCAAGGCATAAAGT
TTGACAAGCTGAACCGTCAAATCGTCAAGATTGTCCAGTCTGGCCCGACC
CCGAAGATCTACGTCAAGACCGTTGCGGACCTGGAGGATTTCGTCAACGG
GACCATCTCGAAGCAGAAGTCGAGCAACAAGAAGATGAACGCCAGCAACG
CCAAGGGATTCAACGCCGTTAAGCAGCGTATCAAGAAGAACAACAAGGAC
TACGCCGTTCAGATCGACAAGTACAGGAAGGACAAGGATGGCTTCATGGA
AGCCAAGGAGGAAGTGGCCCGTCCCGTCGCCGCCGCCCCTCGCCTGACCA
AGATTGAGCGTATCGAAGCCCCTGCTCTTTCCACCGCCGGTGATGACGAG
ATGTCGCGCTTTTTCTACGGTGGCGGTAGCGACAGCGAGTCCAGCTCCTC
TGAGGAGGAGGAGCTCTACAGTGATCGCGAGGAGGAGGAGCAGTCCGAGG
AGGAGTCCAGCGAGGAAGAGTCTGAGGAGGAGGAGGAGTCCTCTTCCGAG
GACGAGGATGCCGGCAAGACCGGTGCCAACCGTTTCATGAAGAATGTTTC
CGAAAGCGAAGAAAGCGAGGATGAGGAACGAGTAACTATCGTCAAGAGTG
CCAAGGACAAGCGGTTGGAGGAACTCGAAAACACCGTCAAGTTGATTGAA
AATGCCGAGAAGATCAGCGACTGGGCGGTTATCTCGACAGCACATTGACC
CCCACACTGCCGAGTACATCGACCGTCTGGGTGATGAGAAGCAGCTGTAC
GCCAACCTTGTGCGCACCCAGGTCTACGTCGAGGGTCTTACTCAGTCCGA
GAAGACCGATCCCCGTCAGGACAGCCTTAACCGCGTGGTCATGAGGAGAC
TGGAGCACATCTACTTCAAGCCCTCTCAGGTCGTCACGATCCTGGAGGAA
GGTACCTGGAAGGTCCTTCCCTCCGAATTGGAATCCAACGTCACTCCCCG
TGGCAACACGGGAGATGTGACCAACCTTGTGCAGACCCTTTGCAGCTACC
TGTTCAAGCACAGCGACGGTATCATCCGTGCTCGTGCGATGCTGTGCCAG
ATCTACTTCCTTGCTCTGCACGACCAGTACTACCGCTCTCGTGACCTGAT
GCTCATGTCCCACCTTACCGAGAACATCGCCAACTTCGACGTTTCCACCC
AGATCCTCTTCAACCGCACCCTTGTTCAGATCGGTCTGTGTGCCTTCCGG
GCCGGCCTGATCTACGAGGCTCAGACCACCCTCTCTGAGGTCTGCGGCAG
TGGACGTCAGAAAGAGCTGTTGGCTCAGGGCATCATCCTCCAGCGCTACT
CCACCGTCTCGCCGGAACAGGAGCGTCTGGAGCGTCAGCGTCAGCTGCCC
TTCCACATGCACATCAACCTGGAGCTTCTCGAGTGCATCTACCTGACGTC
GAGCATGTTCCTGGAGGTCCCTCTGATGGCTCAGACTTCTTCCTCCCCCG
AGATGAAGCGTCGTGTCATCTCCAAGACCTTCCGTCGTATGCTGGACTAC
AACGAGCGCCAGGTCTTCACTGGTCCTGCTGAGAACACCCGTGACGGTGT
CATCATGAGTGCCAAGTTCCTCGCCGCCGGAGACTGGAAGAAGGCCGCTG
AGATGCTCAACTCGATCAAGATCTGGGATCTGATGCCCCAGCCCGACAAG
GTCAAGGAGATGCTGTCCCAGCAGATCCAGGAGGAGGGTCTCCGCACCTA
CCTCTTCACCTACGCCCCCTTCTACGACAGCCTCTCCATCTCCACCCTGG
CTACCATGTTCGAGCTCCCCGAGAAGAAGATCGCCGCTATCATCAGCCGT
ATGATCTCTCACGAGGAATTGGCCGCTGCTCTCGACCAGGTCAACGATGC
CATTGTCTTCCGCAAGGGTGTCGAGTTGTCGCGTCTCCAGTCCCAGATCG
TCACCCTCGCCGACAAGTCGATGAACCTTCTGGAGTCCAACGAAAAGACT
CTCGAGCAGCGTACGCAAGGCATGGCCAACGCCTTCCAGCGCGATCAGGG
CGCCGGCGCCCGTGGTGGCCGTGGTCCTCGAGGTGGTGGCCAAGCCCGTG
GTGGTCCCAGATTCCCTGGTGGCCAACAAGGTCGTCGGCCTGGTGGACAG
CAGTTTAGCGGTGGTGCATTGGGCGGGGCGATCAAGGCATAAAGTTTGAC
AAGCTGAACCGTCAAATCGTCAAGATTGTCCAGTCTGGCCCGACCCCGAA
GATCTACGTCAAGACCGTTGCGGACCTGGAGGATTTCGTCAACGGGACCA
TCTCGAAGCAGAAGTCGAGCAACAAGAAGATGAACGCCAGCAACGCCAAG
GGATTCAACGCCGTTAAGCAGCGTATCAAGAAGAACAACAAGGACTACGC
CGTTCAGATCGACAAGTACAGGAAGGACAAGGATGGCTTCATGGAAGCCA
AGGAGGAAGTGGCCCGTCCCGTCGCCGCCGCCCCTCGCCTGACCAAGATT
GAGCGTATCGAAGCCCCTGCTCTTTCCACCGCCGGTGATGACGAGATGTC
GCGCTTTTTCTACGGTGGCGGTAGCGACAGCGAGTCCAGCTCCTCTGAGG
AGGAGGAGCTCTACAGTGATCGCGAGGAGGAGGAGCAGTCCGAGGAGGAG
TCCAGCGAGGAAGAGTCTGAGGAGGAGGAGGAGTCCTCTTCCGAGGACGA
GGATGCCGGCAAGACCGGTGCCAACCGTTTCATGAAGAATGTTTCCGAAA
GCGAAGAAAGCGAGGATGAGGAACGAGTAACTATCGTCAAGAGTGCCAAG
GACAAGCGGTTGGAGGAACTCGAAAACACCGTCAAGTTGATTGAAAATGC
CGAGAAGATCAGCGACTGGGCGGTTATCTCGACAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005852 | eukaryotic translation initiation factor 3 complex |
Vocabulary: Biological Process
| Term | Definition |
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| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0031369 | translation initiation factor binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036390 |
| DBxref | InterPro:IPR027516 |
| DBxref | InterPro:IPR036388 |
| DBxref | InterPro:IPR008905 |
| DBxref | InterPro:IPR000717 |
| DBxref | PFAM:PF01399 |
| Product | Translation initiation factor 3 subunit c |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An14 | supercontig | An14:282338..284786 - |
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